Wall clock time and date at job start Tue Mar 31 2020 14:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86796 * 119.99811 * 2 1 4 4 H 1.48498 * 109.47386 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47340 * 299.99927 * 3 2 1 6 6 H 1.48506 * 109.47546 * 59.99754 * 3 2 1 7 7 C 1.37874 * 120.00274 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00070 * 182.00568 * 7 2 1 9 9 C 1.50706 * 119.99811 * 2.00719 * 7 2 1 10 10 H 1.08997 * 109.47109 * 174.59998 * 9 7 2 11 11 C 1.50699 * 109.47134 * 54.60162 * 9 7 2 12 12 O 1.21296 * 119.99783 * 240.00228 * 11 9 7 13 13 N 1.34774 * 120.00153 * 59.99847 * 11 9 7 14 14 C 1.39978 * 120.00087 * 184.90189 * 13 11 9 15 15 C 1.39229 * 120.87071 * 325.15764 * 14 13 11 16 16 N 1.32273 * 119.01862 * 179.76379 * 15 14 13 17 17 C 1.31800 * 120.88583 * 0.51865 * 16 15 14 18 18 C 1.50703 * 119.03457 * 179.70522 * 17 16 15 19 19 C 1.52998 * 117.49625 * 8.64408 * 18 17 16 20 20 C 1.53002 * 60.00127 * 252.51207 * 19 18 17 21 21 N 1.31791 * 121.92702 * 359.73079 * 17 16 15 22 22 C 1.32274 * 120.89368 * 359.97438 * 21 17 16 23 23 C 1.50704 * 109.47072 * 294.60005 * 9 7 2 24 24 C 1.38227 * 119.99782 * 168.48331 * 23 9 7 25 25 C 1.38235 * 120.00117 * 180.02562 * 24 23 9 26 26 C 1.38244 * 119.99748 * 359.95476 * 25 24 23 27 27 C 1.38230 * 119.99772 * 359.97438 * 26 25 24 28 28 C 1.38234 * 120.00477 * 0.07031 * 27 26 25 29 29 H 0.97001 * 120.00253 * 0.02562 * 1 2 3 30 30 H 0.96996 * 119.99844 * 4.90012 * 13 11 9 31 31 H 1.08004 * 120.49340 * 359.97438 * 15 14 13 32 32 H 1.08992 * 115.54535 * 154.35355 * 18 17 16 33 33 H 1.09000 * 117.50356 * 0.02562 * 19 18 17 34 34 H 1.09001 * 117.49570 * 145.02002 * 19 18 17 35 35 H 1.08997 * 117.49636 * 252.51748 * 20 19 18 36 36 H 1.09001 * 117.49870 * 107.49126 * 20 19 18 37 37 H 1.07995 * 120.49523 * 179.97438 * 22 21 17 38 38 H 1.07999 * 120.00330 * 359.97438 * 24 23 9 39 39 H 1.08002 * 120.00657 * 179.97438 * 25 24 23 40 40 H 1.08002 * 119.99905 * 179.72272 * 26 25 24 41 41 H 1.07999 * 119.99967 * 179.97438 * 27 26 25 42 42 H 1.08003 * 120.00420 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0840 -1.1942 0.0333 9 6 1.2517 -2.4988 -0.0446 10 1 1.9589 -3.3233 -0.1340 11 6 0.3234 -2.5023 -1.2317 12 8 -0.8721 -2.6237 -1.0663 13 7 0.8215 -2.3705 -2.4771 14 6 -0.0462 -2.2706 -3.5709 15 6 -1.2503 -2.9692 -3.5938 16 7 -2.0448 -2.8444 -4.6440 17 6 -1.7047 -2.0802 -5.6626 18 6 -2.6384 -1.9735 -6.8407 19 6 -4.0265 -2.6016 -6.7011 20 6 -2.9744 -3.2617 -7.5947 21 7 -0.5717 -1.4072 -5.6812 22 6 0.2747 -1.4741 -4.6669 23 6 0.4495 -2.6599 1.2210 24 6 -0.5042 -3.6563 1.3125 25 6 -1.2404 -3.8038 2.4732 26 6 -1.0222 -2.9554 3.5427 27 6 -0.0674 -1.9600 3.4516 28 6 0.6682 -1.8119 2.2906 29 1 -0.4850 0.8400 -0.0004 30 1 1.7812 -2.3449 -2.6154 31 1 -1.5332 -3.6011 -2.7648 32 1 -2.5570 -1.0559 -7.4232 33 1 -4.2645 -3.0918 -5.7570 34 1 -4.8588 -2.0972 -7.1918 35 1 -3.1147 -3.1914 -8.6733 36 1 -2.5202 -4.1864 -7.2386 37 1 1.2015 -0.9202 -4.6891 38 1 -0.6748 -4.3190 0.4770 39 1 -1.9859 -4.5820 2.5447 40 1 -1.6005 -3.0678 4.4478 41 1 0.1029 -1.2970 4.2869 42 1 1.4139 -1.0339 2.2193 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361744352.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:26 Heat of formation + Delta-G solvation = 53.889249 kcal Electronic energy + Delta-G solvation = -26711.807203 eV Core-core repulsion = 23043.225342 eV Total energy + Delta-G solvation = -3668.581861 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.32498 -40.81974 -39.31577 -37.92876 -35.76822 -35.59351 -34.69821 -32.74378 -31.36681 -31.24049 -29.00181 -26.31368 -25.80575 -25.32594 -23.21663 -22.99475 -22.61568 -22.01830 -21.22231 -19.30911 -18.49823 -18.24589 -17.89996 -17.20005 -16.94738 -16.82794 -16.04285 -15.91983 -15.69248 -15.37685 -15.16311 -15.06400 -14.57573 -14.42611 -14.04181 -13.97112 -13.79250 -13.20072 -13.04966 -12.83234 -12.56417 -12.52339 -12.35046 -12.30629 -12.13595 -11.85857 -11.78885 -11.48039 -11.37591 -11.25595 -11.20539 -10.70479 -10.44700 -10.13345 -9.39811 -9.23487 -9.11544 -8.13384 -6.32841 -0.14977 0.02496 0.85345 0.91906 1.38385 1.46755 1.53542 2.02678 2.29534 2.40843 2.63334 2.90134 3.04402 3.16219 3.27278 3.31005 3.55156 3.92706 3.94439 4.04093 4.14867 4.30600 4.34962 4.40797 4.48778 4.59880 4.69173 4.79344 4.81919 4.93457 4.96658 5.02353 5.13768 5.17232 5.22418 5.33395 5.43048 5.52842 5.62997 5.67608 5.87829 5.89582 5.95503 6.00900 6.38533 6.51366 6.61257 6.82521 7.06648 7.37601 7.60876 8.85117 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013835 B = 0.004070 C = 0.003399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.422304 B = 6878.596201 C = 8236.771497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.042 3.958 3 Si 0.937 3.063 4 H -0.254 1.254 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.532 4.532 8 H 0.079 0.921 9 C 0.052 3.948 10 H 0.082 0.918 11 C 0.551 3.449 12 O -0.554 6.554 13 N -0.654 5.654 14 C 0.061 3.939 15 C 0.128 3.872 16 N -0.510 5.510 17 C 0.296 3.704 18 C -0.115 4.115 19 C -0.152 4.152 20 C -0.139 4.139 21 N -0.506 5.506 22 C 0.118 3.882 23 C -0.039 4.039 24 C -0.117 4.117 25 C -0.146 4.146 26 C -0.141 4.141 27 C -0.153 4.153 28 C -0.085 4.085 29 H 0.254 0.746 30 H 0.424 0.576 31 H 0.166 0.834 32 H 0.137 0.863 33 H 0.089 0.911 34 H 0.124 0.876 35 H 0.130 0.870 36 H 0.083 0.917 37 H 0.194 0.806 38 H 0.104 0.896 39 H 0.129 0.871 40 H 0.136 0.864 41 H 0.124 0.876 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.020 -5.555 -7.613 9.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.163 4.163 3 Si 0.764 3.236 4 H -0.177 1.177 5 H -0.219 1.219 6 H -0.217 1.217 7 C -0.569 4.569 8 H 0.098 0.902 9 C 0.031 3.969 10 H 0.100 0.900 11 C 0.342 3.658 12 O -0.431 6.431 13 N -0.300 5.300 14 C -0.041 4.041 15 C -0.040 4.040 16 N -0.224 5.224 17 C 0.029 3.971 18 C -0.135 4.135 19 C -0.190 4.190 20 C -0.177 4.177 21 N -0.220 5.220 22 C -0.051 4.051 23 C -0.040 4.040 24 C -0.136 4.136 25 C -0.164 4.164 26 C -0.159 4.159 27 C -0.171 4.171 28 C -0.103 4.103 29 H 0.064 0.936 30 H 0.262 0.738 31 H 0.183 0.817 32 H 0.155 0.845 33 H 0.107 0.893 34 H 0.142 0.858 35 H 0.149 0.851 36 H 0.102 0.898 37 H 0.211 0.789 38 H 0.122 0.878 39 H 0.147 0.853 40 H 0.154 0.846 41 H 0.142 0.858 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -1.555 -5.441 -8.155 9.926 hybrid contribution 1.279 1.368 0.998 2.122 sum -0.276 -4.074 -7.157 8.240 Atomic orbital electron populations 1.70210 1.06897 1.26726 1.47118 1.25553 0.95003 1.01679 0.94061 0.85804 0.80138 0.80732 0.76904 1.17736 1.21855 1.21716 1.20979 0.93472 0.88706 1.53760 0.90250 1.17995 0.92846 0.98955 0.87085 0.89991 1.21516 0.89284 0.71127 0.83826 1.90529 1.18064 1.49116 1.85345 1.43326 1.09906 1.72992 1.03758 1.19728 0.95238 0.97910 0.91190 1.23381 0.90079 0.95356 0.95183 1.68110 1.33258 1.19896 1.01172 1.22622 0.90791 0.90153 0.93538 1.20706 0.96396 1.00746 0.95638 1.23055 0.91148 1.02699 1.02088 1.23044 1.01517 0.93723 0.99465 1.68084 1.04090 1.21951 1.27828 1.23482 1.00038 0.93293 0.88307 1.19888 0.95652 0.93235 0.95192 1.21047 0.96664 0.98840 0.97016 1.21200 1.00544 1.00842 0.93829 1.21189 0.99062 0.96379 0.99251 1.21315 0.98083 0.99455 0.98269 1.21152 0.99196 0.97375 0.92562 0.93625 0.73767 0.81711 0.84489 0.89283 0.85797 0.85145 0.89796 0.78900 0.87801 0.85282 0.84643 0.85806 0.86852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.44 10.87 21.45 0.23 -46.21 16 2 C 0.04 1.98 3.96 84.65 0.34 2.32 16 3 Si 0.94 38.89 29.54 68.60 2.03 40.92 16 4 H -0.25 -9.81 7.11 99.48 0.71 -9.11 16 5 H -0.29 -12.49 7.11 99.48 0.71 -11.79 16 6 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 7 C -0.53 -23.70 7.18 25.60 0.18 -23.51 16 8 H 0.08 3.36 7.81 -2.91 -0.02 3.34 16 9 C 0.05 2.25 2.77 -13.03 -0.04 2.21 16 10 H 0.08 3.10 8.14 -2.39 -0.02 3.08 16 11 C 0.55 23.94 5.28 87.66 0.46 24.40 16 12 O -0.55 -27.49 11.54 -3.08 -0.04 -27.52 16 13 N -0.65 -23.75 5.24 -302.91 -1.59 -25.34 16 14 C 0.06 2.21 6.35 38.32 0.24 2.45 16 15 C 0.13 4.98 9.98 84.86 0.85 5.83 16 16 N -0.51 -18.73 9.33 -187.38 -1.75 -20.47 16 17 C 0.30 9.94 7.31 138.75 1.01 10.95 16 18 C -0.11 -2.91 6.23 -11.54 -0.07 -2.98 16 19 C -0.15 -3.29 10.01 30.59 0.31 -2.98 16 20 C -0.14 -2.74 10.23 30.60 0.31 -2.43 16 21 N -0.51 -17.11 10.32 -187.38 -1.93 -19.04 16 22 C 0.12 3.87 11.26 84.87 0.96 4.82 16 23 C -0.04 -1.74 4.54 -19.87 -0.09 -1.83 16 24 C -0.12 -4.97 8.22 22.27 0.18 -4.79 16 25 C -0.15 -5.48 10.05 22.27 0.22 -5.26 16 26 C -0.14 -5.04 10.05 22.27 0.22 -4.82 16 27 C -0.15 -5.97 10.05 22.27 0.22 -5.75 16 28 C -0.08 -3.77 8.21 22.27 0.18 -3.59 16 29 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 30 H 0.42 12.77 8.78 -92.71 -0.81 11.95 16 31 H 0.17 6.78 6.32 -2.91 -0.02 6.77 16 32 H 0.14 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.09 2.33 7.54 -2.39 -0.02 2.31 16 34 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 35 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 37 H 0.19 5.07 8.06 -2.91 -0.02 5.04 16 38 H 0.10 4.33 7.12 -2.91 -0.02 4.31 16 39 H 0.13 4.05 8.06 -2.91 -0.02 4.03 16 40 H 0.14 3.86 8.06 -2.91 -0.02 3.84 16 41 H 0.12 4.17 8.06 -2.91 -0.02 4.14 16 42 H 0.11 5.28 5.97 -2.91 -0.02 5.26 16 Total: -1.00 -62.39 354.61 2.70 -59.69 By element: Atomic # 1 Polarization: 42.67 SS G_CDS: 0.25 Total: 42.92 kcal Atomic # 6 Polarization: -10.45 SS G_CDS: 5.50 Total: -4.95 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -5.04 Total: -111.07 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.04 Total: -27.52 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.92 kcal Total: -62.39 2.70 -59.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361744352.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.582 kcal (2) G-P(sol) polarization free energy of solvation -62.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds