Wall clock time and date at job start Tue Mar 31 2020 15:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.35038 * 126.38212 * 2 1 4 4 H 0.96993 * 124.88439 * 0.02562 * 3 2 1 5 5 N 1.28465 * 110.22808 * 179.78777 * 3 2 1 6 6 C 1.31814 * 110.07554 * 0.38734 * 5 3 2 7 7 C 1.47710 * 126.51991 * 179.88430 * 6 5 3 8 8 O 1.21567 * 119.99870 * 179.68853 * 7 6 5 9 9 N 1.34778 * 119.99957 * 359.68803 * 7 6 5 10 10 C 1.46500 * 119.99805 * 179.97438 * 9 7 6 11 11 C 1.53065 * 109.45413 * 84.79314 * 10 9 7 12 12 C 1.53192 * 109.29648 * 181.24177 * 11 10 9 13 13 N 1.46922 * 108.89269 * 305.57538 * 12 11 10 14 14 C 1.36942 * 120.62796 * 233.51528 * 13 12 11 15 15 H 1.08007 * 119.99636 * 151.83092 * 14 13 12 16 16 C 1.38806 * 120.00203 * 331.83144 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08250 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07925 * 16 14 13 19 19 H 1.48503 * 109.47195 * 89.99708 * 18 16 14 20 20 H 1.48498 * 109.47355 * 210.00264 * 18 16 14 21 21 H 1.48504 * 109.46850 * 330.00278 * 18 16 14 22 22 C 1.46924 * 118.73925 * 53.53382 * 13 12 11 23 23 C 1.53049 * 109.45577 * 204.99994 * 10 9 7 24 24 C 1.35363 * 126.38771 * 180.02562 * 2 1 3 25 25 N 1.48002 * 127.24911 * 0.02562 * 24 2 1 26 26 O 1.21809 * 120.00045 * 269.97972 * 25 24 2 27 27 O 1.21799 * 120.00523 * 89.97961 * 25 24 2 28 28 H 1.09007 * 109.46822 * 269.97604 * 1 2 3 29 29 H 1.08996 * 109.47334 * 29.97912 * 1 2 3 30 30 H 1.08999 * 109.46911 * 149.98533 * 1 2 3 31 31 H 0.96998 * 120.00301 * 0.02562 * 9 7 6 32 32 H 1.08992 * 109.46107 * 324.96879 * 10 9 7 33 33 H 1.09005 * 109.39523 * 61.36241 * 11 10 9 34 34 H 1.09004 * 109.62174 * 301.25928 * 11 10 9 35 35 H 1.09003 * 109.58615 * 185.71531 * 12 11 10 36 36 H 1.08998 * 109.58372 * 65.43477 * 12 11 10 37 37 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 38 38 H 1.09007 * 109.58325 * 66.18371 * 22 13 12 39 39 H 1.08996 * 109.58499 * 186.46256 * 22 13 12 40 40 H 1.09002 * 109.49883 * 58.66699 * 23 10 9 41 41 H 1.08993 * 109.49715 * 298.56552 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3080 1.0872 0.0000 4 1 1.9965 2.0057 0.0004 5 7 3.5419 0.7298 0.0045 6 6 3.6321 -0.5853 -0.0007 7 6 4.8765 -1.3811 -0.0005 8 8 4.8214 -2.5955 0.0000 9 7 6.0730 -0.7607 -0.0009 10 6 7.3073 -1.5500 -0.0001 11 6 7.6663 -1.9362 -1.4370 12 6 8.9400 -2.7873 -1.4292 13 7 9.9963 -2.0563 -0.7161 14 6 11.2138 -1.8395 -1.3044 15 1 11.7997 -0.9746 -1.0301 16 6 11.6949 -2.7313 -2.2531 17 7 11.1688 -3.9337 -2.3526 18 14 13.0889 -2.2249 -3.3888 19 1 14.3893 -2.5746 -2.7627 20 1 12.9557 -2.9379 -4.6846 21 1 13.0300 -0.7594 -3.6218 22 6 9.7217 -1.5627 0.6402 23 6 8.4413 -0.7223 0.6093 24 6 2.3100 -1.0897 -0.0005 25 7 1.8931 -2.5098 -0.0016 26 8 1.7214 -3.0950 1.0528 27 8 1.7215 -3.0933 -1.0569 28 1 -0.3633 -0.0004 1.0278 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8899 -0.5141 31 1 6.1170 0.2082 -0.0009 32 1 7.1597 -2.4541 0.5905 33 1 7.8360 -1.0329 -2.0230 34 1 6.8494 -2.5079 -1.8774 35 1 9.2570 -2.9800 -2.4542 36 1 8.7445 -3.7328 -0.9234 37 1 11.5052 -4.5570 -3.0153 38 1 9.5883 -2.4073 1.3163 39 1 10.5556 -0.9495 0.9816 40 1 8.1734 -0.4300 1.6246 41 1 8.6060 0.1696 0.0048 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001322565621.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:20 Heat of formation + Delta-G solvation = 32.596359 kcal Electronic energy + Delta-G solvation = -27435.095130 eV Core-core repulsion = 23354.740677 eV Total energy + Delta-G solvation = -4080.354453 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.67168 -42.93839 -41.11095 -39.04993 -37.66345 -36.22848 -34.64546 -34.13918 -33.69537 -31.84080 -31.30544 -29.32865 -27.37804 -27.16266 -25.65764 -23.98365 -23.48536 -22.83647 -21.63467 -20.97764 -20.14640 -19.96077 -19.08034 -18.79754 -18.28238 -17.82857 -17.55803 -17.35204 -16.75722 -16.06980 -15.80161 -15.39196 -15.33094 -14.85602 -14.70692 -14.41884 -14.14501 -14.10283 -13.78509 -13.24313 -13.06232 -12.89912 -12.84986 -12.74632 -12.56993 -12.40248 -12.33407 -12.19866 -12.11746 -11.93587 -11.71794 -11.61563 -11.34400 -11.30226 -10.81383 -10.60425 -10.22837 -8.73406 -7.88500 -5.35240 -0.73345 -0.19586 0.04519 0.11245 1.32665 1.47113 1.48820 1.58591 1.75007 1.79378 2.51062 2.75200 2.99953 3.20396 3.28065 3.59736 3.65427 3.77483 3.93632 3.98098 4.24602 4.40126 4.41695 4.46391 4.60685 4.69502 4.77716 4.83935 4.96049 5.00122 5.07995 5.08876 5.26386 5.29895 5.41732 5.44144 5.62324 5.66841 6.00835 6.28771 6.32880 6.37355 6.84679 7.11717 7.82379 8.35448 9.18908 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024094 B = 0.002747 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.844189 B =10190.418986 C =10586.526515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C 0.132 3.868 3 N -0.329 5.329 4 H 0.486 0.514 5 N -0.212 5.212 6 C 0.026 3.974 7 C 0.585 3.415 8 O -0.566 6.566 9 N -0.683 5.683 10 C 0.160 3.840 11 C -0.132 4.132 12 C 0.184 3.816 13 N -0.609 5.609 14 C -0.262 4.262 15 H 0.075 0.925 16 C -0.055 4.055 17 N -0.939 5.939 18 Si 0.970 3.030 19 H -0.284 1.284 20 H -0.296 1.296 21 H -0.266 1.266 22 C 0.142 3.858 23 C -0.121 4.121 24 C -0.147 4.147 25 N 0.060 4.940 26 O -0.142 6.142 27 O -0.155 6.155 28 H 0.121 0.879 29 H 0.136 0.864 30 H 0.081 0.919 31 H 0.420 0.580 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.044 0.956 35 H 0.057 0.943 36 H -0.010 1.010 37 H 0.249 0.751 38 H 0.012 0.988 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.423 18.474 6.517 31.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.001 3.999 3 N -0.049 5.049 4 H 0.341 0.659 5 N -0.048 5.048 6 C -0.136 4.136 7 C 0.369 3.631 8 O -0.442 6.442 9 N -0.334 5.334 10 C 0.056 3.944 11 C -0.172 4.172 12 C 0.057 3.943 13 N -0.333 5.333 14 C -0.392 4.392 15 H 0.093 0.907 16 C -0.250 4.250 17 N -0.585 5.585 18 Si 0.798 3.202 19 H -0.210 1.210 20 H -0.223 1.223 21 H -0.191 1.191 22 C 0.016 3.984 23 C -0.160 4.160 24 C -0.240 4.240 25 N 0.590 4.410 26 O -0.366 6.366 27 O -0.376 6.376 28 H 0.139 0.861 29 H 0.155 0.845 30 H 0.100 0.900 31 H 0.258 0.742 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.008 0.992 37 H 0.058 0.942 38 H 0.030 0.970 39 H 0.090 0.910 40 H 0.112 0.888 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.472 19.234 6.412 31.016 hybrid contribution 0.364 -1.000 -0.800 1.331 sum -23.108 18.234 5.613 29.966 Atomic orbital electron populations 1.21006 0.80974 1.07310 1.06976 1.21405 0.97389 0.83700 0.97423 1.43273 1.01161 1.10602 1.49848 0.65945 1.73761 1.02939 1.10649 1.17477 1.21527 0.92160 0.90524 1.09431 1.17153 0.82866 0.86204 0.76887 1.90898 1.87127 1.14620 1.51601 1.45826 1.04069 1.11365 1.72105 1.20871 0.82623 0.94523 0.96422 1.22330 0.97825 1.00479 0.96543 1.20437 0.85834 0.90801 0.97205 1.44348 1.10966 1.65267 1.12672 1.19566 0.96048 1.04328 1.19297 0.90691 1.25906 1.01130 0.94582 1.03391 1.70209 1.45913 1.05697 1.36667 0.85240 0.78975 0.78042 0.77953 1.21026 1.22273 1.19057 1.21045 0.95912 0.95554 0.85918 1.22153 0.93567 0.98638 1.01632 1.20688 0.94894 0.82583 1.25873 1.42411 0.96866 1.01797 0.99889 1.94538 1.53302 1.67749 1.21029 1.94562 1.54094 1.67949 1.20961 0.86123 0.84532 0.89972 0.74232 0.91933 0.91649 0.93772 0.92496 0.99234 0.94151 0.96951 0.90983 0.88778 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.24 10.44 71.24 0.74 0.50 16 2 C 0.13 1.48 7.23 41.40 0.30 1.78 16 3 N -0.33 -2.30 6.83 -47.93 -0.33 -2.63 16 4 H 0.49 -1.91 8.96 -220.00 -1.97 -3.88 16 5 N -0.21 -3.44 11.92 -48.17 -0.57 -4.02 16 6 C 0.03 0.67 7.13 42.46 0.30 0.98 16 7 C 0.59 19.40 7.79 86.75 0.68 20.08 16 8 O -0.57 -24.29 16.13 -3.93 -0.06 -24.35 16 9 N -0.68 -19.70 5.08 -445.36 -2.26 -21.96 16 10 C 0.16 5.62 2.41 45.03 0.11 5.73 16 11 C -0.13 -5.48 5.66 30.68 0.17 -5.30 16 12 C 0.18 9.49 5.30 86.36 0.46 9.95 16 13 N -0.61 -30.94 3.00 -699.10 -2.09 -33.03 16 14 C -0.26 -14.40 9.58 84.03 0.81 -13.60 16 15 H 0.08 3.90 7.89 -2.91 -0.02 3.88 16 16 C -0.05 -3.12 4.92 84.86 0.42 -2.70 16 17 N -0.94 -57.46 11.20 21.65 0.24 -57.22 16 18 Si 0.97 45.20 29.59 68.60 2.03 47.23 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.30 -14.00 7.11 99.48 0.71 -13.30 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 22 C 0.14 5.71 6.52 86.36 0.56 6.27 16 23 C -0.12 -3.73 5.55 30.67 0.17 -3.56 16 24 C -0.15 -3.52 6.75 36.52 0.25 -3.27 16 25 N 0.06 1.87 3.94 -46.14 -0.18 1.69 16 26 O -0.14 -4.65 19.26 18.87 0.36 -4.28 16 27 O -0.16 -5.26 19.25 18.89 0.36 -4.89 16 28 H 0.12 -0.07 8.14 -2.38 -0.02 -0.09 16 29 H 0.14 -0.78 8.14 -2.39 -0.02 -0.80 16 30 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.42 9.22 8.33 -92.71 -0.77 8.45 16 32 H 0.06 2.55 7.58 -2.39 -0.02 2.53 16 33 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 34 H 0.04 1.91 8.14 -2.38 -0.02 1.89 16 35 H 0.06 3.30 6.06 -2.39 -0.01 3.29 16 36 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 37 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 38 H 0.01 0.53 8.14 -2.38 -0.02 0.51 16 39 H 0.07 2.72 7.93 -2.39 -0.02 2.70 16 40 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 41 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -84.42 355.11 0.82 -83.60 By element: Atomic # 1 Polarization: 4.66 SS G_CDS: -1.64 Total: 3.02 kcal Atomic # 6 Polarization: 11.89 SS G_CDS: 4.96 Total: 16.85 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -5.19 Total: -117.17 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: 0.66 Total: -33.53 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -84.42 0.82 -83.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001322565621.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.194 kcal (2) G-P(sol) polarization free energy of solvation -84.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds