Wall clock time and date at job start Tue Mar 31 2020 14:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00255 * 2 1 4 4 H 1.48501 * 109.47402 * 240.00407 * 3 2 1 5 5 H 1.48510 * 109.46871 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47435 * 120.00134 * 3 2 1 7 7 C 1.37879 * 120.00136 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00008 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99939 * 359.97438 * 7 2 1 10 10 C 1.52996 * 109.47313 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.47359 * 179.97438 * 10 9 7 12 12 H 1.08996 * 109.46945 * 55.00109 * 11 10 9 13 13 N 1.46894 * 109.47009 * 295.00275 * 11 10 9 14 14 C 1.50699 * 109.46962 * 175.00189 * 11 10 9 15 15 O 1.21279 * 120.00091 * 100.00697 * 14 11 10 16 16 N 1.34768 * 119.99874 * 279.99774 * 14 11 10 17 17 C 1.46504 * 120.00164 * 180.02562 * 16 14 11 18 18 H 1.08997 * 109.47196 * 34.99840 * 17 16 14 19 19 C 1.50703 * 109.46865 * 275.00276 * 17 16 14 20 20 N 1.34778 * 120.00034 * 179.97438 * 19 17 16 21 21 O 1.21280 * 120.00145 * 359.97438 * 19 17 16 22 22 C 1.50698 * 109.47513 * 155.00206 * 17 16 14 23 23 C 1.38244 * 119.97167 * 219.99790 * 22 17 16 24 24 C 1.38205 * 120.02298 * 180.02562 * 23 22 17 25 25 C 1.38459 * 119.97412 * 0.24026 * 24 23 22 26 26 F 1.35099 * 120.02759 * 179.72396 * 25 24 23 27 27 C 1.38466 * 119.94836 * 359.48301 * 25 24 23 28 28 C 1.38196 * 119.97140 * 0.53984 * 27 25 24 29 29 H 0.96996 * 119.99968 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.46880 * 59.99780 * 9 7 2 31 31 H 1.08997 * 109.47228 * 300.00190 * 9 7 2 32 32 H 1.09000 * 109.47155 * 60.00160 * 10 9 7 33 33 H 1.08997 * 109.47301 * 300.00357 * 10 9 7 34 34 H 1.00906 * 111.00173 * 176.04487 * 13 11 10 35 35 H 1.00906 * 111.00399 * 299.99770 * 13 11 10 36 36 H 0.97001 * 120.00426 * 0.02562 * 16 14 11 37 37 H 0.96996 * 119.99748 * 0.02562 * 20 19 17 38 38 H 0.96999 * 119.99965 * 179.97438 * 20 19 17 39 39 H 1.07999 * 119.98898 * 0.02589 * 23 22 17 40 40 H 1.08002 * 120.00949 * 179.97438 * 24 23 22 41 41 H 1.07997 * 120.00962 * 180.25357 * 27 25 24 42 42 H 1.08000 * 119.98525 * 179.74601 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 1 0.7873 -5.0069 -0.8422 13 7 0.7299 -5.1187 1.2548 14 6 2.4548 -6.1298 -0.1262 15 8 2.7876 -6.7536 0.8592 16 7 2.9563 -6.4587 -1.3331 17 6 3.9033 -7.5699 -1.4548 18 1 3.6421 -8.3498 -0.7397 19 6 5.2980 -7.0746 -1.1709 20 7 6.3400 -7.9278 -1.2240 21 8 5.4828 -5.9083 -0.8945 22 6 3.8439 -8.1297 -2.8527 23 6 3.9093 -9.4961 -3.0528 24 6 3.8555 -10.0106 -4.3343 25 6 3.7411 -9.1568 -5.4183 26 9 3.6940 -9.6584 -6.6719 27 6 3.6700 -7.7888 -5.2163 28 6 3.7244 -7.2766 -3.9339 29 1 -0.4850 0.8400 0.0004 30 1 0.6241 -2.5567 -0.8903 31 1 0.6248 -2.5571 0.8896 32 1 2.8726 -3.6048 0.8877 33 1 2.8713 -3.6039 -0.8922 34 1 0.1655 -5.9551 1.2529 35 1 1.3506 -5.1031 2.0502 36 1 2.6903 -5.9597 -2.1213 37 1 6.1922 -8.8606 -1.4454 38 1 7.2377 -7.6090 -1.0416 39 1 4.0024 -10.1616 -2.2073 40 1 3.9070 -11.0781 -4.4904 41 1 3.5766 -7.1222 -6.0609 42 1 3.6731 -6.2094 -3.7764 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349092916.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:37 Heat of formation + Delta-G solvation = -102.918801 kcal Electronic energy + Delta-G solvation = -26897.766073 eV Core-core repulsion = 22791.615280 eV Total energy + Delta-G solvation = -4106.150793 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.34008 -40.93124 -39.30928 -38.83525 -35.34093 -34.88419 -33.94163 -32.75132 -31.73538 -31.30372 -30.03860 -27.65460 -25.97268 -23.86660 -23.37778 -22.67099 -20.99187 -20.38039 -19.84008 -18.29680 -17.96025 -17.44555 -17.38438 -16.56469 -16.18530 -16.12464 -16.00824 -15.45326 -15.36822 -14.80262 -14.58264 -14.39618 -14.22960 -14.10939 -13.96777 -13.71845 -13.36438 -13.09893 -12.77806 -12.26833 -12.12625 -11.96387 -11.53582 -11.50252 -10.82615 -10.64276 -10.56473 -10.51819 -10.16615 -9.91100 -9.73246 -9.66234 -9.34006 -9.31118 -9.02703 -8.94946 -8.33258 -8.17237 -5.88584 -3.90055 0.50103 0.67872 2.39787 2.60569 2.89520 3.06081 3.40732 3.44376 3.47928 3.55158 3.74514 4.01662 4.16998 4.36507 4.55174 4.66021 4.68347 4.71307 4.85215 4.99148 5.19389 5.34232 5.37106 5.46860 5.55349 5.58305 5.66604 5.83228 5.88397 6.18224 6.30851 6.53994 6.54446 6.76567 7.03911 7.16172 7.32119 7.53272 7.80530 7.83009 8.01933 8.03446 8.18600 8.23944 8.55248 9.17864 9.72753 11.22375 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013933 B = 0.002874 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.147231 B = 9741.649212 C =10284.258260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.889 3.111 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.521 4.521 8 H 0.052 0.948 9 C 0.032 3.968 10 C -0.094 4.094 11 C 0.082 3.918 12 H 0.099 0.901 13 N -0.806 5.806 14 C 0.494 3.506 15 O -0.550 6.550 16 N -0.709 5.709 17 C 0.171 3.829 18 H 0.122 0.878 19 C 0.508 3.492 20 N -0.854 5.854 21 O -0.513 6.513 22 C -0.107 4.107 23 C -0.078 4.078 24 C -0.149 4.149 25 C 0.105 3.895 26 F -0.137 7.137 27 C -0.144 4.144 28 C -0.075 4.075 29 H 0.259 0.741 30 H 0.012 0.988 31 H 0.034 0.966 32 H 0.053 0.947 33 H 0.056 0.944 34 H 0.333 0.667 35 H 0.348 0.652 36 H 0.407 0.593 37 H 0.398 0.602 38 H 0.403 0.597 39 H 0.139 0.861 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.791 -24.936 -10.041 28.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.143 4.143 3 Si 0.717 3.283 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.203 1.203 7 C -0.559 4.559 8 H 0.070 0.930 9 C -0.005 4.005 10 C -0.132 4.132 11 C -0.034 4.034 12 H 0.117 0.883 13 N -0.333 5.333 14 C 0.281 3.719 15 O -0.427 6.427 16 N -0.363 5.363 17 C 0.061 3.939 18 H 0.140 0.860 19 C 0.289 3.711 20 N -0.419 5.419 21 O -0.386 6.386 22 C -0.108 4.108 23 C -0.096 4.096 24 C -0.168 4.168 25 C 0.085 3.915 26 F -0.116 7.116 27 C -0.163 4.163 28 C -0.093 4.093 29 H 0.069 0.931 30 H 0.031 0.969 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.145 0.855 35 H 0.163 0.837 36 H 0.244 0.756 37 H 0.226 0.774 38 H 0.234 0.766 39 H 0.156 0.844 40 H 0.158 0.842 41 H 0.160 0.840 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 8.402 -23.747 -9.380 26.879 hybrid contribution 1.350 -0.237 -0.615 1.503 sum 9.752 -23.984 -9.996 27.753 Atomic orbital electron populations 1.69964 1.05923 1.26449 1.51017 1.24982 0.94798 0.98997 0.95539 0.86715 0.79600 0.83423 0.78571 1.20370 1.21379 1.20323 1.21270 0.92963 0.91326 1.50379 0.92973 1.19012 0.93519 0.89861 0.98106 1.21650 0.98687 0.91756 1.01112 1.21847 0.93336 0.93155 0.95096 0.88325 1.59004 1.26887 1.44176 1.03269 1.22861 0.81724 0.85330 0.82025 1.90633 1.61305 1.53882 1.36885 1.45929 1.44943 1.34134 1.11266 1.19542 0.88016 0.91529 0.94855 0.86031 1.20921 0.87179 0.86437 0.76541 1.43772 1.10199 1.13167 1.74721 1.90839 1.84993 1.17003 1.45811 1.19669 1.03495 0.94008 0.93596 1.20859 0.97968 0.93876 0.96905 1.21133 1.03549 1.00515 0.91579 1.17801 1.01882 0.92275 0.79505 1.91526 1.93669 1.87944 1.38462 1.21200 1.02787 0.93635 0.98681 1.20940 0.96692 1.00627 0.91077 0.93108 0.96924 0.94715 0.92788 0.92572 0.85501 0.83741 0.75643 0.77385 0.76596 0.84361 0.84190 0.84025 0.84361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.33 13.29 55.43 0.74 -26.60 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 3 Si 0.89 22.27 29.54 -169.99 -5.02 17.25 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 7 C -0.52 -15.15 9.11 -34.44 -0.31 -15.47 16 8 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.84 4.86 -27.88 -0.14 0.70 16 10 C -0.09 -1.99 4.78 -26.73 -0.13 -2.12 16 11 C 0.08 1.39 3.15 -68.87 -0.22 1.17 16 12 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 13 N -0.81 -13.68 8.44 -5.66 -0.05 -13.73 16 14 C 0.49 7.84 6.90 -10.99 -0.08 7.76 16 15 O -0.55 -9.98 15.91 5.56 0.09 -9.89 16 16 N -0.71 -8.88 4.56 -56.07 -0.26 -9.14 16 17 C 0.17 1.75 2.58 -70.23 -0.18 1.57 16 18 H 0.12 1.19 7.44 -51.93 -0.39 0.80 16 19 C 0.51 6.16 7.44 -10.98 -0.08 6.08 16 20 N -0.85 -6.45 8.77 31.22 0.27 -6.17 16 21 O -0.51 -8.98 17.16 5.56 0.10 -8.88 16 22 C -0.11 -0.81 4.74 -104.62 -0.50 -1.31 16 23 C -0.08 -0.43 9.51 -39.59 -0.38 -0.81 16 24 C -0.15 -0.88 10.03 -39.51 -0.40 -1.27 16 25 C 0.10 0.79 7.30 -39.42 -0.29 0.51 16 26 F -0.14 -1.19 17.27 2.25 0.04 -1.15 16 27 C -0.14 -1.07 10.03 -39.51 -0.40 -1.47 16 28 C -0.07 -0.59 9.05 -39.59 -0.36 -0.95 16 29 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 30 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.03 0.98 7.75 -51.93 -0.40 0.57 16 32 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 33 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.33 4.79 9.06 -39.29 -0.36 4.44 16 35 H 0.35 6.08 8.58 -39.29 -0.34 5.74 16 36 H 0.41 4.47 6.87 -40.82 -0.28 4.19 16 37 H 0.40 1.69 8.55 -40.82 -0.35 1.34 16 38 H 0.40 2.77 8.93 -40.82 -0.36 2.41 16 39 H 0.14 0.41 8.04 -52.49 -0.42 -0.01 16 40 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 41 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 42 H 0.14 1.09 6.91 -52.49 -0.36 0.73 16 LS Contribution 368.05 15.07 5.55 5.55 Total: -1.00 -37.33 368.05 -7.42 -44.76 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: -5.34 Total: 12.02 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: -3.54 Total: -4.00 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: 0.71 Total: -55.64 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: 0.18 Total: -18.77 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -37.33 -7.42 -44.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349092916.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.162 kcal (2) G-P(sol) polarization free energy of solvation -37.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds