Wall clock time and date at job start Tue Mar 31 2020 15:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.39753 * 125.84194 * 2 1 4 4 C 1.36104 * 107.82778 * 180.14556 * 3 2 1 5 5 N 1.39478 * 126.21531 * 179.90568 * 4 3 2 6 6 C 1.34780 * 120.00077 * 359.69212 * 5 4 3 7 7 O 1.21291 * 119.99696 * 359.97438 * 6 5 4 8 8 C 1.50692 * 119.99903 * 179.97438 * 6 5 4 9 9 C 1.47203 * 109.46900 * 179.97438 * 8 6 5 10 10 C 7.24078 * 119.71253 * 359.75079 * 2 1 3 11 11 C 8.29949 * 112.58099 * 359.74802 * 2 1 3 12 12 C 1.39535 * 120.13986 * 131.51491 * 11 10 9 13 13 C 1.37972 * 119.85845 * 179.97438 * 12 11 10 14 14 C 1.38346 * 120.13996 * 359.97438 * 13 12 11 15 15 C 1.38346 * 120.28578 * 0.02562 * 14 13 12 16 16 C 1.37972 * 120.14050 * 359.97438 * 15 14 13 17 17 N 1.35254 * 107.56976 * 359.64375 * 4 3 2 18 18 C 1.46500 * 126.04937 * 180.23106 * 17 4 3 19 19 C 1.50701 * 109.47544 * 89.99834 * 18 17 4 20 20 H 1.07997 * 119.99834 * 359.97438 * 19 18 17 21 21 C 1.37872 * 119.99956 * 180.02562 * 19 18 17 22 22 N 1.31514 * 120.00226 * 179.97438 * 21 19 18 23 23 Si 1.86800 * 120.00404 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47030 * 89.99973 * 23 21 19 25 25 H 1.48501 * 109.47481 * 210.00160 * 23 21 19 26 26 H 1.48501 * 109.47063 * 330.00328 * 23 21 19 27 27 N 1.30850 * 125.83606 * 179.74781 * 2 1 3 28 28 H 1.09001 * 109.47010 * 270.23414 * 1 2 3 29 29 H 1.09002 * 109.46963 * 30.22958 * 1 2 3 30 30 H 1.08994 * 109.47755 * 150.23351 * 1 2 3 31 31 H 1.08002 * 126.08151 * 0.03646 * 3 2 1 32 32 H 0.97006 * 120.00007 * 179.68945 * 5 4 3 33 33 H 1.08999 * 109.47631 * 60.00080 * 8 6 5 34 34 H 1.08996 * 109.47410 * 299.99626 * 8 6 5 35 35 H 1.08007 * 120.07409 * 359.69681 * 12 11 10 36 36 H 1.08000 * 119.92892 * 180.02562 * 13 12 11 37 37 H 1.08003 * 119.85471 * 179.97438 * 14 13 12 38 38 H 1.08002 * 119.92423 * 179.97438 * 15 14 13 39 39 H 1.08003 * 120.06529 * 179.97438 * 16 15 14 40 40 H 1.09001 * 109.47096 * 209.99951 * 18 17 4 41 41 H 1.08999 * 109.47035 * 329.99509 * 18 17 4 42 42 H 0.96999 * 120.00586 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6197 0.7120 -0.0033 5 7 4.7513 1.5273 -0.0063 6 6 4.6158 2.8682 -0.0123 7 8 3.5097 3.3660 -0.0156 8 6 5.8385 3.7491 -0.0149 9 6 5.4254 5.1619 -0.0222 10 6 5.0959 6.2887 -0.0274 11 6 4.6939 7.6632 -0.0337 12 6 3.7307 8.1072 -0.9404 13 6 3.3474 9.4326 -0.9410 14 6 3.9154 10.3205 -0.0450 15 6 4.8709 9.8866 0.8565 16 6 5.2629 8.5638 0.8674 17 7 3.6092 -0.6405 0.0027 18 6 4.7869 -1.5117 0.0067 19 6 5.1908 -1.8042 1.4288 20 1 4.6269 -1.3828 2.2478 21 6 6.2809 -2.6088 1.6843 22 7 6.6337 -2.8636 2.9253 23 14 7.2568 -3.3371 0.2677 24 1 8.3477 -2.4042 -0.1131 25 1 7.8405 -4.6371 0.6853 26 1 6.3581 -3.5488 -0.8954 27 7 2.2731 -1.0608 0.0047 28 1 -0.3633 0.0042 1.0277 29 1 -0.3633 0.8879 -0.5174 30 1 -0.3634 -0.8920 -0.5101 31 1 1.9902 2.1596 0.0006 32 1 5.6359 1.1292 -0.0039 33 1 6.4346 3.5407 -0.9034 34 1 6.4327 3.5485 0.8765 35 1 3.2894 7.4159 -1.6431 36 1 2.6016 9.7775 -1.6420 37 1 3.6122 11.3571 -0.0498 38 1 5.3109 10.5848 1.5531 39 1 6.0093 8.2264 1.5714 40 1 4.5498 -2.4456 -0.5030 41 1 5.6083 -1.0147 -0.5094 42 1 7.4008 -3.4294 3.1051 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319311890.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:10 Heat of formation + Delta-G solvation = 96.580057 kcal Electronic energy + Delta-G solvation = -24745.028442 eV Core-core repulsion = 21078.297794 eV Total energy + Delta-G solvation = -3666.730648 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.48570 -40.67833 -40.02889 -36.34230 -35.61445 -35.37542 -34.00064 -32.72405 -31.89344 -31.16462 -30.29127 -28.90021 -28.02346 -24.54874 -24.03997 -23.43694 -23.00303 -21.34393 -20.90753 -19.26002 -19.17528 -18.49657 -17.90038 -17.12350 -16.99110 -16.61767 -16.24652 -15.94128 -15.76509 -15.61433 -15.25202 -14.86089 -14.53113 -14.39741 -14.36618 -14.31255 -14.17255 -13.93971 -13.72582 -13.52145 -13.16219 -12.92411 -12.53311 -12.34383 -12.22839 -12.14224 -11.93186 -11.86869 -11.79042 -11.51218 -11.16646 -10.93123 -10.90487 -9.92616 -9.64177 -9.43758 -9.10863 -8.41608 -6.54581 -0.07366 0.43829 0.72695 1.12996 1.34177 1.39039 1.48396 1.53515 1.64344 1.88600 2.01341 2.25828 2.28654 2.89883 2.98585 3.01742 3.57619 3.76366 4.03016 4.05557 4.14031 4.22889 4.30302 4.41497 4.44654 4.46850 4.54500 4.58298 4.64145 4.66171 4.84230 4.85865 4.91826 5.05937 5.09663 5.12429 5.17753 5.21255 5.47050 5.53086 5.55041 5.85471 5.96050 6.01042 6.16843 6.31639 6.48409 6.49995 6.88817 6.97945 7.10502 8.74756 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014079 B = 0.002509 C = 0.002216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.281467 B =11158.546650 C =12632.468109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.060 3.940 3 C -0.309 4.309 4 C 0.303 3.697 5 N -0.635 5.635 6 C 0.522 3.478 7 O -0.541 6.541 8 C -0.008 4.008 9 C -0.155 4.155 10 C -0.148 4.148 11 C -0.013 4.013 12 C -0.112 4.112 13 C -0.122 4.122 14 C -0.111 4.111 15 C -0.121 4.121 16 C -0.109 4.109 17 N -0.365 5.365 18 C 0.237 3.763 19 C -0.553 4.553 20 H 0.021 0.979 21 C 0.024 3.976 22 N -0.935 5.935 23 Si 0.950 3.050 24 H -0.241 1.241 25 H -0.282 1.282 26 H -0.248 1.248 27 N -0.327 5.327 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.078 0.922 31 H 0.164 0.836 32 H 0.428 0.572 33 H 0.165 0.835 34 H 0.155 0.845 35 H 0.122 0.878 36 H 0.150 0.850 37 H 0.155 0.845 38 H 0.154 0.846 39 H 0.132 0.868 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.184 23.421 -9.892 25.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.106 4.106 3 C -0.341 4.341 4 C 0.081 3.919 5 N -0.284 5.284 6 C 0.310 3.690 7 O -0.416 6.416 8 C -0.046 4.046 9 C -0.155 4.155 10 C -0.148 4.148 11 C -0.013 4.013 12 C -0.130 4.130 13 C -0.140 4.140 14 C -0.128 4.128 15 C -0.139 4.139 16 C -0.127 4.127 17 N -0.150 5.150 18 C 0.118 3.882 19 C -0.591 4.591 20 H 0.040 0.960 21 C -0.176 4.176 22 N -0.572 5.572 23 Si 0.771 3.229 24 H -0.165 1.165 25 H -0.208 1.208 26 H -0.171 1.171 27 N -0.152 5.152 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.097 0.903 31 H 0.181 0.819 32 H 0.266 0.734 33 H 0.182 0.818 34 H 0.173 0.827 35 H 0.140 0.860 36 H 0.168 0.832 37 H 0.173 0.827 38 H 0.171 0.829 39 H 0.150 0.850 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.633 22.376 -9.774 24.426 hybrid contribution 0.899 -0.407 0.256 1.020 sum 0.266 21.969 -9.517 23.943 Atomic orbital electron populations 1.20229 0.83994 1.04180 1.03603 1.22873 0.98756 0.90084 0.98864 1.21471 0.89419 1.00722 1.22489 1.18255 0.89621 0.82771 1.01260 1.42864 1.07715 1.05650 1.72135 1.21179 0.92218 0.80749 0.74839 1.90657 1.28685 1.74000 1.48215 1.18702 0.94011 0.82049 1.09804 1.21593 1.00494 0.93366 1.00073 1.19646 0.99497 0.93107 1.02553 1.16192 0.99013 0.87037 0.99073 1.21409 0.96374 0.97195 0.98015 1.21422 1.00437 0.92243 0.99876 1.21702 0.95632 1.01143 0.94366 1.21456 0.97744 0.95084 0.99585 1.21447 0.99767 0.93715 0.97725 1.48836 1.06138 1.02667 1.57366 1.19792 0.80542 0.90764 0.97152 1.21203 1.14013 1.32983 0.90928 0.96044 1.25839 0.97626 0.95143 0.99004 1.70035 1.27804 1.37837 1.21570 0.85691 0.79542 0.78895 0.78775 1.16490 1.20751 1.17136 1.77303 0.86321 1.23377 1.28190 0.89989 0.88622 0.90320 0.81851 0.73360 0.81754 0.82725 0.86043 0.83221 0.82699 0.82856 0.84986 0.93064 0.91048 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.76 10.44 71.24 0.74 -1.02 16 2 C 0.06 2.40 7.21 43.07 0.31 2.71 16 3 C -0.31 -12.73 9.58 22.14 0.21 -12.52 16 4 C 0.30 12.53 7.66 131.32 1.01 13.54 16 5 N -0.63 -20.33 5.42 -308.57 -1.67 -22.00 16 6 C 0.52 15.38 7.78 87.65 0.68 16.06 16 7 O -0.54 -20.19 13.16 -3.06 -0.04 -20.23 16 8 C -0.01 -0.14 6.19 28.04 0.17 0.03 16 9 C -0.15 -3.94 12.58 31.13 0.39 -3.55 16 10 C -0.15 -4.00 13.24 30.02 0.40 -3.61 16 11 C -0.01 -0.31 5.72 -21.41 -0.12 -0.43 16 12 C -0.11 -2.34 9.75 22.52 0.22 -2.12 16 13 C -0.12 -1.84 10.03 22.23 0.22 -1.62 16 14 C -0.11 -1.38 10.04 22.32 0.22 -1.16 16 15 C -0.12 -1.67 10.03 22.23 0.22 -1.45 16 16 C -0.11 -2.06 9.75 22.52 0.22 -1.84 16 17 N -0.36 -16.76 3.60 -348.72 -1.26 -18.02 16 18 C 0.24 10.83 5.07 85.63 0.43 11.26 16 19 C -0.55 -30.59 9.94 25.60 0.25 -30.34 16 20 H 0.02 1.40 8.06 -2.91 -0.02 1.38 16 21 C 0.02 1.30 5.47 84.65 0.46 1.77 16 22 N -0.93 -55.10 13.96 21.45 0.30 -54.80 16 23 Si 0.95 38.58 27.47 68.60 1.88 40.46 16 24 H -0.24 -8.67 7.11 99.48 0.71 -7.96 16 25 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.25 -9.40 6.54 99.48 0.65 -8.75 16 27 N -0.33 -15.25 12.56 -47.45 -0.60 -15.85 16 28 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 29 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.16 6.65 5.83 -2.91 -0.02 6.64 16 32 H 0.43 11.40 7.97 -92.70 -0.74 10.66 16 33 H 0.17 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.16 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.12 2.54 8.06 -2.91 -0.02 2.52 16 36 H 0.15 1.47 8.06 -2.91 -0.02 1.44 16 37 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16 38 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 39 H 0.13 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.05 2.37 7.20 -2.39 -0.02 2.35 16 41 H 0.07 2.72 6.93 -2.39 -0.02 2.70 16 42 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -80.85 372.70 4.94 -75.91 By element: Atomic # 1 Polarization: 28.56 SS G_CDS: 0.27 Total: 28.82 kcal Atomic # 6 Polarization: -20.35 SS G_CDS: 6.06 Total: -14.29 kcal Atomic # 7 Polarization: -107.45 SS G_CDS: -3.22 Total: -110.67 kcal Atomic # 8 Polarization: -20.19 SS G_CDS: -0.04 Total: -20.23 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 1.88 Total: 40.46 kcal Total: -80.85 4.94 -75.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319311890.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.486 kcal (2) G-P(sol) polarization free energy of solvation -80.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds