Wall clock time and date at job start Tue Mar 31 2020 14:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 120.00251 * 2 1 4 4 H 1.48503 * 109.46984 * 239.99696 * 3 2 1 5 5 H 1.48498 * 109.47014 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47407 * 119.99268 * 3 2 1 7 7 C 1.37877 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99711 * 185.05500 * 7 2 1 9 9 C 1.50702 * 120.00154 * 5.05881 * 7 2 1 10 10 H 1.08998 * 109.47022 * 32.96842 * 9 7 2 11 11 C 1.50698 * 109.47287 * 152.96717 * 9 7 2 12 12 O 1.21277 * 120.00108 * 120.00002 * 11 9 7 13 13 N 1.34780 * 119.99937 * 300.00412 * 11 9 7 14 14 C 1.39445 * 120.00006 * 184.97728 * 13 11 9 15 15 C 1.39389 * 120.14816 * 174.27843 * 14 13 11 16 16 C 1.38614 * 117.91080 * 179.72509 * 15 14 13 17 17 C 1.38772 * 118.03322 * 0.02562 * 16 15 14 18 18 C 1.50701 * 120.00315 * 180.02562 * 17 16 15 19 19 C 1.52997 * 117.49891 * 343.62374 * 18 17 16 20 20 C 1.52992 * 60.00210 * 252.50905 * 19 18 17 21 21 N 1.31831 * 119.99685 * 0.02562 * 17 16 15 22 22 N 1.28346 * 122.27327 * 359.97438 * 21 17 16 23 23 C 1.50696 * 109.47111 * 272.96834 * 9 7 2 24 24 C 1.38239 * 119.99800 * 306.76716 * 23 9 7 25 25 C 1.38241 * 119.99735 * 179.78770 * 24 23 9 26 26 C 1.38234 * 119.99821 * 0.44330 * 25 24 23 27 27 C 1.38241 * 120.00222 * 359.81163 * 26 25 24 28 28 C 1.38234 * 119.99884 * 127.04257 * 23 9 7 29 29 H 0.97008 * 119.99733 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99751 * 4.96947 * 13 11 9 31 31 H 1.08007 * 121.04425 * 359.70542 * 15 14 13 32 32 H 1.08007 * 120.98568 * 179.97438 * 16 15 14 33 33 H 1.08995 * 115.54708 * 129.33123 * 18 17 16 34 34 H 1.09006 * 117.49929 * 0.02562 * 19 18 17 35 35 H 1.09001 * 117.49580 * 145.01418 * 19 18 17 36 36 H 1.09005 * 117.49996 * 252.51101 * 20 19 18 37 37 H 1.09001 * 117.51698 * 107.47780 * 20 19 18 38 38 H 1.07996 * 119.99926 * 0.02562 * 24 23 9 39 39 H 1.07998 * 120.00017 * 180.27597 * 25 24 23 40 40 H 1.08003 * 119.99973 * 179.83170 * 26 25 24 41 41 H 1.08002 * 119.99914 * 179.97438 * 27 26 25 42 42 H 1.07995 * 120.00196 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0044 -1.1941 0.0005 8 1 3.0813 -1.1959 0.0830 9 6 1.2553 -2.4967 -0.1140 10 1 0.3722 -2.3544 -0.7368 11 6 2.1488 -3.5367 -0.7393 12 8 2.4168 -4.5510 -0.1308 13 7 2.6501 -3.3397 -1.9748 14 6 3.3908 -4.3451 -2.5952 15 6 3.8092 -4.1928 -3.9160 16 6 4.5478 -5.2184 -4.4851 17 6 4.8246 -6.3329 -3.7059 18 6 5.6246 -7.4738 -4.2798 19 6 5.7760 -7.5356 -5.8010 20 6 4.8677 -8.5345 -5.0815 21 7 4.3875 -6.3935 -2.4636 22 7 3.7032 -5.4474 -1.9309 23 6 0.8337 -2.9559 1.2580 24 6 1.7713 -3.0688 2.2675 25 6 1.3837 -3.4859 3.5272 26 6 0.0602 -3.7989 3.7749 27 6 -0.8764 -3.6911 2.7639 28 6 -0.4896 -3.2698 1.5054 29 1 -0.4850 0.8401 -0.0004 30 1 2.4955 -2.4985 -2.4324 31 1 3.5653 -3.3036 -4.4785 32 1 4.8970 -5.1526 -5.5051 33 1 6.4686 -7.8067 -3.6757 34 1 5.2973 -6.7508 -6.3867 35 1 6.7200 -7.9090 -6.1980 36 1 5.2139 -9.5653 -5.0052 37 1 3.7909 -8.4074 -5.1935 38 1 2.8058 -2.8274 2.0731 39 1 2.1154 -3.5697 4.3172 40 1 -0.2421 -4.1273 4.7583 41 1 -1.9104 -3.9360 2.9573 42 1 -1.2214 -3.1855 0.7156 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361353871.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:22 Heat of formation + Delta-G solvation = 64.075858 kcal Electronic energy + Delta-G solvation = -26058.510394 eV Core-core repulsion = 22390.370258 eV Total energy + Delta-G solvation = -3668.140136 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.30998 -40.86438 -39.44560 -38.17213 -36.12071 -35.55641 -33.79258 -32.95723 -31.78584 -31.54565 -29.19037 -26.36389 -25.96038 -25.29677 -23.27474 -23.19259 -22.65334 -22.11567 -21.19685 -19.07541 -18.87092 -18.35849 -17.53966 -17.38614 -17.27183 -16.54877 -16.23536 -15.93807 -15.75347 -15.53972 -15.25293 -14.98842 -14.74146 -14.37522 -14.08200 -13.95181 -13.56237 -13.40612 -13.30484 -12.91443 -12.74446 -12.51896 -12.31501 -12.29196 -12.02927 -11.98292 -11.71681 -11.58287 -11.44320 -11.31052 -11.01552 -10.69492 -10.63945 -10.20130 -9.59419 -9.56096 -9.27882 -8.22252 -6.37112 -0.11739 -0.04150 0.75177 0.78219 1.44144 1.46389 1.53072 1.79992 1.92937 2.40790 2.60680 2.87132 3.05493 3.15374 3.24444 3.50653 3.68957 3.79855 3.94193 4.11012 4.15342 4.19862 4.27446 4.28147 4.40678 4.45114 4.49101 4.63723 4.80971 4.84149 4.91590 4.94418 5.03537 5.04537 5.11657 5.21989 5.28873 5.34755 5.41678 5.53387 5.62635 5.77083 5.80341 5.89338 6.20038 6.33442 6.44579 6.68439 7.26811 7.32991 7.91059 8.84958 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.003569 C = 0.002978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.472558 B = 7842.912616 C = 9399.035924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.039 3.961 3 Si 0.956 3.044 4 H -0.258 1.258 5 H -0.284 1.284 6 H -0.282 1.282 7 C -0.528 4.528 8 H 0.055 0.945 9 C 0.064 3.936 10 H 0.069 0.931 11 C 0.516 3.484 12 O -0.525 6.525 13 N -0.641 5.641 14 C 0.278 3.722 15 C -0.142 4.142 16 C -0.079 4.079 17 C 0.057 3.943 18 C -0.124 4.124 19 C -0.142 4.142 20 C -0.167 4.167 21 N -0.258 5.258 22 N -0.287 5.287 23 C -0.035 4.035 24 C -0.112 4.112 25 C -0.138 4.138 26 C -0.143 4.143 27 C -0.131 4.131 28 C -0.136 4.136 29 H 0.268 0.732 30 H 0.434 0.566 31 H 0.192 0.808 32 H 0.199 0.801 33 H 0.121 0.879 34 H 0.115 0.885 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.146 0.854 41 H 0.140 0.860 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.913 -7.636 -12.541 16.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.164 4.164 3 Si 0.781 3.219 4 H -0.182 1.182 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.565 4.565 8 H 0.073 0.927 9 C 0.043 3.957 10 H 0.087 0.913 11 C 0.305 3.695 12 O -0.397 6.397 13 N -0.289 5.289 14 C 0.039 3.961 15 C -0.173 4.173 16 C -0.107 4.107 17 C -0.092 4.092 18 C -0.144 4.144 19 C -0.179 4.179 20 C -0.205 4.205 21 N -0.099 5.099 22 N -0.134 5.134 23 C -0.036 4.036 24 C -0.130 4.130 25 C -0.155 4.155 26 C -0.161 4.161 27 C -0.149 4.149 28 C -0.155 4.155 29 H 0.077 0.923 30 H 0.275 0.725 31 H 0.209 0.791 32 H 0.216 0.784 33 H 0.139 0.861 34 H 0.133 0.867 35 H 0.143 0.857 36 H 0.132 0.868 37 H 0.103 0.897 38 H 0.111 0.889 39 H 0.151 0.849 40 H 0.164 0.836 41 H 0.158 0.842 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 6.720 -9.004 -10.572 15.427 hybrid contribution 0.161 2.268 -0.970 2.472 sum 6.882 -6.737 -11.542 15.032 Atomic orbital electron populations 1.70029 1.07131 1.28196 1.47994 1.25580 0.95490 1.01989 0.93336 0.85648 0.78447 0.78765 0.79075 1.18212 1.20887 1.20822 1.20701 0.92760 0.89081 1.53993 0.92705 1.17959 0.95146 0.91599 0.90980 0.91320 1.21931 0.79930 0.87361 0.80253 1.90713 1.58247 1.29722 1.61040 1.43597 1.50562 1.16980 1.17770 1.20791 0.92669 0.90663 0.91940 1.22381 0.99379 1.03202 0.92342 1.22558 0.94420 0.90756 1.02946 1.22496 0.97729 0.97022 0.91946 1.20675 1.01251 0.96676 0.95785 1.23264 1.02516 1.01612 0.90493 1.23055 0.98462 0.96307 1.02648 1.72878 1.05827 1.19105 1.12068 1.73584 1.11464 0.99125 1.29249 1.20040 0.93444 0.93448 0.96668 1.20849 0.98533 0.99808 0.93824 1.21308 0.97283 1.00535 0.96421 1.21265 0.92838 1.02037 0.99917 1.21310 1.00335 1.00374 0.92853 1.21113 0.95566 1.00795 0.97986 0.92252 0.72529 0.79057 0.78379 0.86121 0.86698 0.85692 0.86809 0.89724 0.88949 0.84900 0.83578 0.84198 0.87331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.03 12.98 21.45 0.28 -46.75 16 2 C 0.04 1.96 5.45 84.66 0.46 2.42 16 3 Si 0.96 39.74 29.54 68.60 2.03 41.77 16 4 H -0.26 -9.97 7.11 99.48 0.71 -9.27 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.37 16 7 C -0.53 -26.46 7.38 25.60 0.19 -26.27 16 8 H 0.05 2.79 7.82 -2.91 -0.02 2.76 16 9 C 0.06 3.16 2.25 -13.03 -0.03 3.13 16 10 H 0.07 3.52 7.38 -2.39 -0.02 3.50 16 11 C 0.52 24.37 7.00 87.66 0.61 24.99 16 12 O -0.52 -28.12 13.75 -3.02 -0.04 -28.16 16 13 N -0.64 -24.57 5.32 -308.09 -1.64 -26.21 16 14 C 0.28 10.05 7.50 132.96 1.00 11.05 16 15 C -0.14 -3.36 10.07 22.64 0.23 -3.14 16 16 C -0.08 -1.57 9.44 22.49 0.21 -1.35 16 17 C 0.06 1.51 6.54 42.69 0.28 1.79 16 18 C -0.12 -2.32 6.23 -11.54 -0.07 -2.39 16 19 C -0.14 -1.43 9.82 30.59 0.30 -1.13 16 20 C -0.17 -2.50 10.23 30.59 0.31 -2.19 16 21 N -0.26 -9.80 11.42 -47.58 -0.54 -10.34 16 22 N -0.29 -12.44 9.09 -54.93 -0.50 -12.94 16 23 C -0.03 -1.73 4.29 -19.87 -0.09 -1.81 16 24 C -0.11 -5.36 8.35 22.27 0.19 -5.18 16 25 C -0.14 -5.57 10.05 22.27 0.22 -5.35 16 26 C -0.14 -5.21 10.05 22.27 0.22 -4.98 16 27 C -0.13 -5.05 10.05 22.27 0.22 -4.82 16 28 C -0.14 -6.20 9.67 22.27 0.22 -5.99 16 29 H 0.27 13.44 8.31 -92.70 -0.77 12.67 16 30 H 0.43 14.09 8.53 -92.70 -0.79 13.30 16 31 H 0.19 2.83 8.06 -2.91 -0.02 2.81 16 32 H 0.20 1.86 6.36 -2.91 -0.02 1.84 16 33 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 34 H 0.11 0.79 6.44 -2.38 -0.02 0.77 16 35 H 0.12 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 38 H 0.09 4.62 7.87 -2.91 -0.02 4.59 16 39 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 40 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 41 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 42 H 0.11 4.81 7.96 -2.91 -0.02 4.79 16 Total: -1.00 -74.04 363.23 4.33 -69.71 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: 0.27 Total: 34.17 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: 4.48 Total: -21.23 kcal Atomic # 7 Polarization: -93.84 SS G_CDS: -2.40 Total: -96.24 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.04 Total: -28.16 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 2.03 Total: 41.77 kcal Total: -74.04 4.33 -69.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361353871.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.781 kcal (2) G-P(sol) polarization free energy of solvation -74.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.706 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds