Wall clock time and date at job start Tue Mar 31 2020 14:04:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.72505 * 9 7 2 11 11 C 1.52996 * 109.46929 * 179.97438 * 10 9 7 12 12 H 1.09006 * 109.47486 * 304.99942 * 11 10 9 13 13 N 1.46899 * 109.47415 * 65.00517 * 11 10 9 14 14 C 1.50700 * 109.47032 * 185.00304 * 11 10 9 15 15 O 1.21287 * 120.00103 * 260.00250 * 14 11 10 16 16 N 1.34778 * 120.00347 * 79.99627 * 14 11 10 17 17 C 1.46496 * 119.99982 * 180.02562 * 16 14 11 18 18 H 1.08993 * 109.47419 * 35.00624 * 17 16 14 19 19 C 1.50708 * 109.47371 * 275.00038 * 17 16 14 20 20 N 1.34769 * 119.99975 * 180.02562 * 19 17 16 21 21 O 1.21286 * 119.99685 * 0.02562 * 19 17 16 22 22 C 1.50704 * 109.47243 * 155.00638 * 17 16 14 23 23 C 1.38251 * 119.97066 * 39.71841 * 22 17 16 24 24 C 1.38201 * 120.01889 * 179.77170 * 23 22 17 25 25 C 1.38461 * 119.97731 * 0.51125 * 24 23 22 26 26 F 1.35101 * 120.02548 * 179.76529 * 25 24 23 27 27 C 1.38463 * 119.94753 * 359.74355 * 25 24 23 28 28 C 1.38194 * 119.97347 * 0.02562 * 27 25 24 29 29 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 30 30 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 31 31 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 32 32 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 33 33 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 34 34 H 1.00897 * 111.00222 * 59.99157 * 13 11 10 35 35 H 1.00891 * 111.00353 * 183.95337 * 13 11 10 36 36 H 0.97006 * 119.99721 * 0.02562 * 16 14 11 37 37 H 0.97004 * 120.00428 * 0.02562 * 20 19 17 38 38 H 0.97008 * 119.99919 * 179.97438 * 20 19 17 39 39 H 1.07994 * 119.98818 * 0.02839 * 23 22 17 40 40 H 1.08001 * 120.00824 * 180.25438 * 24 23 22 41 41 H 1.07997 * 120.01155 * 179.97438 * 27 25 24 42 42 H 1.08002 * 119.98730 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 6 2.2451 -3.6621 -0.0081 11 6 1.4801 -4.9871 -0.0075 12 1 0.7920 -5.0090 0.8377 13 7 0.7223 -5.1156 -1.2593 14 6 2.4552 -6.1301 0.1090 15 8 2.7823 -6.7514 -0.8799 16 7 2.9640 -6.4620 1.3121 17 6 3.9124 -7.5728 1.4252 18 1 4.5431 -7.6040 0.5368 19 6 3.1547 -8.8697 1.5492 20 7 3.8249 -10.0330 1.6667 21 8 1.9419 -8.8663 1.5431 22 6 4.7737 -7.3757 2.6461 23 6 4.2152 -6.8918 3.8145 24 6 5.0032 -6.7152 4.9360 25 6 6.3545 -7.0130 4.8861 26 9 7.1266 -6.8362 5.9805 27 6 6.9137 -7.4926 3.7137 28 6 6.1229 -7.6730 2.5949 29 1 -0.4851 0.8401 0.0004 30 1 0.6283 -2.5592 0.8921 31 1 0.6202 -2.5546 -0.8878 32 1 2.8677 -3.6020 -0.9008 33 1 2.8758 -3.6067 0.8792 34 1 1.3382 -5.0980 -2.0583 35 1 0.1579 -5.9519 -1.2562 36 1 2.7022 -5.9653 2.1032 37 1 4.7949 -10.0357 1.6719 38 1 3.3372 -10.8677 1.7469 39 1 3.1621 -6.6557 3.8520 40 1 4.5659 -6.3411 5.8499 41 1 7.9676 -7.7248 3.6735 42 1 6.5587 -8.0474 1.6804 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349092908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:31 Heat of formation + Delta-G solvation = -104.150419 kcal Electronic energy + Delta-G solvation = -26875.874758 eV Core-core repulsion = 22769.670558 eV Total energy + Delta-G solvation = -4106.204200 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.29591 -40.94616 -39.29298 -38.88471 -35.35382 -34.89496 -34.01694 -32.78055 -31.70446 -31.28413 -30.06780 -27.65826 -25.99454 -23.85518 -23.38617 -22.66900 -21.03585 -20.39520 -19.87859 -18.27803 -17.99800 -17.46725 -17.37869 -16.57572 -16.19923 -16.13336 -15.97038 -15.48509 -15.36087 -14.81729 -14.63120 -14.49680 -14.26631 -14.07639 -13.82134 -13.70771 -13.46324 -13.08586 -12.75848 -12.31376 -12.12292 -11.99642 -11.53458 -11.49719 -10.88998 -10.68592 -10.63425 -10.53379 -10.18173 -10.00215 -9.78626 -9.62252 -9.39124 -9.30628 -9.01914 -8.98358 -8.34347 -8.19332 -5.92342 -3.94577 0.53826 0.71889 2.31168 2.62231 2.89401 3.03823 3.35756 3.42038 3.44647 3.53792 3.78632 4.02431 4.20080 4.39720 4.50942 4.62448 4.70913 4.73298 4.85632 5.01741 5.20599 5.37308 5.40246 5.43174 5.57575 5.62357 5.69306 5.83588 5.86027 6.17949 6.34531 6.43969 6.46019 6.65420 6.96418 7.09484 7.32118 7.54393 7.77839 7.83200 7.93759 7.97918 8.14956 8.23903 8.49639 9.13508 9.68518 11.18535 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.003319 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.392352 B = 8433.914940 C =10435.367664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.058 3.942 3 Si 0.888 3.112 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.522 4.522 8 H 0.052 0.948 9 C 0.031 3.969 10 C -0.095 4.095 11 C 0.081 3.919 12 H 0.100 0.900 13 N -0.805 5.805 14 C 0.495 3.505 15 O -0.550 6.550 16 N -0.709 5.709 17 C 0.170 3.830 18 H 0.123 0.877 19 C 0.513 3.487 20 N -0.852 5.852 21 O -0.524 6.524 22 C -0.108 4.108 23 C -0.074 4.074 24 C -0.144 4.144 25 C 0.106 3.894 26 F -0.137 7.137 27 C -0.148 4.148 28 C -0.077 4.077 29 H 0.259 0.741 30 H 0.013 0.987 31 H 0.035 0.965 32 H 0.053 0.947 33 H 0.053 0.947 34 H 0.347 0.653 35 H 0.336 0.664 36 H 0.407 0.593 37 H 0.400 0.600 38 H 0.403 0.597 39 H 0.137 0.863 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.397 -21.239 9.096 26.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.143 4.143 3 Si 0.716 3.284 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.561 4.561 8 H 0.070 0.930 9 C -0.006 4.006 10 C -0.134 4.134 11 C -0.035 4.035 12 H 0.118 0.882 13 N -0.333 5.333 14 C 0.281 3.719 15 O -0.427 6.427 16 N -0.362 5.362 17 C 0.060 3.940 18 H 0.141 0.859 19 C 0.295 3.705 20 N -0.416 5.416 21 O -0.399 6.399 22 C -0.109 4.109 23 C -0.093 4.093 24 C -0.163 4.163 25 C 0.086 3.914 26 F -0.116 7.116 27 C -0.167 4.167 28 C -0.095 4.095 29 H 0.069 0.931 30 H 0.032 0.968 31 H 0.054 0.946 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.161 0.839 35 H 0.148 0.852 36 H 0.244 0.756 37 H 0.228 0.772 38 H 0.234 0.766 39 H 0.155 0.845 40 H 0.160 0.840 41 H 0.158 0.842 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 12.324 -20.630 8.577 25.515 hybrid contribution 1.416 -0.125 0.571 1.532 sum 13.740 -20.755 9.148 26.518 Atomic orbital electron populations 1.69976 1.05941 1.26397 1.50819 1.24987 0.94792 0.99024 0.95504 0.86659 0.79819 0.83820 0.78059 1.20739 1.21300 1.20017 1.21273 0.92874 0.91316 1.50592 0.92999 1.19020 0.93574 0.89775 0.98269 1.21673 0.98858 0.92149 1.00690 1.21843 0.93340 0.92869 0.95412 0.88210 1.58998 1.26703 1.44443 1.03154 1.22857 0.81452 0.85487 0.82074 1.90635 1.60695 1.54508 1.36883 1.45919 1.46255 1.32774 1.11295 1.19537 0.90462 0.86049 0.97927 0.85912 1.20934 0.88390 0.85951 0.75253 1.43770 1.11181 1.08990 1.77707 1.90772 1.13701 1.86971 1.48407 1.19650 0.94194 1.02636 0.94392 1.20889 1.00498 0.96567 0.91308 1.21185 0.92137 1.02536 1.00445 1.17797 0.89155 1.00659 0.83743 1.91527 1.74871 1.92999 1.52175 1.21136 1.01345 1.02346 0.91888 1.20860 0.91979 0.98312 0.98363 0.93104 0.96831 0.94617 0.92785 0.92799 0.83889 0.85231 0.75620 0.77195 0.76635 0.84537 0.84045 0.84155 0.84332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.93 13.29 55.43 0.74 -26.20 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.71 29.54 -169.99 -5.02 16.69 16 4 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.03 0.78 4.86 -27.88 -0.14 0.65 16 10 C -0.10 -1.91 4.78 -26.73 -0.13 -2.03 16 11 C 0.08 1.39 3.15 -68.87 -0.22 1.17 16 12 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 13 N -0.81 -14.02 8.44 -5.65 -0.05 -14.06 16 14 C 0.49 7.88 6.90 -10.98 -0.08 7.81 16 15 O -0.55 -10.01 15.91 5.55 0.09 -9.92 16 16 N -0.71 -8.93 4.56 -56.07 -0.26 -9.19 16 17 C 0.17 1.75 2.58 -70.23 -0.18 1.57 16 18 H 0.12 1.26 7.44 -51.93 -0.39 0.87 16 19 C 0.51 5.76 7.44 -10.99 -0.08 5.68 16 20 N -0.85 -5.78 8.77 31.22 0.27 -5.50 16 21 O -0.52 -8.26 17.16 5.55 0.10 -8.16 16 22 C -0.11 -0.86 4.74 -104.61 -0.50 -1.36 16 23 C -0.07 -0.61 9.05 -39.59 -0.36 -0.96 16 24 C -0.14 -1.14 10.03 -39.51 -0.40 -1.53 16 25 C 0.11 0.87 7.30 -39.42 -0.29 0.58 16 26 F -0.14 -1.27 17.27 2.25 0.04 -1.23 16 27 C -0.15 -0.97 10.03 -39.51 -0.40 -1.37 16 28 C -0.08 -0.47 9.50 -39.60 -0.38 -0.85 16 29 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.04 0.99 7.75 -51.93 -0.40 0.59 16 32 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.35 6.03 8.58 -39.29 -0.34 5.69 16 35 H 0.34 5.29 9.06 -39.30 -0.36 4.93 16 36 H 0.41 4.50 6.85 -40.82 -0.28 4.22 16 37 H 0.40 1.52 8.55 -40.82 -0.35 1.17 16 38 H 0.40 2.36 8.93 -40.82 -0.36 1.99 16 39 H 0.14 1.04 6.90 -52.49 -0.36 0.68 16 40 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.14 0.65 8.06 -52.49 -0.42 0.22 16 42 H 0.14 0.50 8.04 -52.49 -0.42 0.08 16 LS Contribution 368.02 15.07 5.55 5.55 Total: -1.00 -36.36 368.02 -7.42 -43.78 By element: Atomic # 1 Polarization: 17.68 SS G_CDS: -5.34 Total: 12.34 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -3.54 Total: -4.09 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.71 Total: -54.96 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.18 Total: -18.08 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -5.02 Total: 16.69 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.36 -7.42 -43.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349092908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.365 kcal (2) G-P(sol) polarization free energy of solvation -36.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds