Wall clock time and date at job start Tue Mar 31 2020 14:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99811 * 2 1 4 4 H 1.48498 * 109.47386 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47340 * 299.99927 * 3 2 1 6 6 H 1.48506 * 109.47546 * 59.99754 * 3 2 1 7 7 C 1.37874 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00070 * 182.00568 * 7 2 1 9 9 C 1.50706 * 119.99811 * 2.00719 * 7 2 1 10 10 H 1.08997 * 109.47109 * 174.59998 * 9 7 2 11 11 C 1.50699 * 109.47134 * 54.60162 * 9 7 2 12 12 O 1.21296 * 119.99783 * 240.00228 * 11 9 7 13 13 N 1.34774 * 120.00153 * 59.99847 * 11 9 7 14 14 C 1.39978 * 120.00087 * 184.90189 * 13 11 9 15 15 C 1.39229 * 120.87071 * 325.15764 * 14 13 11 16 16 N 1.32273 * 119.01862 * 179.76379 * 15 14 13 17 17 C 1.31800 * 120.88583 * 0.51865 * 16 15 14 18 18 C 1.50703 * 119.03457 * 179.70522 * 17 16 15 19 19 C 1.52998 * 117.49625 * 8.64408 * 18 17 16 20 20 C 1.53002 * 60.00127 * 252.51207 * 19 18 17 21 21 N 1.31791 * 121.92702 * 359.73079 * 17 16 15 22 22 C 1.32274 * 120.89368 * 359.97438 * 21 17 16 23 23 C 1.50704 * 109.47072 * 294.60005 * 9 7 2 24 24 C 1.38227 * 119.99782 * 168.48331 * 23 9 7 25 25 C 1.38235 * 120.00117 * 180.02562 * 24 23 9 26 26 C 1.38244 * 119.99748 * 359.95476 * 25 24 23 27 27 C 1.38230 * 119.99772 * 359.97438 * 26 25 24 28 28 C 1.38234 * 120.00477 * 0.07031 * 27 26 25 29 29 H 0.97001 * 120.00253 * 0.02562 * 1 2 3 30 30 H 0.96996 * 119.99844 * 4.90012 * 13 11 9 31 31 H 1.08004 * 120.49340 * 359.97438 * 15 14 13 32 32 H 1.08992 * 115.54535 * 154.35355 * 18 17 16 33 33 H 1.09000 * 117.50356 * 0.02562 * 19 18 17 34 34 H 1.09001 * 117.49570 * 145.02002 * 19 18 17 35 35 H 1.08997 * 117.49636 * 252.51748 * 20 19 18 36 36 H 1.09001 * 117.49870 * 107.49126 * 20 19 18 37 37 H 1.07995 * 120.49523 * 179.97438 * 22 21 17 38 38 H 1.07999 * 120.00330 * 359.97438 * 24 23 9 39 39 H 1.08002 * 120.00657 * 179.97438 * 25 24 23 40 40 H 1.08002 * 119.99905 * 179.72272 * 26 25 24 41 41 H 1.07999 * 119.99967 * 179.97438 * 27 26 25 42 42 H 1.08003 * 120.00420 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0840 -1.1942 0.0333 9 6 1.2517 -2.4988 -0.0446 10 1 1.9589 -3.3233 -0.1340 11 6 0.3234 -2.5023 -1.2317 12 8 -0.8721 -2.6237 -1.0663 13 7 0.8215 -2.3705 -2.4771 14 6 -0.0462 -2.2706 -3.5709 15 6 -1.2503 -2.9692 -3.5938 16 7 -2.0448 -2.8444 -4.6440 17 6 -1.7047 -2.0802 -5.6626 18 6 -2.6384 -1.9735 -6.8407 19 6 -4.0265 -2.6016 -6.7011 20 6 -2.9744 -3.2617 -7.5947 21 7 -0.5717 -1.4072 -5.6812 22 6 0.2747 -1.4741 -4.6669 23 6 0.4495 -2.6599 1.2210 24 6 -0.5042 -3.6563 1.3125 25 6 -1.2404 -3.8038 2.4732 26 6 -1.0222 -2.9554 3.5427 27 6 -0.0674 -1.9600 3.4516 28 6 0.6682 -1.8119 2.2906 29 1 -0.4850 0.8400 -0.0004 30 1 1.7812 -2.3449 -2.6154 31 1 -1.5332 -3.6011 -2.7648 32 1 -2.5570 -1.0559 -7.4232 33 1 -4.2645 -3.0918 -5.7570 34 1 -4.8588 -2.0972 -7.1918 35 1 -3.1147 -3.1914 -8.6733 36 1 -2.5202 -4.1864 -7.2386 37 1 1.2015 -0.9202 -4.6891 38 1 -0.6748 -4.3190 0.4770 39 1 -1.9859 -4.5820 2.5447 40 1 -1.6005 -3.0678 4.4478 41 1 0.1029 -1.2970 4.2869 42 1 1.4139 -1.0339 2.2193 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361744352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:27 Heat of formation + Delta-G solvation = 68.611078 kcal Electronic energy + Delta-G solvation = -26711.168816 eV Core-core repulsion = 23043.225342 eV Total energy + Delta-G solvation = -3667.943474 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.94123 -39.24693 -37.80218 -36.83366 -34.27355 -33.86323 -33.30931 -31.03622 -29.84622 -29.77491 -27.38480 -24.80206 -24.40809 -23.78798 -22.32583 -21.43707 -21.23816 -20.63511 -19.61976 -17.80768 -16.91394 -16.80981 -16.60776 -15.68407 -15.36847 -15.12608 -14.87634 -14.49843 -14.14449 -13.94456 -13.75110 -13.56367 -13.20595 -12.77934 -12.38717 -12.32301 -12.25776 -12.04555 -11.52714 -11.44103 -11.12692 -11.09660 -10.94486 -10.83945 -10.62669 -10.47459 -10.42386 -10.16334 -10.03808 -9.81407 -9.54269 -8.98304 -8.84018 -8.56052 -7.81044 -7.78820 -7.52893 -6.30659 -4.48393 1.21757 1.43033 2.42421 2.50994 3.09843 3.21451 3.22339 3.58836 3.63878 3.91263 4.09475 4.16853 4.32539 4.50871 4.87353 4.91942 4.94053 4.97280 5.09055 5.13022 5.33048 5.59144 5.63799 5.77669 5.80972 5.86880 5.96167 6.05706 6.14225 6.22897 6.29704 6.31214 6.53837 6.57386 6.61151 6.73734 7.00179 7.06576 7.10161 7.39825 7.45039 7.53225 7.53890 7.62915 8.00821 8.12187 8.15833 8.43358 8.57121 9.17457 9.23335 10.69659 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013835 B = 0.004070 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.422304 B = 6878.596201 C = 8236.771497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.842 5.842 2 C 0.074 3.926 3 Si 0.888 3.112 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.281 1.281 7 C -0.545 4.545 8 H 0.072 0.928 9 C 0.061 3.939 10 H 0.064 0.936 11 C 0.550 3.450 12 O -0.522 6.522 13 N -0.665 5.665 14 C 0.078 3.922 15 C 0.140 3.860 16 N -0.499 5.499 17 C 0.301 3.699 18 C -0.091 4.091 19 C -0.157 4.157 20 C -0.160 4.160 21 N -0.498 5.498 22 C 0.110 3.890 23 C -0.019 4.019 24 C -0.102 4.102 25 C -0.143 4.143 26 C -0.142 4.142 27 C -0.147 4.147 28 C -0.062 4.062 29 H 0.267 0.733 30 H 0.412 0.588 31 H 0.180 0.820 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.167 0.833 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.127 -5.508 -6.792 8.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.135 4.135 3 Si 0.715 3.285 4 H -0.193 1.193 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.582 4.582 8 H 0.090 0.910 9 C 0.040 3.960 10 H 0.081 0.919 11 C 0.341 3.659 12 O -0.396 6.396 13 N -0.310 5.310 14 C -0.024 4.024 15 C -0.029 4.029 16 N -0.212 5.212 17 C 0.033 3.967 18 C -0.111 4.111 19 C -0.195 4.195 20 C -0.198 4.198 21 N -0.211 5.211 22 C -0.060 4.060 23 C -0.020 4.020 24 C -0.120 4.120 25 C -0.161 4.161 26 C -0.160 4.160 27 C -0.165 4.165 28 C -0.080 4.080 29 H 0.077 0.923 30 H 0.248 0.752 31 H 0.197 0.803 32 H 0.141 0.859 33 H 0.128 0.872 34 H 0.115 0.885 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.184 0.816 38 H 0.124 0.876 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.121 0.879 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.750 -5.378 -7.313 9.245 hybrid contribution 1.343 1.417 0.768 2.097 sum -0.407 -3.962 -6.546 7.662 Atomic orbital electron populations 1.70044 1.05526 1.27306 1.44547 1.25082 0.94860 0.99456 0.94084 0.86579 0.80289 0.83597 0.78070 1.19297 1.20845 1.20640 1.20755 0.93168 0.88413 1.55864 0.91016 1.17867 0.92454 0.98719 0.86968 0.91859 1.21585 0.89800 0.71492 0.83003 1.90551 1.16839 1.47464 1.84705 1.43590 1.09246 1.73595 1.04538 1.19693 0.95188 0.96864 0.90686 1.23491 0.89363 0.94961 0.95055 1.68063 1.33173 1.19071 1.00923 1.21839 0.90434 0.91376 0.93023 1.20472 0.95871 0.98770 0.95944 1.23001 0.91007 1.02997 1.02448 1.22950 1.03259 0.95668 0.97953 1.67949 1.03766 1.21638 1.27759 1.23035 0.99394 0.94265 0.89261 1.19751 0.94812 0.92554 0.94924 1.20939 0.96207 0.98717 0.96180 1.20828 1.00629 1.00245 0.94385 1.20808 0.99553 0.97448 0.98198 1.21014 0.98326 0.98827 0.98328 1.21160 0.98340 0.97180 0.91331 0.92288 0.75239 0.80327 0.85869 0.87198 0.88524 0.88339 0.88717 0.81622 0.87589 0.87955 0.88082 0.87932 0.85311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.94 10.87 55.43 0.60 -21.33 16 2 C 0.07 1.75 3.96 -17.82 -0.07 1.68 16 3 Si 0.89 18.95 29.54 -169.99 -5.02 13.93 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 6 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 7 C -0.54 -12.23 7.18 -34.44 -0.25 -12.47 16 8 H 0.07 1.56 7.81 -52.49 -0.41 1.15 16 9 C 0.06 1.31 2.77 -94.07 -0.26 1.05 16 10 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 11 C 0.55 11.76 5.28 -10.99 -0.06 11.71 16 12 O -0.52 -12.55 11.54 5.54 0.06 -12.49 16 13 N -0.67 -12.04 5.24 -9.68 -0.05 -12.09 16 14 C 0.08 1.40 6.35 -83.40 -0.53 0.87 16 15 C 0.14 2.64 9.98 -16.99 -0.17 2.47 16 16 N -0.50 -9.01 9.33 -10.58 -0.10 -9.11 16 17 C 0.30 5.12 7.31 -157.19 -1.15 3.97 16 18 C -0.09 -1.22 6.23 -91.77 -0.57 -1.79 16 19 C -0.16 -1.83 10.01 -26.73 -0.27 -2.09 16 20 C -0.16 -1.75 10.23 -26.73 -0.27 -2.03 16 21 N -0.50 -8.64 10.32 -10.58 -0.11 -8.75 16 22 C 0.11 1.84 11.26 -16.99 -0.19 1.65 16 23 C -0.02 -0.43 4.54 -104.62 -0.47 -0.91 16 24 C -0.10 -2.15 8.22 -39.59 -0.33 -2.48 16 25 C -0.14 -2.76 10.05 -39.58 -0.40 -3.16 16 26 C -0.14 -2.68 10.05 -39.58 -0.40 -3.07 16 27 C -0.15 -2.93 10.05 -39.59 -0.40 -3.33 16 28 C -0.06 -1.38 8.21 -39.58 -0.32 -1.70 16 29 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 30 H 0.41 6.32 8.78 -40.82 -0.36 5.96 16 31 H 0.18 3.48 6.32 -52.48 -0.33 3.15 16 32 H 0.12 1.51 8.14 -51.93 -0.42 1.09 16 33 H 0.11 1.45 7.54 -51.93 -0.39 1.06 16 34 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.17 2.33 8.06 -52.49 -0.42 1.90 16 38 H 0.11 2.16 7.12 -52.49 -0.37 1.78 16 39 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.10 1.61 8.06 -52.49 -0.42 1.19 16 41 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 42 H 0.13 2.95 5.97 -52.48 -0.31 2.64 16 LS Contribution 354.61 15.07 5.34 5.34 Total: -1.00 -28.73 354.61 -10.49 -39.22 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -5.12 Total: 14.90 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -6.11 Total: -9.63 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 0.34 Total: -51.28 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.06 Total: -12.49 kcal Atomic # 14 Polarization: 18.95 SS G_CDS: -5.02 Total: 13.93 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -28.73 -10.49 -39.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361744352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.834 kcal (2) G-P(sol) polarization free energy of solvation -28.729 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds