Wall clock time and date at job start Tue Mar 31 2020 14:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 N 1.46892 * 109.47065 * 270.02155 * 15 14 13 17 17 C 1.46895 * 111.00142 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47549 * 180.02562 * 17 16 15 19 19 C 1.34948 * 119.69446 * 95.00207 * 18 17 16 20 20 C 1.40478 * 120.29810 * 180.02562 * 19 18 17 21 21 C 1.36015 * 119.69614 * 359.97438 * 20 19 18 22 22 C 1.40939 * 119.32625 * 0.02562 * 21 20 19 23 23 N 1.32560 * 132.32784 * 180.02562 * 22 21 20 24 24 C 1.33514 * 109.15727 * 179.97438 * 23 22 21 25 25 C 1.35104 * 108.62967 * 359.97438 * 24 23 22 26 26 N 1.36484 * 119.69518 * 274.73001 * 18 17 16 27 27 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 28 28 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 30 30 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 31 31 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 32 32 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 33 33 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 34 34 H 1.00902 * 111.00348 * 56.04494 * 16 15 14 35 35 H 1.09005 * 109.47317 * 300.00577 * 17 16 15 36 36 H 1.09000 * 109.47422 * 59.99787 * 17 16 15 37 37 H 1.08002 * 119.85118 * 0.02562 * 19 18 17 38 38 H 1.08000 * 120.15090 * 179.97438 * 20 19 18 39 39 H 1.07995 * 120.34028 * 180.02562 * 21 20 19 40 40 H 1.08004 * 125.68493 * 179.97438 * 24 23 22 41 41 H 1.07999 * 126.41582 * 179.97438 * 25 24 23 42 42 H 1.08006 * 120.03219 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 7 1.2708 -7.7904 -0.8705 17 6 0.6011 -9.0947 -0.7809 18 6 0.3830 -9.6438 -2.1672 19 6 1.2814 -10.5010 -2.6957 20 6 1.0910 -11.0201 -3.9871 21 6 -0.0053 -10.6555 -4.7050 22 6 -0.9343 -9.7594 -4.1391 23 7 -2.0660 -9.2410 -4.5949 24 6 -2.5842 -8.4347 -3.6654 25 6 -1.7676 -8.4360 -2.5891 26 7 -0.7241 -9.2740 -2.8745 27 6 1.4365 -4.7345 0.2256 28 1 -0.4849 0.8401 -0.0004 29 1 3.9527 -2.4857 -0.0140 30 1 5.2811 -4.5473 0.1885 31 1 4.1534 -6.7248 0.4030 32 1 2.1300 -7.9003 1.0435 33 1 0.5456 -7.0924 0.9735 34 1 2.1349 -7.8619 -1.3866 35 1 1.2237 -9.7845 -0.2110 36 1 -0.3604 -8.9760 -0.2813 37 1 2.1507 -10.7891 -2.1233 38 1 1.8117 -11.7056 -4.4079 39 1 -0.1622 -11.0486 -5.6985 40 1 -3.5031 -7.8748 -3.7584 41 1 -1.9130 -7.8822 -1.6733 42 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323318553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:59 Heat of formation + Delta-G solvation = 93.755247 kcal Electronic energy + Delta-G solvation = -25319.064614 eV Core-core repulsion = 21652.211473 eV Total energy + Delta-G solvation = -3666.853141 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.88768 -39.16082 -38.07971 -37.00172 -35.64984 -33.70786 -32.30830 -31.37371 -30.13001 -29.19134 -28.76655 -26.56721 -25.36820 -24.07118 -22.93644 -22.79502 -21.69762 -20.98151 -20.65189 -18.14842 -17.70626 -17.06907 -16.74535 -16.12907 -16.05744 -15.56926 -15.04695 -14.90954 -14.81429 -14.37751 -14.31870 -14.00609 -13.71934 -13.56186 -13.38396 -13.05336 -12.66203 -12.56863 -12.32363 -12.00690 -11.86094 -11.67989 -11.58763 -11.29988 -11.12898 -10.87050 -10.79535 -10.62116 -10.44180 -10.19575 -9.36548 -8.96596 -8.87021 -8.66700 -8.14771 -7.91212 -7.27801 -6.46263 -4.05422 0.52571 1.16121 2.04485 2.31899 2.47186 2.80495 3.11226 3.12655 3.18298 3.37929 3.89729 3.95176 4.13978 4.25453 4.52737 4.53875 4.65191 4.76378 4.96575 5.01057 5.08002 5.14749 5.25042 5.31472 5.38408 5.45476 5.48926 5.60050 5.67777 5.75523 5.84788 5.86029 5.94111 6.12797 6.30984 6.33350 6.56099 6.58130 6.74580 6.86723 6.95908 7.03926 7.11373 7.27281 7.31963 7.41089 7.77146 7.79523 7.98465 8.99358 9.69221 10.71762 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015231 B = 0.002605 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.941598 B =10745.432284 C =11887.214163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.392 4.392 8 H 0.092 0.908 9 O -0.177 6.177 10 C 0.152 3.848 11 C -0.231 4.231 12 C -0.076 4.076 13 C -0.207 4.207 14 C -0.051 4.051 15 C 0.109 3.891 16 N -0.677 5.677 17 C 0.095 3.905 18 C 0.102 3.898 19 C -0.145 4.145 20 C -0.102 4.102 21 C -0.081 4.081 22 C 0.215 3.785 23 N -0.496 5.496 24 C 0.026 3.974 25 C -0.076 4.076 26 N -0.349 5.349 27 C -0.165 4.165 28 H 0.270 0.730 29 H 0.126 0.874 30 H 0.107 0.893 31 H 0.101 0.899 32 H 0.038 0.962 33 H 0.079 0.921 34 H 0.348 0.652 35 H 0.060 0.940 36 H 0.088 0.912 37 H 0.147 0.853 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.181 0.819 41 H 0.183 0.817 42 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 -21.112 -2.285 21.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.165 4.165 3 Si 0.766 3.234 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.081 6.081 10 C 0.098 3.902 11 C -0.250 4.250 12 C -0.094 4.094 13 C -0.227 4.227 14 C -0.052 4.052 15 C -0.019 4.019 16 N -0.309 5.309 17 C -0.034 4.034 18 C -0.003 4.003 19 C -0.167 4.167 20 C -0.125 4.125 21 C -0.101 4.101 22 C -0.028 4.028 23 N -0.216 5.216 24 C -0.125 4.125 25 C -0.208 4.208 26 N -0.021 5.021 27 C -0.185 4.185 28 H 0.079 0.921 29 H 0.144 0.856 30 H 0.125 0.875 31 H 0.119 0.881 32 H 0.056 0.944 33 H 0.098 0.902 34 H 0.167 0.833 35 H 0.078 0.922 36 H 0.106 0.894 37 H 0.164 0.836 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.198 0.802 41 H 0.200 0.800 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.625 -20.650 -3.101 20.944 hybrid contribution 1.615 0.639 1.086 2.048 sum 3.239 -20.011 -2.015 20.371 Atomic orbital electron populations 1.70050 1.05945 1.27571 1.46061 1.25291 0.95846 0.98823 0.96554 0.85650 0.79117 0.80400 0.78279 1.19127 1.20118 1.20123 1.21365 0.91792 0.80812 1.52846 0.89066 1.83981 1.34285 1.11410 1.78400 1.19354 0.90241 0.88103 0.92479 1.21206 0.93890 0.99034 1.10878 1.20690 0.98383 0.92353 0.97963 1.20402 0.93446 0.96880 1.11949 1.19069 0.92995 0.92887 1.00234 1.20810 0.99689 0.92722 0.88685 1.60498 1.30412 1.22173 1.17847 1.20972 1.01280 0.91057 0.90109 1.20152 0.87331 0.97873 0.94938 1.20622 0.99575 0.99412 0.97051 1.20979 0.97489 1.00132 0.93949 1.20245 0.92473 0.96446 1.00980 1.21003 0.96725 1.01439 0.83611 1.70739 1.07236 1.13991 1.29608 1.22524 1.00806 0.99477 0.89679 1.22737 0.90693 1.02910 1.04430 1.42693 1.15644 1.30023 1.13732 1.20006 0.99351 0.89710 1.09448 0.92051 0.85612 0.87530 0.88062 0.94401 0.90239 0.83323 0.92193 0.89351 0.83556 0.84084 0.83382 0.80217 0.79986 0.86546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.27 13.67 55.48 0.76 -24.51 16 2 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 3 Si 0.94 20.51 29.55 -169.99 -5.02 15.49 16 4 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 5 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 7 C -0.39 -10.94 9.49 30.89 0.29 -10.65 16 8 H 0.09 2.36 5.21 -52.49 -0.27 2.09 16 9 O -0.18 -5.06 9.76 0.05 0.00 -5.06 16 10 C 0.15 3.64 6.65 -39.11 -0.26 3.38 16 11 C -0.23 -4.97 9.17 -39.39 -0.36 -5.33 16 12 C -0.08 -1.35 10.04 -39.61 -0.40 -1.75 16 13 C -0.21 -3.37 9.70 -39.53 -0.38 -3.76 16 14 C -0.05 -0.86 5.39 -104.65 -0.56 -1.42 16 15 C 0.11 1.35 5.81 -4.98 -0.03 1.33 16 16 N -0.68 -7.87 6.48 -116.35 -0.75 -8.63 16 17 C 0.10 0.86 5.61 -4.98 -0.03 0.83 16 18 C 0.10 1.03 6.30 -81.69 -0.51 0.52 16 19 C -0.14 -1.17 9.58 -39.91 -0.38 -1.55 16 20 C -0.10 -0.79 10.07 -39.54 -0.40 -1.19 16 21 C -0.08 -0.82 10.11 -39.36 -0.40 -1.21 16 22 C 0.22 2.88 7.81 -156.04 -1.22 1.66 16 23 N -0.50 -7.34 11.32 -12.78 -0.14 -7.49 16 24 C 0.03 0.34 11.83 -17.94 -0.21 0.12 16 25 C -0.08 -0.95 11.12 -16.43 -0.18 -1.13 16 26 N -0.35 -4.35 2.95 -58.45 -0.17 -4.52 16 27 C -0.17 -3.43 9.65 -39.40 -0.38 -3.81 16 28 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 30 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.10 1.35 8.06 -52.49 -0.42 0.93 16 32 H 0.04 0.40 8.08 -51.93 -0.42 -0.02 16 33 H 0.08 0.97 8.08 -51.93 -0.42 0.55 16 34 H 0.35 3.99 8.72 -39.29 -0.34 3.65 16 35 H 0.06 0.41 8.01 -51.93 -0.42 -0.01 16 36 H 0.09 0.79 7.73 -51.93 -0.40 0.39 16 37 H 0.15 0.77 8.03 -52.49 -0.42 0.35 16 38 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 39 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 40 H 0.18 1.81 8.06 -52.48 -0.42 1.38 16 41 H 0.18 1.95 7.94 -52.49 -0.42 1.53 16 42 H 0.12 2.40 8.06 -52.48 -0.42 1.97 16 LS Contribution 362.92 15.07 5.47 5.47 Total: -1.00 -33.58 362.92 -10.46 -44.04 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: -5.08 Total: 8.19 kcal Atomic # 6 Polarization: -17.47 SS G_CDS: -5.51 Total: -22.98 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -0.31 Total: -45.15 kcal Atomic # 8 Polarization: -5.06 SS G_CDS: 0.00 Total: -5.06 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.58 -10.46 -44.04 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323318553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.793 kcal (2) G-P(sol) polarization free energy of solvation -33.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds