Wall clock time and date at job start Tue Mar 31 2020 15:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35238 * 126.06985 * 2 1 4 4 C 1.40412 * 107.86207 * 180.14538 * 3 2 1 5 5 N 1.40160 * 125.96835 * 179.86881 * 4 3 2 6 6 C 1.34777 * 119.99865 * 359.70517 * 5 4 3 7 7 O 1.21293 * 120.00456 * 0.02562 * 6 5 4 8 8 C 1.50700 * 119.99675 * 179.72968 * 6 5 4 9 9 C 1.47202 * 109.47230 * 180.27949 * 8 6 5 10 10 C 7.20432 * 120.04093 * 359.86995 * 2 1 3 11 11 C 8.25733 * 112.82733 * 359.88301 * 2 1 3 12 12 C 1.39536 * 120.14333 * 232.42388 * 11 10 9 13 13 C 1.37969 * 119.85960 * 179.79316 * 12 11 10 14 14 C 1.38346 * 120.14068 * 0.47021 * 13 12 11 15 15 C 1.38338 * 120.28596 * 359.78101 * 14 13 12 16 16 C 1.37972 * 120.14312 * 359.97438 * 15 14 13 17 17 N 1.31216 * 108.05585 * 359.59522 * 4 3 2 18 18 N 1.34970 * 126.06690 * 179.70336 * 2 1 3 19 19 C 1.46502 * 125.97561 * 359.97438 * 18 2 1 20 20 C 1.50696 * 109.47199 * 269.97761 * 19 18 2 21 21 H 1.08002 * 120.00087 * 359.97438 * 20 19 18 22 22 C 1.37876 * 120.00232 * 180.02562 * 20 19 18 23 23 N 1.31509 * 120.00472 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99847 * 359.97438 * 22 20 19 25 25 H 1.48507 * 109.47152 * 89.99903 * 24 22 20 26 26 H 1.48495 * 109.47267 * 209.99750 * 24 22 20 27 27 H 1.48504 * 109.47143 * 330.00388 * 24 22 20 28 28 H 1.09000 * 109.47338 * 270.29579 * 1 2 3 29 29 H 1.09003 * 109.46602 * 30.29750 * 1 2 3 30 30 H 1.08996 * 109.47531 * 150.29566 * 1 2 3 31 31 H 1.08001 * 126.06771 * 0.02562 * 3 2 1 32 32 H 0.97001 * 119.99650 * 179.71644 * 5 4 3 33 33 H 1.09009 * 109.47352 * 300.27556 * 8 6 5 34 34 H 1.08998 * 109.47585 * 60.27844 * 8 6 5 35 35 H 1.08003 * 120.06785 * 0.02717 * 12 11 10 36 36 H 1.08003 * 119.93233 * 180.25219 * 13 12 11 37 37 H 1.08003 * 119.85587 * 179.76719 * 14 13 12 38 38 H 1.08002 * 119.93230 * 179.97438 * 15 14 13 39 39 H 1.08000 * 120.07178 * 179.97438 * 16 15 14 40 40 H 1.09002 * 109.47211 * 29.97836 * 19 18 2 41 41 H 1.09001 * 109.47251 * 149.97586 * 19 18 2 42 42 H 0.96998 * 120.00219 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3033 1.0931 0.0000 4 6 3.6371 0.6544 -0.0034 5 7 4.7735 1.4747 -0.0071 6 6 4.6367 2.8155 -0.0136 7 8 3.5302 3.3123 -0.0158 8 6 5.8587 3.6976 -0.0115 9 6 5.4442 5.1101 -0.0129 10 6 5.1137 6.2365 -0.0142 11 6 4.7105 7.6106 -0.0155 12 6 3.8069 8.0767 0.9401 13 6 3.4258 9.4027 0.9360 14 6 3.9300 10.2674 -0.0189 15 6 4.8222 9.8105 -0.9723 16 6 5.2152 8.4880 -0.9760 17 7 3.6337 -0.6577 0.0035 18 7 2.3017 -1.0910 0.0056 19 6 1.8500 -2.4846 0.0134 20 6 1.6961 -2.9549 1.4368 21 1 1.9135 -2.2831 2.2540 22 6 1.2789 -4.2432 1.6959 23 7 1.1451 -4.6539 2.9381 24 14 0.9036 -5.4055 0.2825 25 1 2.1362 -6.1447 -0.0911 26 1 -0.1448 -6.3706 0.7003 27 1 0.4213 -4.6252 -0.8853 28 1 -0.3634 0.0053 1.0276 29 1 -0.3632 0.8874 -0.5185 30 1 -0.3634 -0.8926 -0.5092 31 1 1.9720 2.1211 0.0004 32 1 5.6584 1.0774 -0.0051 33 1 6.4522 3.4940 0.8799 34 1 6.4559 3.4933 -0.9001 35 1 3.4096 7.4017 1.6838 36 1 2.7296 9.7656 1.6777 37 1 3.6256 11.3037 -0.0202 38 1 5.2119 10.4905 -1.7154 39 1 5.9115 8.1324 -1.7212 40 1 0.8909 -2.5586 -0.4994 41 1 2.5842 -3.1074 -0.4977 42 1 0.8519 -5.5603 3.1204 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001336911942.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:13 Heat of formation + Delta-G solvation = 96.628113 kcal Electronic energy + Delta-G solvation = -24342.478904 eV Core-core repulsion = 20675.750339 eV Total energy + Delta-G solvation = -3666.728565 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.36154 -40.71863 -40.02557 -36.44062 -35.36546 -35.25274 -33.40694 -32.83385 -32.42734 -31.89180 -29.77105 -28.67187 -27.92637 -24.80881 -23.96935 -23.43632 -22.90405 -21.29902 -20.88379 -19.24424 -19.14121 -18.02766 -17.79184 -17.29391 -16.90204 -16.87325 -16.30757 -15.96412 -15.76549 -15.61620 -15.14200 -14.91997 -14.58912 -14.46902 -14.36264 -14.27908 -13.93205 -13.90039 -13.75271 -13.58647 -13.23293 -12.89856 -12.57713 -12.34114 -12.27517 -12.20982 -11.91295 -11.83422 -11.60520 -11.45684 -11.15455 -10.91053 -10.87907 -9.92576 -9.63382 -9.43040 -9.14304 -8.40913 -6.52271 -0.06774 0.43854 0.84632 1.15498 1.35109 1.36981 1.37309 1.46931 1.61681 1.89847 2.15721 2.26168 2.40144 2.91558 3.00691 3.03952 3.60944 3.87106 4.03124 4.05691 4.08504 4.21691 4.30337 4.38364 4.46426 4.48269 4.50332 4.55677 4.64680 4.74587 4.76477 4.82657 4.95163 5.06784 5.08195 5.09652 5.20233 5.22752 5.47320 5.53292 5.55243 5.84520 5.97497 6.01191 6.21677 6.34691 6.50477 6.51520 6.91096 7.08959 7.11650 8.75707 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.028353 B = 0.001905 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.301962 B =14691.090447 C =15095.880827 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.089 3.911 3 C -0.302 4.302 4 C 0.275 3.725 5 N -0.619 5.619 6 C 0.520 3.480 7 O -0.550 6.550 8 C -0.005 4.005 9 C -0.153 4.153 10 C -0.153 4.153 11 C -0.012 4.012 12 C -0.115 4.115 13 C -0.123 4.123 14 C -0.112 4.112 15 C -0.120 4.120 16 C -0.107 4.107 17 N -0.352 5.352 18 N -0.342 5.342 19 C 0.241 3.759 20 C -0.551 4.551 21 H 0.023 0.977 22 C 0.021 3.979 23 N -0.937 5.937 24 Si 0.952 3.048 25 H -0.265 1.265 26 H -0.275 1.275 27 H -0.234 1.234 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.079 0.921 31 H 0.163 0.837 32 H 0.431 0.569 33 H 0.161 0.839 34 H 0.165 0.835 35 H 0.119 0.881 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.135 0.865 40 H 0.074 0.926 41 H 0.050 0.950 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.580 25.939 -10.344 29.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.041 4.041 3 C -0.333 4.333 4 C 0.021 3.979 5 N -0.270 5.270 6 C 0.308 3.692 7 O -0.425 6.425 8 C -0.043 4.043 9 C -0.154 4.154 10 C -0.153 4.153 11 C -0.012 4.012 12 C -0.133 4.133 13 C -0.141 4.141 14 C -0.129 4.129 15 C -0.138 4.138 16 C -0.125 4.125 17 N -0.182 5.182 18 N -0.124 5.124 19 C 0.121 3.879 20 C -0.589 4.589 21 H 0.041 0.959 22 C -0.178 4.178 23 N -0.575 5.575 24 Si 0.773 3.227 25 H -0.190 1.190 26 H -0.200 1.200 27 H -0.157 1.157 28 H 0.096 0.904 29 H 0.124 0.876 30 H 0.097 0.903 31 H 0.180 0.820 32 H 0.270 0.730 33 H 0.178 0.822 34 H 0.183 0.817 35 H 0.137 0.863 36 H 0.165 0.835 37 H 0.172 0.828 38 H 0.173 0.827 39 H 0.153 0.847 40 H 0.092 0.908 41 H 0.068 0.932 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.449 25.006 -10.226 28.306 hybrid contribution -0.209 -0.618 0.356 0.743 sum 8.240 24.388 -9.870 27.569 Atomic orbital electron populations 1.20506 0.85256 1.04693 1.03807 1.21741 0.96702 0.86455 0.99174 1.21443 0.90350 0.99845 1.21618 1.19324 0.88884 0.89243 1.00498 1.42534 1.07151 1.04841 1.72488 1.21279 0.92128 0.81030 0.74765 1.90676 1.28988 1.74303 1.48517 1.18728 0.93950 0.81642 1.09963 1.21718 1.00329 0.93496 0.99836 1.19653 0.99675 0.93197 1.02780 1.16188 0.99392 0.87284 0.98324 1.21406 0.96842 0.96999 0.98027 1.21408 1.00354 0.92446 0.99903 1.21693 0.96104 1.01133 0.94011 1.21464 0.97713 0.95050 0.99585 1.21454 0.99755 0.93797 0.97466 1.77167 0.99652 1.09907 1.31483 1.48443 1.01917 1.07068 1.55000 1.19799 0.96485 0.74575 0.97039 1.21241 1.47802 0.98731 0.91125 0.95886 1.25839 0.93710 0.99282 0.99017 1.70030 1.46920 1.19179 1.21400 0.85668 0.79067 0.78755 0.79241 1.18976 1.19955 1.15696 0.90412 0.87550 0.90250 0.82013 0.72981 0.82202 0.81728 0.86340 0.83498 0.82795 0.82738 0.84665 0.90844 0.93200 0.91723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.76 10.11 71.24 0.72 -2.04 16 2 C 0.09 3.71 6.92 41.39 0.29 4.00 16 3 C -0.30 -12.38 9.52 22.11 0.21 -12.17 16 4 C 0.27 10.87 8.11 133.33 1.08 11.95 16 5 N -0.62 -17.16 5.45 -307.51 -1.68 -18.83 16 6 C 0.52 13.63 7.78 87.66 0.68 14.31 16 7 O -0.55 -19.68 13.16 -3.07 -0.04 -19.73 16 8 C 0.00 -0.07 6.19 28.04 0.17 0.10 16 9 C -0.15 -3.52 12.58 31.13 0.39 -3.13 16 10 C -0.15 -3.87 13.24 30.01 0.40 -3.48 16 11 C -0.01 -0.27 5.72 -21.41 -0.12 -0.39 16 12 C -0.11 -2.38 9.75 22.52 0.22 -2.16 16 13 C -0.12 -1.86 10.03 22.23 0.22 -1.63 16 14 C -0.11 -1.34 10.04 22.32 0.22 -1.11 16 15 C -0.12 -1.52 10.03 22.23 0.22 -1.30 16 16 C -0.11 -1.85 9.75 22.52 0.22 -1.63 16 17 N -0.35 -15.92 12.59 -54.45 -0.69 -16.61 16 18 N -0.34 -15.92 3.59 -338.44 -1.22 -17.14 16 19 C 0.24 11.45 5.06 85.63 0.43 11.89 16 20 C -0.55 -31.65 9.94 25.60 0.25 -31.39 16 21 H 0.02 1.54 8.06 -2.91 -0.02 1.51 16 22 C 0.02 1.19 5.47 84.66 0.46 1.66 16 23 N -0.94 -57.02 13.96 21.45 0.30 -56.72 16 24 Si 0.95 40.68 27.47 68.60 1.88 42.56 16 25 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 26 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 27 H -0.23 -8.81 6.54 99.48 0.65 -8.16 16 28 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 29 H 0.11 2.76 8.14 -2.39 -0.02 2.75 16 30 H 0.08 2.44 7.07 -2.39 -0.02 2.43 16 31 H 0.16 6.57 5.92 -2.91 -0.02 6.55 16 32 H 0.43 8.42 8.82 -92.71 -0.82 7.60 16 33 H 0.16 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.17 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.12 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.15 1.51 8.06 -2.91 -0.02 1.49 16 37 H 0.15 0.89 8.06 -2.91 -0.02 0.87 16 38 H 0.15 1.01 8.06 -2.91 -0.02 0.99 16 39 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 40 H 0.07 3.12 6.10 -2.39 -0.01 3.11 16 41 H 0.05 2.31 7.57 -2.39 -0.02 2.30 16 42 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -83.50 371.92 4.84 -78.66 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.19 Total: 24.31 kcal Atomic # 6 Polarization: -22.60 SS G_CDS: 6.08 Total: -16.52 kcal Atomic # 7 Polarization: -106.01 SS G_CDS: -3.28 Total: -109.29 kcal Atomic # 8 Polarization: -19.68 SS G_CDS: -0.04 Total: -19.73 kcal Atomic # 14 Polarization: 40.68 SS G_CDS: 1.88 Total: 42.56 kcal Total: -83.50 4.84 -78.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336911942.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 175.290 kcal (2) G-P(sol) polarization free energy of solvation -83.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds