Wall clock time and date at job start Tue Mar 31 2020 14:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31561 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48495 * 109.47182 * 180.02562 * 3 2 1 5 5 H 1.48494 * 109.47069 * 300.00245 * 3 2 1 6 6 H 1.48505 * 109.47042 * 60.00062 * 3 2 1 7 7 C 1.38658 * 119.99768 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99827 * 179.97438 * 7 2 1 9 9 O 1.34828 * 119.99961 * 0.02562 * 7 2 1 10 10 C 1.35751 * 117.00270 * 185.03453 * 9 7 2 11 11 C 1.38907 * 120.06573 * 354.17581 * 10 9 7 12 12 C 1.38080 * 119.93037 * 179.72269 * 11 10 9 13 13 C 1.38324 * 120.06728 * 0.56797 * 12 11 10 14 14 C 1.38283 * 120.13947 * 359.68120 * 13 12 11 15 15 C 1.50702 * 119.96579 * 180.02562 * 14 13 12 16 16 N 1.46892 * 109.47065 * 270.02155 * 15 14 13 17 17 C 1.46895 * 111.00142 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.47549 * 180.02562 * 17 16 15 19 19 C 1.34948 * 119.69446 * 95.00207 * 18 17 16 20 20 C 1.40478 * 120.29810 * 180.02562 * 19 18 17 21 21 C 1.36015 * 119.69614 * 359.97438 * 20 19 18 22 22 C 1.40939 * 119.32625 * 0.02562 * 21 20 19 23 23 N 1.32560 * 132.32784 * 180.02562 * 22 21 20 24 24 C 1.33514 * 109.15727 * 179.97438 * 23 22 21 25 25 C 1.35104 * 108.62967 * 359.97438 * 24 23 22 26 26 N 1.36484 * 119.69518 * 274.73001 * 18 17 16 27 27 C 1.38123 * 120.06577 * 0.04594 * 14 13 12 28 28 H 0.97000 * 119.99462 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.03226 * 359.97438 * 11 10 9 30 30 H 1.07993 * 119.96486 * 180.27241 * 12 11 10 31 31 H 1.08001 * 119.93050 * 179.70445 * 13 12 11 32 32 H 1.08997 * 109.47004 * 30.02720 * 15 14 13 33 33 H 1.08999 * 109.46889 * 150.02243 * 15 14 13 34 34 H 1.00902 * 111.00348 * 56.04494 * 16 15 14 35 35 H 1.09005 * 109.47317 * 300.00577 * 17 16 15 36 36 H 1.09000 * 109.47422 * 59.99787 * 17 16 15 37 37 H 1.08002 * 119.85118 * 0.02562 * 19 18 17 38 38 H 1.08000 * 120.15090 * 179.97438 * 20 19 18 39 39 H 1.07995 * 120.34028 * 180.02562 * 21 20 19 40 40 H 1.08004 * 125.68493 * 179.97438 * 24 23 22 41 41 H 1.07999 * 126.41582 * 179.97438 * 25 24 23 42 42 H 1.08006 * 120.03219 * 180.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.7096 1.3463 -0.0006 5 1 1.8909 2.3964 -1.2124 6 1 1.8910 2.3964 1.2126 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2009 -0.0010 9 8 1.3347 -2.3685 -0.0016 10 6 2.0698 -3.5048 0.1041 11 6 3.4573 -3.4403 0.0852 12 6 4.2023 -4.5972 0.1986 13 6 3.5684 -5.8208 0.3192 14 6 2.1873 -5.8888 0.3331 15 6 1.5008 -7.2238 0.4651 16 7 1.2708 -7.7904 -0.8705 17 6 0.6011 -9.0947 -0.7809 18 6 0.3830 -9.6438 -2.1672 19 6 1.2814 -10.5010 -2.6957 20 6 1.0910 -11.0201 -3.9871 21 6 -0.0053 -10.6555 -4.7050 22 6 -0.9343 -9.7594 -4.1391 23 7 -2.0660 -9.2410 -4.5949 24 6 -2.5842 -8.4347 -3.6654 25 6 -1.7676 -8.4360 -2.5891 26 7 -0.7241 -9.2740 -2.8745 27 6 1.4365 -4.7345 0.2256 28 1 -0.4849 0.8401 -0.0004 29 1 3.9527 -2.4857 -0.0140 30 1 5.2811 -4.5473 0.1885 31 1 4.1534 -6.7248 0.4030 32 1 2.1300 -7.9003 1.0435 33 1 0.5456 -7.0924 0.9735 34 1 2.1349 -7.8619 -1.3866 35 1 1.2237 -9.7845 -0.2110 36 1 -0.3604 -8.9760 -0.2813 37 1 2.1507 -10.7891 -2.1233 38 1 1.8117 -11.7056 -4.4079 39 1 -0.1622 -11.0486 -5.6985 40 1 -3.5031 -7.8748 -3.7584 41 1 -1.9130 -7.8822 -1.6733 42 1 0.3579 -4.7882 0.2370 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323318553.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:58 Heat of formation + Delta-G solvation = 72.384659 kcal Electronic energy + Delta-G solvation = -25319.991312 eV Core-core repulsion = 21652.211473 eV Total energy + Delta-G solvation = -3667.779840 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.73357 -40.79923 -39.02250 -38.38634 -36.70212 -34.61461 -34.26740 -32.52445 -31.21324 -30.61752 -29.75433 -27.68382 -27.14765 -25.15761 -23.77177 -23.58182 -23.23574 -22.27267 -21.78963 -19.57240 -18.92964 -18.71175 -17.58402 -16.99896 -16.93020 -16.67755 -16.50126 -16.22111 -16.01121 -15.78739 -15.41946 -15.31831 -14.91657 -14.80317 -14.51852 -14.30014 -13.97549 -13.63907 -13.53665 -13.21410 -13.02083 -12.92099 -12.71772 -12.48385 -12.33929 -12.24754 -12.14582 -12.08711 -11.92217 -11.18913 -11.14177 -10.82312 -9.82439 -9.68400 -9.43514 -8.98050 -8.75191 -8.47659 -6.16162 -0.20468 0.37584 0.53298 0.75493 1.33631 1.42226 1.52100 1.67751 1.91972 2.16704 2.55087 2.79581 3.08146 3.24342 3.39517 3.48135 3.55524 3.78024 3.89730 4.01152 4.12931 4.17020 4.32367 4.37401 4.41111 4.46076 4.52155 4.59840 4.65006 4.68653 4.70783 4.76858 4.96889 5.09777 5.12742 5.14584 5.26197 5.31223 5.61165 5.67296 5.68085 5.73996 5.76138 5.88770 6.02948 6.15422 6.25572 6.34908 6.88493 6.97190 7.79477 8.76021 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015231 B = 0.002605 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1837.941598 B =10745.432284 C =11887.214163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.025 4.025 3 Si 1.019 2.981 4 H -0.251 1.251 5 H -0.269 1.269 6 H -0.267 1.267 7 C -0.412 4.412 8 H 0.101 0.899 9 O -0.236 6.236 10 C 0.109 3.891 11 C -0.246 4.246 12 C -0.073 4.073 13 C -0.179 4.179 14 C -0.039 4.039 15 C 0.116 3.884 16 N -0.696 5.696 17 C 0.103 3.897 18 C 0.075 3.925 19 C -0.131 4.131 20 C -0.081 4.081 21 C -0.108 4.108 22 C 0.196 3.804 23 N -0.540 5.540 24 C 0.007 3.993 25 C -0.093 4.093 26 N -0.354 5.354 27 C -0.184 4.184 28 H 0.272 0.728 29 H 0.115 0.885 30 H 0.145 0.855 31 H 0.153 0.847 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.351 0.649 35 H 0.097 0.903 36 H 0.082 0.918 37 H 0.187 0.813 38 H 0.182 0.818 39 H 0.161 0.839 40 H 0.194 0.806 41 H 0.191 0.809 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.187 -24.491 -1.572 25.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.222 4.222 3 Si 0.838 3.162 4 H -0.174 1.174 5 H -0.194 1.194 6 H -0.192 1.192 7 C -0.488 4.488 8 H 0.118 0.882 9 O -0.143 6.143 10 C 0.059 3.941 11 C -0.266 4.266 12 C -0.091 4.091 13 C -0.198 4.198 14 C -0.040 4.040 15 C -0.012 4.012 16 N -0.329 5.329 17 C -0.026 4.026 18 C -0.029 4.029 19 C -0.152 4.152 20 C -0.104 4.104 21 C -0.128 4.128 22 C -0.048 4.048 23 N -0.261 5.261 24 C -0.143 4.143 25 C -0.225 4.225 26 N -0.025 5.025 27 C -0.204 4.204 28 H 0.081 0.919 29 H 0.132 0.868 30 H 0.163 0.837 31 H 0.171 0.829 32 H 0.093 0.907 33 H 0.094 0.906 34 H 0.171 0.829 35 H 0.114 0.886 36 H 0.101 0.899 37 H 0.204 0.796 38 H 0.199 0.801 39 H 0.178 0.822 40 H 0.211 0.789 41 H 0.208 0.792 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.798 -24.091 -2.374 24.893 hybrid contribution 0.515 1.238 0.871 1.599 sum 6.313 -22.854 -1.504 23.757 Atomic orbital electron populations 1.70200 1.08047 1.28670 1.49109 1.26601 0.96860 1.02767 0.95960 0.84527 0.78249 0.74843 0.78568 1.17410 1.19444 1.19236 1.21844 0.92446 0.81487 1.53050 0.88194 1.83942 1.36029 1.12640 1.81694 1.19954 0.91696 0.87956 0.94486 1.21320 0.93089 1.00371 1.11785 1.21153 1.00220 0.91482 0.96270 1.21027 0.93314 0.98077 1.07404 1.19579 0.93613 0.93520 0.97286 1.20757 0.99902 0.90805 0.89732 1.60336 1.30858 1.24304 1.17372 1.20987 1.01410 0.90359 0.89844 1.20656 0.87341 0.99228 0.95692 1.21211 0.99585 0.97305 0.97103 1.21510 0.96629 0.98911 0.93392 1.20610 0.93088 0.96903 1.02210 1.21588 0.96958 1.01954 0.84256 1.70675 1.08844 1.15672 1.30926 1.22876 1.01698 0.99806 0.89937 1.22890 0.91222 1.03682 1.04667 1.42838 1.16198 1.29774 1.13731 1.20236 0.99257 0.90364 1.10530 0.91895 0.86765 0.83708 0.82908 0.90673 0.90570 0.82944 0.88565 0.89936 0.79615 0.80074 0.82171 0.78902 0.79204 0.88027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.61 13.67 21.61 0.30 -57.32 16 2 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 3 Si 1.02 43.51 29.55 68.60 2.03 45.53 16 4 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 5 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 6 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.41 -24.42 9.49 67.92 0.64 -23.78 16 8 H 0.10 5.45 5.21 -2.91 -0.02 5.43 16 9 O -0.24 -14.52 9.76 -22.74 -0.22 -14.74 16 10 C 0.11 5.48 6.65 22.58 0.15 5.63 16 11 C -0.25 -10.66 9.17 22.39 0.21 -10.46 16 12 C -0.07 -2.37 10.04 22.25 0.22 -2.15 16 13 C -0.18 -4.93 9.70 22.30 0.22 -4.71 16 14 C -0.04 -1.21 5.39 -19.88 -0.11 -1.32 16 15 C 0.12 2.43 5.81 85.56 0.50 2.93 16 16 N -0.70 -13.76 6.48 -522.01 -3.38 -17.14 16 17 C 0.10 1.47 5.61 85.56 0.48 1.95 16 18 C 0.07 1.31 6.30 41.08 0.26 1.56 16 19 C -0.13 -1.48 9.58 22.06 0.21 -1.27 16 20 C -0.08 -0.92 10.07 22.30 0.22 -0.70 16 21 C -0.11 -2.00 10.11 22.41 0.23 -1.77 16 22 C 0.20 5.25 7.81 134.11 1.05 6.30 16 23 N -0.54 -16.83 11.32 -194.34 -2.20 -19.03 16 24 C 0.01 0.19 11.83 83.72 0.99 1.18 16 25 C -0.09 -2.42 11.12 83.19 0.93 -1.49 16 26 N -0.35 -8.64 2.95 -338.85 -1.00 -9.64 16 27 C -0.18 -7.82 9.65 22.39 0.22 -7.60 16 28 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 29 H 0.11 5.10 5.64 -2.91 -0.02 5.08 16 30 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 31 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 32 H 0.08 1.08 8.08 -2.39 -0.02 1.06 16 33 H 0.08 1.68 8.08 -2.39 -0.02 1.67 16 34 H 0.35 6.44 8.72 -89.69 -0.78 5.66 16 35 H 0.10 0.72 8.01 -2.38 -0.02 0.70 16 36 H 0.08 1.29 7.73 -2.39 -0.02 1.27 16 37 H 0.19 0.62 8.03 -2.91 -0.02 0.60 16 38 H 0.18 0.60 8.06 -2.91 -0.02 0.58 16 39 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 40 H 0.19 4.32 8.06 -2.91 -0.02 4.30 16 41 H 0.19 4.32 7.94 -2.91 -0.02 4.30 16 42 H 0.10 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -82.81 362.92 2.67 -80.14 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.27 Total: 28.87 kcal Atomic # 6 Polarization: -43.54 SS G_CDS: 6.87 Total: -36.67 kcal Atomic # 7 Polarization: -96.85 SS G_CDS: -6.28 Total: -103.13 kcal Atomic # 8 Polarization: -14.52 SS G_CDS: -0.22 Total: -14.74 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Total: -82.81 2.67 -80.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323318553.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.521 kcal (2) G-P(sol) polarization free energy of solvation -82.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds