Wall clock time and date at job start Tue Mar 31 2020 15:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39753 * 125.84194 * 2 1 4 4 C 1.36104 * 107.82778 * 180.14556 * 3 2 1 5 5 N 1.39478 * 126.21531 * 179.90568 * 4 3 2 6 6 C 1.34780 * 120.00077 * 359.69212 * 5 4 3 7 7 O 1.21291 * 119.99696 * 359.97438 * 6 5 4 8 8 C 1.50692 * 119.99903 * 179.97438 * 6 5 4 9 9 C 1.47203 * 109.46900 * 179.97438 * 8 6 5 10 10 C 7.24078 * 119.71253 * 359.75079 * 2 1 3 11 11 C 8.29949 * 112.58099 * 359.74802 * 2 1 3 12 12 C 1.39535 * 120.13986 * 131.51491 * 11 10 9 13 13 C 1.37972 * 119.85845 * 179.97438 * 12 11 10 14 14 C 1.38346 * 120.13996 * 359.97438 * 13 12 11 15 15 C 1.38346 * 120.28578 * 0.02562 * 14 13 12 16 16 C 1.37972 * 120.14050 * 359.97438 * 15 14 13 17 17 N 1.35254 * 107.56976 * 359.64375 * 4 3 2 18 18 C 1.46500 * 126.04937 * 180.23106 * 17 4 3 19 19 C 1.50701 * 109.47544 * 89.99834 * 18 17 4 20 20 H 1.07997 * 119.99834 * 359.97438 * 19 18 17 21 21 C 1.37872 * 119.99956 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00226 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00404 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47030 * 89.99973 * 23 21 19 25 25 H 1.48501 * 109.47481 * 210.00160 * 23 21 19 26 26 H 1.48501 * 109.47063 * 330.00328 * 23 21 19 27 27 N 1.30850 * 125.83606 * 179.74781 * 2 1 3 28 28 H 1.09001 * 109.47010 * 270.23414 * 1 2 3 29 29 H 1.09002 * 109.46963 * 30.22958 * 1 2 3 30 30 H 1.08994 * 109.47755 * 150.23351 * 1 2 3 31 31 H 1.08002 * 126.08151 * 0.03646 * 3 2 1 32 32 H 0.97006 * 120.00007 * 179.68945 * 5 4 3 33 33 H 1.08999 * 109.47631 * 60.00080 * 8 6 5 34 34 H 1.08996 * 109.47410 * 299.99626 * 8 6 5 35 35 H 1.08007 * 120.07409 * 359.69681 * 12 11 10 36 36 H 1.08000 * 119.92892 * 180.02562 * 13 12 11 37 37 H 1.08003 * 119.85471 * 179.97438 * 14 13 12 38 38 H 1.08002 * 119.92423 * 179.97438 * 15 14 13 39 39 H 1.08003 * 120.06529 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.47096 * 209.99951 * 18 17 4 41 41 H 1.08999 * 109.47035 * 329.99509 * 18 17 4 42 42 H 0.96999 * 120.00586 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6197 0.7120 -0.0033 5 7 4.7513 1.5273 -0.0063 6 6 4.6158 2.8682 -0.0123 7 8 3.5097 3.3660 -0.0156 8 6 5.8385 3.7491 -0.0149 9 6 5.4254 5.1619 -0.0222 10 6 5.0959 6.2887 -0.0274 11 6 4.6939 7.6632 -0.0337 12 6 3.7307 8.1072 -0.9404 13 6 3.3474 9.4326 -0.9410 14 6 3.9154 10.3205 -0.0450 15 6 4.8709 9.8866 0.8565 16 6 5.2629 8.5638 0.8674 17 7 3.6092 -0.6405 0.0027 18 6 4.7869 -1.5117 0.0067 19 6 5.1908 -1.8042 1.4288 20 1 4.6269 -1.3828 2.2478 21 6 6.2809 -2.6088 1.6843 22 7 6.6337 -2.8636 2.9253 23 14 7.2568 -3.3371 0.2677 24 1 8.3477 -2.4042 -0.1131 25 1 7.8405 -4.6371 0.6853 26 1 6.3581 -3.5488 -0.8954 27 7 2.2731 -1.0608 0.0047 28 1 -0.3633 0.0042 1.0277 29 1 -0.3633 0.8879 -0.5174 30 1 -0.3634 -0.8920 -0.5101 31 1 1.9902 2.1596 0.0006 32 1 5.6359 1.1292 -0.0039 33 1 6.4346 3.5407 -0.9034 34 1 6.4327 3.5485 0.8765 35 1 3.2894 7.4159 -1.6431 36 1 2.6016 9.7775 -1.6420 37 1 3.6122 11.3571 -0.0498 38 1 5.3109 10.5848 1.5531 39 1 6.0093 8.2264 1.5714 40 1 4.5498 -2.4456 -0.5030 41 1 5.6083 -1.0147 -0.5094 42 1 7.4008 -3.4294 3.1051 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319311890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:11 Heat of formation + Delta-G solvation = 117.200757 kcal Electronic energy + Delta-G solvation = -24744.134262 eV Core-core repulsion = 21078.297794 eV Total energy + Delta-G solvation = -3665.836468 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.96784 -39.40647 -39.27045 -34.90116 -34.48083 -33.78130 -32.21914 -31.85883 -31.23317 -29.63904 -29.03273 -27.67141 -26.33435 -23.38015 -22.77424 -22.60448 -21.68372 -19.86592 -19.45789 -18.35830 -17.23958 -17.02351 -16.66766 -16.29706 -15.77092 -15.28484 -15.21351 -14.74009 -14.54982 -14.12562 -13.96671 -13.75776 -13.72456 -13.42076 -13.14594 -13.03762 -12.73935 -12.60571 -12.32932 -11.91535 -11.86020 -11.72258 -11.54064 -11.17197 -11.07204 -10.86217 -10.52497 -10.29401 -10.25970 -9.96002 -9.78725 -9.58347 -9.25497 -8.89017 -8.67705 -7.98874 -7.52487 -6.35884 -4.40614 0.67654 1.10785 2.14432 2.30532 2.62787 2.92927 3.03046 3.05064 3.15171 3.16658 3.52712 3.61516 3.80018 3.88447 4.11728 4.62251 4.66749 4.68964 4.81063 4.90151 5.04367 5.11621 5.15238 5.24450 5.27744 5.30424 5.57127 5.73354 5.75587 6.00574 6.00815 6.09704 6.12528 6.19159 6.19444 6.24232 6.27813 6.34145 6.60858 6.65270 6.72340 7.17429 7.37040 7.42312 7.51571 7.72681 8.12663 8.26083 8.54088 8.70507 9.18532 10.76276 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.002509 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.281467 B =11158.546650 C =12632.468109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.055 3.945 3 C -0.292 4.292 4 C 0.304 3.696 5 N -0.640 5.640 6 C 0.521 3.479 7 O -0.504 6.504 8 C -0.019 4.019 9 C -0.133 4.133 10 C -0.130 4.130 11 C 0.022 3.978 12 C -0.094 4.094 13 C -0.120 4.120 14 C -0.115 4.115 15 C -0.121 4.121 16 C -0.098 4.098 17 N -0.344 5.344 18 C 0.230 3.770 19 C -0.546 4.546 20 H 0.081 0.919 21 C 0.080 3.920 22 N -0.883 5.883 23 Si 0.872 3.128 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.263 1.263 27 N -0.282 5.282 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.163 0.837 32 H 0.417 0.583 33 H 0.124 0.876 34 H 0.127 0.873 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.124 0.876 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.055 0.945 41 H 0.035 0.965 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.216 21.636 -8.074 23.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 C -0.324 4.324 4 C 0.083 3.917 5 N -0.287 5.287 6 C 0.307 3.693 7 O -0.377 6.377 8 C -0.059 4.059 9 C -0.134 4.134 10 C -0.130 4.130 11 C 0.022 3.978 12 C -0.112 4.112 13 C -0.138 4.138 14 C -0.133 4.133 15 C -0.139 4.139 16 C -0.116 4.116 17 N -0.129 5.129 18 C 0.110 3.890 19 C -0.584 4.584 20 H 0.099 0.901 21 C -0.125 4.125 22 N -0.519 5.519 23 Si 0.698 3.302 24 H -0.196 1.196 25 H -0.204 1.204 26 H -0.188 1.188 27 N -0.107 5.107 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.180 0.820 32 H 0.253 0.747 33 H 0.142 0.858 34 H 0.145 0.855 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.142 0.858 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.073 0.927 41 H 0.053 0.947 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.674 20.562 -7.949 22.108 hybrid contribution 1.340 -0.023 -0.414 1.403 sum -0.334 20.539 -8.363 22.179 Atomic orbital electron populations 1.20036 0.87401 1.02381 1.02345 1.22059 0.96606 0.90960 1.01406 1.21285 0.89031 1.00532 1.21508 1.17882 0.88068 0.83068 1.02723 1.42710 1.08303 1.05462 1.72239 1.20271 0.91169 0.81204 0.76635 1.90679 1.26687 1.73579 1.46714 1.18539 0.96079 0.84616 1.06621 1.21022 0.99895 0.92525 0.99920 1.18961 0.99760 0.92100 1.02194 1.15892 0.97406 0.87112 0.97360 1.21295 0.95995 0.96033 0.97871 1.21106 1.00216 0.93096 0.99359 1.21276 0.96690 0.99806 0.95553 1.21085 0.98004 0.95509 0.99276 1.21254 0.99500 0.92975 0.97885 1.48899 1.06225 1.01968 1.55765 1.19941 0.79255 0.90074 0.99694 1.21189 1.14221 1.32687 0.90301 0.90062 1.24827 0.96648 0.95213 0.95794 1.69870 1.26766 1.36700 1.18565 0.86920 0.80746 0.79783 0.82799 1.19633 1.20359 1.18764 1.77368 0.85766 1.21716 1.25833 0.91130 0.91072 0.91479 0.82010 0.74671 0.85793 0.85508 0.85395 0.85515 0.85820 0.85563 0.85546 0.92725 0.94692 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.01 0.38 -0.55 16 2 C 0.05 1.09 7.21 -82.44 -0.59 0.50 16 3 C -0.29 -5.93 9.58 -39.78 -0.38 -6.31 16 4 C 0.30 6.24 7.66 -153.16 -1.17 5.07 16 5 N -0.64 -10.46 5.42 -11.47 -0.06 -10.52 16 6 C 0.52 7.85 7.78 -10.99 -0.09 7.77 16 7 O -0.50 -9.30 13.16 5.55 0.07 -9.23 16 8 C -0.02 -0.20 6.19 -30.67 -0.19 -0.39 16 9 C -0.13 -1.72 12.58 -37.12 -0.47 -2.18 16 10 C -0.13 -1.72 13.24 -38.84 -0.51 -2.24 16 11 C 0.02 0.26 5.72 -107.01 -0.61 -0.35 16 12 C -0.09 -0.97 9.75 -39.20 -0.38 -1.36 16 13 C -0.12 -0.99 10.03 -39.64 -0.40 -1.39 16 14 C -0.12 -0.87 10.04 -39.50 -0.40 -1.26 16 15 C -0.12 -0.96 10.03 -39.64 -0.40 -1.35 16 16 C -0.10 -0.95 9.75 -39.20 -0.38 -1.34 16 17 N -0.34 -7.79 3.60 -61.57 -0.22 -8.02 16 18 C 0.23 5.28 5.07 -5.19 -0.03 5.25 16 19 C -0.55 -14.69 9.94 -34.44 -0.34 -15.03 16 20 H 0.08 2.52 8.06 -52.49 -0.42 2.09 16 21 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 22 N -0.88 -25.38 13.96 55.43 0.77 -24.60 16 23 Si 0.87 19.18 27.47 -169.99 -4.67 14.51 16 24 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.26 -5.58 6.54 56.52 0.37 -5.21 16 27 N -0.28 -6.45 12.56 33.65 0.42 -6.03 16 28 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.16 3.24 5.83 -52.49 -0.31 2.93 16 32 H 0.42 5.87 7.97 -40.82 -0.33 5.54 16 33 H 0.12 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.13 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 36 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 37 H 0.12 0.62 8.06 -52.48 -0.42 0.20 16 38 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 39 H 0.13 1.07 8.06 -52.48 -0.42 0.64 16 40 H 0.05 1.28 7.20 -51.93 -0.37 0.91 16 41 H 0.04 0.71 6.93 -51.93 -0.36 0.35 16 42 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 372.70 15.07 5.62 5.62 Total: -1.00 -34.76 372.70 -9.31 -44.07 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -5.18 Total: 7.33 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: -6.06 Total: -13.13 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: 0.91 Total: -49.17 kcal Atomic # 8 Polarization: -9.30 SS G_CDS: 0.07 Total: -9.23 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -4.67 Total: 14.51 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.76 -9.31 -44.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319311890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.272 kcal (2) G-P(sol) polarization free energy of solvation -34.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds