Wall clock time and date at job start Tue Mar 31 2020 14:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.40476 * 119.84961 * 2 1 4 4 C 1.36015 * 119.69616 * 180.02562 * 3 2 1 5 5 C 1.40939 * 119.32582 * 359.96479 * 4 3 2 6 6 N 1.32557 * 132.32495 * 180.02562 * 5 4 3 7 7 C 1.33507 * 109.15789 * 180.02562 * 6 5 4 8 8 C 1.50707 * 125.68752 * 179.97438 * 7 6 5 9 9 N 1.46505 * 109.47040 * 275.02112 * 8 7 6 10 10 C 1.39777 * 120.00307 * 179.97438 * 9 8 7 11 11 C 1.38943 * 120.00781 * 180.02562 * 10 9 8 12 12 C 1.38014 * 119.99201 * 180.27893 * 11 10 9 13 13 C 1.38893 * 120.00778 * 359.49313 * 12 11 10 14 14 O 1.35796 * 119.99965 * 180.23531 * 13 12 11 15 15 C 1.34809 * 117.00833 * 174.73324 * 14 13 12 16 16 H 1.08003 * 119.99228 * 5.05017 * 15 14 13 17 17 C 1.38622 * 120.00389 * 185.05605 * 15 14 13 18 18 N 1.31580 * 119.99604 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99945 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47283 * 60.00197 * 19 17 15 21 21 H 1.48499 * 109.47057 * 179.97438 * 19 17 15 22 22 H 1.48500 * 109.47547 * 300.00354 * 19 17 15 23 23 C 1.38905 * 120.01236 * 0.50727 * 13 12 11 24 24 C 1.38011 * 120.00235 * 359.74666 * 23 13 12 25 25 C 1.35102 * 108.62877 * 0.24075 * 7 6 5 26 26 N 1.36835 * 107.17778 * 359.61434 * 25 7 6 27 27 C 1.34946 * 119.85078 * 180.02562 * 2 1 3 28 28 H 1.09002 * 109.46972 * 269.97765 * 1 2 3 29 29 H 1.08998 * 109.47137 * 29.98061 * 1 2 3 30 30 H 1.09001 * 109.46440 * 149.97889 * 1 2 3 31 31 H 1.08005 * 120.15129 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.34082 * 180.02562 * 4 3 2 33 33 H 1.08997 * 109.47149 * 155.02748 * 8 7 6 34 34 H 1.08999 * 109.47341 * 35.02197 * 8 7 6 35 35 H 0.97000 * 119.99990 * 0.02562 * 9 8 7 36 36 H 1.08000 * 120.00621 * 0.02562 * 11 10 9 37 37 H 1.08008 * 119.99318 * 179.72823 * 12 11 10 38 38 H 0.97008 * 119.99295 * 180.02562 * 18 17 15 39 39 H 1.07991 * 119.99944 * 179.73156 * 23 13 12 40 40 H 1.07997 * 120.00056 * 179.97438 * 24 23 13 41 41 H 1.08003 * 126.41333 * 179.75850 * 25 7 6 42 42 H 1.08002 * 119.70045 * 359.95613 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2063 1.2184 0.0000 4 6 3.5664 1.2148 -0.0005 5 6 4.2534 -0.0159 -0.0003 6 7 5.5442 -0.3175 -0.0003 7 6 5.6839 -1.6452 -0.0006 8 6 6.9932 -2.3915 -0.0012 9 7 7.4768 -2.5280 -1.3774 10 6 8.6820 -3.1885 -1.6324 11 6 9.1410 -3.3176 -2.9374 12 6 10.3281 -3.9749 -3.1894 13 6 11.0692 -4.4982 -2.1377 14 8 12.2396 -5.1407 -2.3854 15 6 12.9633 -5.5285 -1.3162 16 1 12.5672 -5.3978 -0.3199 17 6 14.2158 -6.0948 -1.4953 18 7 14.6985 -6.2534 -2.7091 19 14 15.2188 -6.6314 -0.0137 20 1 14.4656 -7.6601 0.7478 21 1 16.5110 -7.2024 -0.4712 22 1 15.4769 -5.4590 0.8604 23 6 10.6106 -4.3693 -0.8329 24 6 9.4209 -3.7167 -0.5808 25 6 4.4558 -2.2084 -0.0062 26 7 3.5435 -1.1885 -0.0006 27 6 2.1788 -1.1704 -0.0005 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3632 -0.8898 -0.5142 31 1 1.6662 2.1538 0.0004 32 1 4.1144 2.1453 -0.0001 33 1 6.8477 -3.3808 0.4325 34 1 7.7258 -1.8404 0.5884 35 1 6.9611 -2.1593 -2.1115 36 1 8.5669 -2.9072 -3.7550 37 1 10.6828 -4.0790 -4.2043 38 1 15.5749 -6.6501 -2.8344 39 1 11.1847 -4.7801 -0.0157 40 1 9.0641 -3.6169 0.4336 41 1 4.2353 -3.2656 -0.0116 42 1 1.6314 -2.1015 -0.0002 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001321933881.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:58 Heat of formation + Delta-G solvation = 95.757111 kcal Electronic energy + Delta-G solvation = -24619.846094 eV Core-core repulsion = 20953.079760 eV Total energy + Delta-G solvation = -3666.766334 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -43.12854 -38.98364 -38.33401 -36.94328 -34.60461 -33.87268 -32.50435 -31.94439 -30.12904 -29.72989 -28.15594 -26.88505 -25.40709 -24.86764 -23.60100 -22.45641 -22.00751 -20.80197 -20.27617 -18.17187 -17.83860 -17.20510 -17.09323 -16.32301 -15.89954 -15.57294 -15.15192 -15.03477 -14.41357 -14.39125 -14.05527 -13.87006 -13.71792 -13.57851 -13.26036 -13.06909 -12.73380 -12.66645 -12.50969 -12.20426 -12.01347 -11.69082 -11.50065 -11.37952 -11.33807 -11.20603 -10.87955 -10.54890 -10.32880 -10.30984 -9.17202 -9.11289 -8.97278 -8.38200 -8.18859 -8.09538 -6.32542 -6.26538 -3.83688 0.34233 0.88681 2.23589 2.27886 2.41207 2.65107 3.13098 3.22616 3.24162 3.26395 3.80488 3.95688 4.10379 4.17138 4.23216 4.33386 4.55750 4.74838 4.78687 4.93271 4.99561 5.02131 5.07307 5.25704 5.37013 5.43825 5.49392 5.56918 5.61048 5.73665 5.77251 5.82212 5.84682 6.11206 6.27896 6.29691 6.37145 6.54872 6.72742 6.89802 7.05696 7.17337 7.40111 7.53262 7.61266 7.68735 8.05085 8.17614 8.31955 9.19241 9.94536 10.92052 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.037604 B = 0.001833 C = 0.001804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.417797 B =15269.335590 C =15516.927969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.110 4.110 3 C -0.103 4.103 4 C -0.072 4.072 5 C 0.216 3.784 6 N -0.475 5.475 7 C 0.052 3.948 8 C 0.216 3.784 9 N -0.753 5.753 10 C 0.127 3.873 11 C -0.143 4.143 12 C -0.148 4.148 13 C 0.112 3.888 14 O -0.189 6.189 15 C -0.386 4.386 16 H 0.087 0.913 17 C 0.036 3.964 18 N -0.870 5.870 19 Si 0.937 3.063 20 H -0.272 1.272 21 H -0.280 1.280 22 H -0.272 1.272 23 C -0.190 4.190 24 C -0.145 4.145 25 C -0.078 4.078 26 N -0.361 5.361 27 C 0.051 3.949 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.069 0.931 31 H 0.142 0.858 32 H 0.152 0.848 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.391 0.609 36 H 0.109 0.891 37 H 0.117 0.883 38 H 0.267 0.733 39 H 0.127 0.873 40 H 0.107 0.893 41 H 0.185 0.815 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.700 12.114 6.812 32.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.114 4.114 3 C -0.127 4.127 4 C -0.092 4.092 5 C -0.028 4.028 6 N -0.195 5.195 7 C -0.081 4.081 8 C 0.090 3.910 9 N -0.389 5.389 10 C 0.029 3.971 11 C -0.165 4.165 12 C -0.168 4.168 13 C 0.060 3.940 14 O -0.094 6.094 15 C -0.463 4.463 16 H 0.105 0.895 17 C -0.167 4.167 18 N -0.507 5.507 19 Si 0.763 3.237 20 H -0.197 1.197 21 H -0.205 1.205 22 H -0.197 1.197 23 C -0.210 4.210 24 C -0.167 4.167 25 C -0.211 4.211 26 N -0.032 5.032 27 C -0.071 4.071 28 H 0.094 0.906 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.160 0.840 32 H 0.170 0.830 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.225 0.775 36 H 0.127 0.873 37 H 0.135 0.865 38 H 0.077 0.923 39 H 0.144 0.856 40 H 0.125 0.875 41 H 0.202 0.798 42 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -28.695 12.408 6.706 31.974 hybrid contribution -0.399 -0.732 0.590 1.021 sum -29.094 11.676 7.296 32.187 Atomic orbital electron populations 1.20682 0.88992 1.03517 1.02927 1.19481 0.97266 0.91716 1.02891 1.20971 0.93370 0.98131 1.00181 1.20297 0.93625 0.94869 1.00410 1.21011 0.87548 0.87452 1.06766 1.70700 1.13162 1.14155 1.21465 1.20926 0.94591 0.89777 1.02780 1.19303 0.88665 0.97058 0.85952 1.44107 1.23411 1.65819 1.05604 1.17370 0.87746 0.98537 0.93412 1.20104 0.97592 1.04688 0.94139 1.19995 0.95750 1.03193 0.97879 1.19236 0.88603 0.93589 0.92573 1.83981 1.26943 1.64472 1.34038 1.21185 0.98542 1.40568 0.85975 0.89517 1.25204 0.96162 0.97330 0.98022 1.70046 1.18105 1.42060 1.20443 0.85843 0.78849 0.79009 0.80041 1.19729 1.20473 1.19694 1.20995 0.97724 1.05200 0.97098 1.20287 0.96316 1.03335 0.96741 1.22540 0.87893 0.93841 1.16793 1.42787 1.05938 1.08909 1.45562 1.21408 0.80895 1.00430 1.04414 0.90632 0.90666 0.91160 0.84013 0.83044 0.91347 0.91254 0.77536 0.87263 0.86495 0.92325 0.85553 0.87474 0.79786 0.82126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.27 10.00 36.01 0.36 0.09 16 2 C -0.11 -0.62 5.85 -104.94 -0.61 -1.23 16 3 C -0.10 -0.61 9.74 -39.54 -0.38 -1.00 16 4 C -0.07 -0.61 10.11 -39.36 -0.40 -1.01 16 5 C 0.22 2.53 7.81 -156.04 -1.22 1.31 16 6 N -0.47 -6.70 11.32 -9.00 -0.10 -6.80 16 7 C 0.05 0.66 6.43 -82.98 -0.53 0.13 16 8 C 0.22 2.83 5.44 -5.19 -0.03 2.81 16 9 N -0.75 -11.23 5.73 -59.75 -0.34 -11.57 16 10 C 0.13 2.31 6.66 -83.71 -0.56 1.75 16 11 C -0.14 -2.70 9.89 -39.40 -0.39 -3.09 16 12 C -0.15 -3.26 9.98 -39.42 -0.39 -3.66 16 13 C 0.11 2.82 6.65 -39.09 -0.26 2.56 16 14 O -0.19 -5.60 9.75 -0.04 0.00 -5.60 16 15 C -0.39 -11.17 9.48 30.87 0.29 -10.87 16 16 H 0.09 2.32 5.20 -52.48 -0.27 2.05 16 17 C 0.04 1.01 5.49 -17.52 -0.10 0.92 16 18 N -0.87 -26.39 13.67 55.48 0.76 -25.63 16 19 Si 0.94 21.28 29.55 -169.99 -5.02 16.26 16 20 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 C -0.19 -4.29 9.16 -39.42 -0.36 -4.65 16 24 C -0.14 -2.78 9.30 -39.40 -0.37 -3.14 16 25 C -0.08 -0.81 11.66 -16.43 -0.19 -1.00 16 26 N -0.36 -3.60 2.95 -62.66 -0.18 -3.79 16 27 C 0.05 0.35 10.56 -16.65 -0.18 0.17 16 28 H 0.08 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.13 8.09 -51.93 -0.42 -0.29 16 30 H 0.07 0.13 8.07 -51.93 -0.42 -0.29 16 31 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 32 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.07 0.81 7.95 -51.93 -0.41 0.39 16 34 H 0.07 0.98 7.95 -51.93 -0.41 0.57 16 35 H 0.39 5.52 8.48 -40.82 -0.35 5.18 16 36 H 0.11 1.76 8.06 -52.49 -0.42 1.33 16 37 H 0.12 2.48 8.06 -52.48 -0.42 2.05 16 38 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 39 H 0.13 2.84 5.63 -52.49 -0.30 2.55 16 40 H 0.11 1.78 6.73 -52.49 -0.35 1.42 16 41 H 0.19 1.38 8.06 -52.48 -0.42 0.96 16 42 H 0.16 0.64 8.06 -52.49 -0.42 0.22 16 LS Contribution 361.37 15.07 5.45 5.45 Total: -1.00 -35.15 361.37 -9.79 -44.94 By element: Atomic # 1 Polarization: 11.70 SS G_CDS: -5.03 Total: 6.67 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: -5.31 Total: -19.92 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: 0.13 Total: -47.79 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: 0.00 Total: -5.60 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.15 -9.79 -44.94 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321933881.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.694 kcal (2) G-P(sol) polarization free energy of solvation -35.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds