Wall clock time and date at job start Tue Mar 31 2020 15:04:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.35038 * 126.38212 * 2 1 4 4 H 0.96993 * 124.88439 * 0.02562 * 3 2 1 5 5 N 1.28465 * 110.22808 * 179.78777 * 3 2 1 6 6 C 1.31814 * 110.07554 * 0.38734 * 5 3 2 7 7 C 1.47710 * 126.51991 * 179.88430 * 6 5 3 8 8 O 1.21567 * 119.99870 * 179.68853 * 7 6 5 9 9 N 1.34778 * 119.99957 * 359.68803 * 7 6 5 10 10 C 1.46500 * 119.99805 * 179.97438 * 9 7 6 11 11 C 1.53065 * 109.45413 * 84.79314 * 10 9 7 12 12 C 1.53192 * 109.29648 * 181.24177 * 11 10 9 13 13 N 1.46922 * 108.89269 * 305.57538 * 12 11 10 14 14 C 1.36942 * 120.62796 * 233.51528 * 13 12 11 15 15 H 1.08007 * 119.99636 * 151.83092 * 14 13 12 16 16 C 1.38806 * 120.00203 * 331.83144 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08250 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07925 * 16 14 13 19 19 H 1.48503 * 109.47195 * 89.99708 * 18 16 14 20 20 H 1.48498 * 109.47355 * 210.00264 * 18 16 14 21 21 H 1.48504 * 109.46850 * 330.00278 * 18 16 14 22 22 C 1.46924 * 118.73925 * 53.53382 * 13 12 11 23 23 C 1.53049 * 109.45577 * 204.99994 * 10 9 7 24 24 C 1.35363 * 126.38771 * 180.02562 * 2 1 3 25 25 N 1.48002 * 127.24911 * 0.02562 * 24 2 1 26 26 O 1.21809 * 120.00045 * 269.97972 * 25 24 2 27 27 O 1.21799 * 120.00523 * 89.97961 * 25 24 2 28 28 H 1.09007 * 109.46822 * 269.97604 * 1 2 3 29 29 H 1.08996 * 109.47334 * 29.97912 * 1 2 3 30 30 H 1.08999 * 109.46911 * 149.98533 * 1 2 3 31 31 H 0.96998 * 120.00301 * 0.02562 * 9 7 6 32 32 H 1.08992 * 109.46107 * 324.96879 * 10 9 7 33 33 H 1.09005 * 109.39523 * 61.36241 * 11 10 9 34 34 H 1.09004 * 109.62174 * 301.25928 * 11 10 9 35 35 H 1.09003 * 109.58615 * 185.71531 * 12 11 10 36 36 H 1.08998 * 109.58372 * 65.43477 * 12 11 10 37 37 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 38 38 H 1.09007 * 109.58325 * 66.18371 * 22 13 12 39 39 H 1.08996 * 109.58499 * 186.46256 * 22 13 12 40 40 H 1.09002 * 109.49883 * 58.66699 * 23 10 9 41 41 H 1.08993 * 109.49715 * 298.56552 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0872 0.0000 4 1 1.9965 2.0057 0.0004 5 7 3.5419 0.7298 0.0045 6 6 3.6321 -0.5853 -0.0007 7 6 4.8765 -1.3811 -0.0005 8 8 4.8214 -2.5955 0.0000 9 7 6.0730 -0.7607 -0.0009 10 6 7.3073 -1.5500 -0.0001 11 6 7.6663 -1.9362 -1.4370 12 6 8.9400 -2.7873 -1.4292 13 7 9.9963 -2.0563 -0.7161 14 6 11.2138 -1.8395 -1.3044 15 1 11.7997 -0.9746 -1.0301 16 6 11.6949 -2.7313 -2.2531 17 7 11.1688 -3.9337 -2.3526 18 14 13.0889 -2.2249 -3.3888 19 1 14.3893 -2.5746 -2.7627 20 1 12.9557 -2.9379 -4.6846 21 1 13.0300 -0.7594 -3.6218 22 6 9.7217 -1.5627 0.6402 23 6 8.4413 -0.7223 0.6093 24 6 2.3100 -1.0897 -0.0005 25 7 1.8931 -2.5098 -0.0016 26 8 1.7214 -3.0950 1.0528 27 8 1.7215 -3.0933 -1.0569 28 1 -0.3633 -0.0004 1.0278 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8899 -0.5141 31 1 6.1170 0.2082 -0.0009 32 1 7.1597 -2.4541 0.5905 33 1 7.8360 -1.0329 -2.0230 34 1 6.8494 -2.5079 -1.8774 35 1 9.2570 -2.9800 -2.4542 36 1 8.7445 -3.7328 -0.9234 37 1 11.5052 -4.5570 -3.0153 38 1 9.5883 -2.4073 1.3163 39 1 10.5556 -0.9495 0.9816 40 1 8.1734 -0.4300 1.6246 41 1 8.6060 0.1696 0.0048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001322565621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:21 Heat of formation + Delta-G solvation = 59.063548 kcal Electronic energy + Delta-G solvation = -27433.947427 eV Core-core repulsion = 23354.740677 eV Total energy + Delta-G solvation = -4079.206749 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -43.88874 -41.84827 -39.74474 -37.39093 -36.50503 -34.62646 -33.87986 -33.14003 -32.09158 -30.12086 -29.59190 -28.58868 -26.40080 -25.62896 -24.24607 -22.28534 -21.97761 -21.80637 -20.33678 -19.43800 -19.22058 -18.83254 -18.07222 -17.44271 -16.91467 -16.79637 -16.66472 -15.90956 -14.85386 -14.76192 -14.37053 -14.07768 -13.88229 -13.74919 -13.52751 -13.39896 -13.00878 -12.65413 -12.45535 -12.06173 -11.70547 -11.52604 -11.29815 -11.17815 -11.11957 -10.99071 -10.71387 -10.50456 -10.45397 -10.30103 -10.26556 -10.11718 -10.08207 -9.78283 -9.59136 -8.84589 -8.43713 -6.68445 -5.77992 -3.21386 0.45930 0.69482 0.83256 1.01626 2.01159 2.85635 2.98923 3.38195 3.45257 3.47128 3.61025 3.65862 3.90935 4.42800 4.49847 4.58252 4.70352 4.88628 5.04018 5.25880 5.39273 5.42876 5.58573 5.77692 5.90096 6.03627 6.17921 6.20723 6.23702 6.38077 6.54908 6.63421 6.71421 6.76175 6.83719 6.91658 7.35856 7.47893 7.54522 7.68832 7.79956 8.05809 8.45466 9.21126 9.84347 10.41016 11.30668 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024094 B = 0.002747 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.844189 B =10190.418986 C =10586.526515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.094 3.906 3 N -0.363 5.363 4 H 0.461 0.539 5 N -0.229 5.229 6 C 0.056 3.944 7 C 0.588 3.412 8 O -0.515 6.515 9 N -0.699 5.699 10 C 0.149 3.851 11 C -0.147 4.147 12 C 0.174 3.826 13 N -0.592 5.592 14 C -0.256 4.256 15 H 0.066 0.934 16 C 0.003 3.997 17 N -0.900 5.900 18 Si 0.902 3.098 19 H -0.287 1.287 20 H -0.289 1.289 21 H -0.280 1.280 22 C 0.149 3.851 23 C -0.138 4.138 24 C -0.107 4.107 25 N 0.057 4.943 26 O -0.126 6.126 27 O -0.125 6.125 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.093 0.907 31 H 0.403 0.597 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.091 0.909 36 H 0.022 0.978 37 H 0.255 0.745 38 H 0.021 0.979 39 H 0.060 0.940 40 H 0.057 0.943 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.853 14.059 5.820 27.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.036 4.036 3 N -0.078 5.078 4 H 0.309 0.691 5 N -0.064 5.064 6 C -0.108 4.108 7 C 0.369 3.631 8 O -0.388 6.388 9 N -0.349 5.349 10 C 0.047 3.953 11 C -0.188 4.188 12 C 0.048 3.952 13 N -0.315 5.315 14 C -0.386 4.386 15 H 0.083 0.917 16 C -0.196 4.196 17 N -0.544 5.544 18 Si 0.732 3.268 19 H -0.214 1.214 20 H -0.215 1.215 21 H -0.205 1.205 22 C 0.021 3.979 23 C -0.178 4.178 24 C -0.200 4.200 25 N 0.591 4.409 26 O -0.350 6.350 27 O -0.349 6.349 28 H 0.118 0.882 29 H 0.112 0.888 30 H 0.112 0.888 31 H 0.237 0.763 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.040 0.960 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -21.879 14.728 5.707 26.984 hybrid contribution -0.037 0.277 -0.662 0.719 sum -21.915 15.005 5.045 27.035 Atomic orbital electron populations 1.20699 0.84373 1.05766 1.05230 1.20901 0.95910 0.85349 1.01429 1.43145 1.02580 1.09570 1.52484 0.69108 1.73837 1.01111 1.12802 1.18639 1.22122 0.93383 0.89419 1.05877 1.16755 0.81676 0.86503 0.78188 1.90925 1.86224 1.12205 1.49419 1.46170 1.05293 1.10839 1.72557 1.21234 0.80862 0.94457 0.98794 1.22598 1.00567 1.01297 0.94318 1.20755 0.83875 0.91018 0.99583 1.44102 1.11437 1.65201 1.10763 1.19147 0.95494 1.04422 1.19497 0.91664 1.25072 0.98293 0.94604 1.01604 1.70030 1.44003 1.04474 1.35900 0.86310 0.82033 0.77965 0.80516 1.21365 1.21537 1.20527 1.20837 0.93380 0.95220 0.88416 1.22350 0.96567 0.99611 0.99298 1.20506 0.93991 0.83632 1.21847 1.42099 0.97736 1.00538 1.00509 1.94572 1.52979 1.66511 1.20930 1.94584 1.52944 1.66620 1.20758 0.88215 0.88814 0.88813 0.76269 0.89534 0.92503 0.92641 0.89134 0.95952 0.93510 0.96073 0.92181 0.92453 0.91671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.34 10.44 36.00 0.38 0.04 16 2 C 0.09 0.69 7.23 -82.21 -0.59 0.09 16 3 N -0.36 -2.08 6.83 33.50 0.23 -1.85 16 4 H 0.46 0.42 8.96 -190.45 -1.71 -1.29 16 5 N -0.23 -2.24 11.92 33.42 0.40 -1.84 16 6 C 0.06 0.75 7.13 -82.76 -0.59 0.16 16 7 C 0.59 9.72 7.79 -12.39 -0.10 9.62 16 8 O -0.51 -10.56 16.13 5.31 0.09 -10.47 16 9 N -0.70 -10.49 5.08 -54.74 -0.28 -10.77 16 10 C 0.15 2.65 2.41 -67.87 -0.16 2.48 16 11 C -0.15 -3.00 5.66 -26.60 -0.15 -3.15 16 12 C 0.17 4.28 5.30 -3.71 -0.02 4.26 16 13 N -0.59 -14.83 3.00 -172.32 -0.52 -15.35 16 14 C -0.26 -7.00 9.58 -15.06 -0.14 -7.14 16 15 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 16 C 0.00 0.09 4.92 -17.43 -0.09 0.00 16 17 N -0.90 -26.46 11.20 55.49 0.62 -25.84 16 18 Si 0.90 21.71 29.59 -169.99 -5.03 16.68 16 19 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 C 0.15 3.05 6.52 -3.71 -0.02 3.03 16 23 C -0.14 -2.30 5.55 -26.61 -0.15 -2.45 16 24 C -0.11 -1.33 6.75 -79.74 -0.54 -1.87 16 25 N 0.06 0.87 3.94 34.06 0.13 1.00 16 26 O -0.13 -1.99 19.26 -29.46 -0.57 -2.56 16 27 O -0.12 -2.01 19.25 -29.46 -0.57 -2.58 16 28 H 0.10 0.21 8.14 -51.92 -0.42 -0.22 16 29 H 0.09 0.02 8.14 -51.93 -0.42 -0.40 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.40 4.98 8.33 -40.82 -0.34 4.64 16 32 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.09 2.48 6.06 -51.93 -0.31 2.17 16 36 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 40 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -35.73 355.11 -8.84 -44.57 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -6.52 Total: -1.42 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -2.18 Total: 5.08 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: 0.59 Total: -54.64 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: -1.05 Total: -15.61 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.73 -8.84 -44.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322565621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.631 kcal (2) G-P(sol) polarization free energy of solvation -35.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds