Wall clock time and date at job start Tue Mar 31 2020 14:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00217 * 2 1 4 4 H 1.48497 * 109.47535 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46847 * 300.00231 * 3 2 1 6 6 H 1.48499 * 109.47249 * 59.99985 * 3 2 1 7 7 C 1.37875 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00145 * 186.91261 * 7 2 1 9 9 C 1.50706 * 119.99835 * 7.17871 * 7 2 1 10 10 H 1.09001 * 109.46785 * 185.32506 * 9 7 2 11 11 C 1.50700 * 109.47152 * 305.32219 * 9 7 2 12 12 O 1.21287 * 120.00232 * 119.99753 * 11 9 7 13 13 N 1.34780 * 119.99961 * 299.99770 * 11 9 7 14 14 C 1.39975 * 119.99878 * 175.37333 * 13 11 9 15 15 C 1.39232 * 120.87001 * 214.25875 * 14 13 11 16 16 N 1.32275 * 119.01441 * 179.76653 * 15 14 13 17 17 C 1.31800 * 120.88914 * 0.52618 * 16 15 14 18 18 C 1.50701 * 119.03309 * 179.70209 * 17 16 15 19 19 C 1.52996 * 117.50179 * 8.64613 * 18 17 16 20 20 C 1.52994 * 117.50088 * 300.01634 * 18 17 16 21 21 N 1.31795 * 121.92554 * 359.72577 * 17 16 15 22 22 C 1.32262 * 120.89155 * 0.02562 * 21 17 16 23 23 C 1.50693 * 109.47023 * 65.32296 * 9 7 2 24 24 C 1.38237 * 120.00085 * 191.38004 * 23 9 7 25 25 C 1.38242 * 120.00113 * 179.81036 * 24 23 9 26 26 C 1.38234 * 119.99881 * 0.39389 * 25 24 23 27 27 C 1.38240 * 119.99839 * 359.85359 * 26 25 24 28 28 C 1.38235 * 120.00082 * 11.64687 * 23 9 7 29 29 H 0.97005 * 119.99714 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99806 * 355.38326 * 13 11 9 31 31 H 1.07996 * 120.49641 * 0.02562 * 15 14 13 32 32 H 1.09004 * 115.54620 * 154.34825 * 18 17 16 33 33 H 1.08994 * 117.49680 * 359.97438 * 19 18 17 34 34 H 1.08999 * 117.49869 * 145.02024 * 19 18 17 35 35 H 1.09003 * 117.50222 * 214.97773 * 20 18 17 36 36 H 1.08996 * 117.50159 * 0.02562 * 20 18 17 37 37 H 1.08005 * 120.49413 * 179.97438 * 22 21 17 38 38 H 1.08001 * 119.99783 * 359.97438 * 24 23 9 39 39 H 1.07995 * 119.99855 * 180.22563 * 25 24 23 40 40 H 1.07995 * 120.00180 * 179.83586 * 26 25 24 41 41 H 1.08001 * 120.00030 * 179.97438 * 27 26 25 42 42 H 1.07998 * 119.99980 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0786 -1.1974 0.1120 9 6 1.2598 -2.4940 -0.1642 10 1 1.9527 -3.3270 -0.0453 11 6 0.1775 -2.5879 0.8802 12 8 -0.9832 -2.6889 0.5434 13 7 0.4995 -2.5596 2.1887 14 6 -0.5105 -2.5491 3.1578 15 6 -0.3477 -1.8515 4.3517 16 7 -1.3277 -1.8625 5.2400 17 6 -2.4410 -2.5298 5.0110 18 6 -3.5278 -2.5194 6.0549 19 6 -3.3599 -1.5666 7.2402 20 6 -3.1835 -3.0735 7.4388 21 7 -2.6313 -3.2063 3.8961 22 6 -1.7016 -3.2412 2.9559 23 6 0.6397 -2.5482 -1.5366 24 6 -0.2849 -3.5304 -1.8389 25 6 -0.8568 -3.5778 -3.0966 26 6 -0.4979 -2.6480 -4.0545 27 6 0.4305 -1.6689 -3.7537 28 6 0.9995 -1.6192 -2.4949 29 1 -0.4850 0.8401 0.0004 30 1 1.4310 -2.5464 2.4588 31 1 0.5635 -1.3060 4.5479 32 1 -4.5386 -2.6870 5.6829 33 1 -2.4631 -0.9477 7.2652 34 1 -4.2602 -1.1072 7.6481 35 1 -3.9679 -3.6052 7.9775 36 1 -2.1708 -3.4452 7.5945 37 1 -1.8642 -3.7980 2.0448 38 1 -0.5625 -4.2591 -1.0916 39 1 -1.5818 -4.3429 -3.3316 40 1 -0.9427 -2.6866 -5.0378 41 1 0.7112 -0.9427 -4.5022 42 1 1.7247 -0.8543 -2.2599 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361744355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:30 Heat of formation + Delta-G solvation = 68.516412 kcal Electronic energy + Delta-G solvation = -26672.337721 eV Core-core repulsion = 23004.390142 eV Total energy + Delta-G solvation = -3667.947579 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.90795 -39.23118 -37.82061 -36.81423 -34.26234 -33.85023 -33.26463 -31.06355 -29.84311 -29.80000 -27.38041 -24.89005 -24.30975 -23.73995 -22.32941 -21.48660 -21.31902 -20.56903 -19.57939 -17.73795 -17.03962 -16.84808 -16.47266 -15.70389 -15.22689 -15.15686 -14.99473 -14.45072 -14.17249 -13.87373 -13.76896 -13.53894 -13.19151 -12.77375 -12.43275 -12.31925 -12.28232 -12.04025 -11.53895 -11.48090 -11.11191 -11.07430 -10.96016 -10.85051 -10.62838 -10.44525 -10.41727 -10.17375 -9.98553 -9.82351 -9.56040 -9.01021 -8.84461 -8.50849 -7.85698 -7.73822 -7.56939 -6.33770 -4.48156 1.25687 1.46027 2.38076 2.45488 3.09695 3.21438 3.22227 3.60879 3.67536 3.95910 4.13356 4.18358 4.31363 4.52501 4.84107 4.91849 4.94549 4.97583 5.08748 5.20681 5.38178 5.56570 5.62817 5.74264 5.80920 5.84498 5.92654 6.06343 6.14504 6.21447 6.28833 6.33548 6.51249 6.58614 6.61145 6.69691 6.96342 7.05654 7.10526 7.39610 7.44269 7.49269 7.53389 7.60338 7.97401 8.09796 8.17708 8.46558 8.56958 9.19377 9.26778 10.68395 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.003918 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.021659 B = 7145.499259 C = 8423.849365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.843 5.843 2 C 0.076 3.924 3 Si 0.886 3.114 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.283 1.283 7 C -0.546 4.546 8 H 0.072 0.928 9 C 0.061 3.939 10 H 0.064 0.936 11 C 0.555 3.445 12 O -0.524 6.524 13 N -0.664 5.664 14 C 0.082 3.918 15 C 0.109 3.891 16 N -0.500 5.500 17 C 0.299 3.701 18 C -0.089 4.089 19 C -0.158 4.158 20 C -0.160 4.160 21 N -0.497 5.497 22 C 0.139 3.861 23 C -0.021 4.021 24 C -0.101 4.101 25 C -0.141 4.141 26 C -0.142 4.142 27 C -0.145 4.145 28 C -0.072 4.072 29 H 0.268 0.732 30 H 0.411 0.589 31 H 0.166 0.834 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.180 0.820 38 H 0.108 0.892 39 H 0.104 0.896 40 H 0.102 0.898 41 H 0.104 0.896 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.158 -5.205 6.673 8.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.475 5.475 2 C -0.132 4.132 3 Si 0.713 3.287 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.209 1.209 7 C -0.583 4.583 8 H 0.090 0.910 9 C 0.039 3.961 10 H 0.082 0.918 11 C 0.346 3.654 12 O -0.398 6.398 13 N -0.308 5.308 14 C -0.020 4.020 15 C -0.061 4.061 16 N -0.213 5.213 17 C 0.032 3.968 18 C -0.109 4.109 19 C -0.195 4.195 20 C -0.199 4.199 21 N -0.210 5.210 22 C -0.030 4.030 23 C -0.022 4.022 24 C -0.119 4.119 25 C -0.159 4.159 26 C -0.160 4.160 27 C -0.163 4.163 28 C -0.090 4.090 29 H 0.078 0.922 30 H 0.247 0.753 31 H 0.183 0.817 32 H 0.142 0.858 33 H 0.127 0.873 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.112 0.888 37 H 0.197 0.803 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.122 0.878 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.848 -5.126 6.977 8.853 hybrid contribution 1.355 1.387 -0.706 2.064 sum -0.493 -3.739 6.271 7.317 Atomic orbital electron populations 1.69975 1.05599 1.27415 1.44550 1.25067 0.94822 0.99463 0.93867 0.86603 0.80363 0.83616 0.78099 1.19258 1.20541 1.20874 1.20756 0.93813 0.88670 1.55054 0.91017 1.17865 0.91895 0.98780 0.87528 0.91839 1.21465 0.91235 0.71095 0.81620 1.90537 1.21335 1.47608 1.80285 1.43553 1.07896 1.74092 1.05252 1.19677 0.93472 0.96935 0.91964 1.22996 0.98176 0.94910 0.89971 1.67913 1.01273 1.19213 1.32912 1.21816 0.91529 0.91914 0.91564 1.20476 0.96403 1.07299 0.86743 1.22986 1.03997 0.92844 0.99706 1.22947 1.02905 0.97013 0.97001 1.68082 1.31973 1.19414 1.01568 1.23499 0.88146 0.94129 0.97215 1.19808 0.94524 0.92703 0.95211 1.20964 0.96720 0.98989 0.95272 1.20853 1.01013 0.99711 0.94330 1.20825 0.99668 0.96984 0.98543 1.21031 0.99065 0.98918 0.97333 1.21207 0.98917 0.97437 0.91407 0.92193 0.75339 0.81701 0.85814 0.87322 0.88555 0.88339 0.88756 0.80322 0.87438 0.87833 0.87975 0.87823 0.85275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -21.97 11.11 55.43 0.62 -21.36 16 2 C 0.08 1.82 3.85 -17.82 -0.07 1.75 16 3 Si 0.89 18.94 29.54 -169.99 -5.02 13.92 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 7 C -0.55 -12.26 7.17 -34.44 -0.25 -12.51 16 8 H 0.07 1.56 7.82 -52.49 -0.41 1.15 16 9 C 0.06 1.30 2.77 -94.08 -0.26 1.04 16 10 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 11 C 0.55 11.93 5.08 -10.98 -0.06 11.88 16 12 O -0.52 -12.68 11.47 5.55 0.06 -12.61 16 13 N -0.66 -12.13 5.24 -9.68 -0.05 -12.19 16 14 C 0.08 1.49 6.35 -83.40 -0.53 0.96 16 15 C 0.11 1.82 11.26 -16.99 -0.19 1.63 16 16 N -0.50 -8.50 9.33 -10.58 -0.10 -8.60 16 17 C 0.30 5.14 7.31 -157.19 -1.15 4.00 16 18 C -0.09 -1.21 6.23 -91.78 -0.57 -1.78 16 19 C -0.16 -1.79 10.01 -26.73 -0.27 -2.05 16 20 C -0.16 -1.75 10.23 -26.73 -0.27 -2.02 16 21 N -0.50 -9.32 10.32 -10.58 -0.11 -9.43 16 22 C 0.14 2.68 9.98 -17.00 -0.17 2.51 16 23 C -0.02 -0.48 4.67 -104.63 -0.49 -0.96 16 24 C -0.10 -2.12 8.22 -39.58 -0.33 -2.45 16 25 C -0.14 -2.71 10.05 -39.58 -0.40 -3.10 16 26 C -0.14 -2.65 10.05 -39.58 -0.40 -3.05 16 27 C -0.15 -2.87 10.05 -39.58 -0.40 -3.27 16 28 C -0.07 -1.58 8.49 -39.58 -0.34 -1.91 16 29 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.41 6.39 8.78 -40.82 -0.36 6.03 16 31 H 0.17 2.32 8.06 -52.49 -0.42 1.90 16 32 H 0.12 1.57 8.14 -51.93 -0.42 1.15 16 33 H 0.11 1.36 7.53 -51.93 -0.39 0.97 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.18 3.55 6.30 -52.48 -0.33 3.22 16 38 H 0.11 2.18 7.13 -52.49 -0.37 1.80 16 39 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 40 H 0.10 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.10 1.79 8.06 -52.49 -0.42 1.37 16 42 H 0.13 2.92 5.97 -52.49 -0.31 2.60 16 LS Contribution 354.90 15.07 5.35 5.35 Total: -1.00 -28.77 354.90 -10.50 -39.27 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -5.12 Total: 14.99 kcal Atomic # 6 Polarization: -3.22 SS G_CDS: -6.13 Total: -9.35 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.36 Total: -51.57 kcal Atomic # 8 Polarization: -12.68 SS G_CDS: 0.06 Total: -12.61 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -5.02 Total: 13.92 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.77 -10.50 -39.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361744355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.786 kcal (2) G-P(sol) polarization free energy of solvation -28.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds