Wall clock time and date at job start Tue Mar 31 2020 14:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 120.00217 * 2 1 4 4 H 1.48497 * 109.47535 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46847 * 300.00231 * 3 2 1 6 6 H 1.48499 * 109.47249 * 59.99985 * 3 2 1 7 7 C 1.37875 * 120.00198 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00145 * 186.91261 * 7 2 1 9 9 C 1.50706 * 119.99835 * 7.17871 * 7 2 1 10 10 H 1.09001 * 109.46785 * 185.32506 * 9 7 2 11 11 C 1.50700 * 109.47152 * 305.32219 * 9 7 2 12 12 O 1.21287 * 120.00232 * 119.99753 * 11 9 7 13 13 N 1.34780 * 119.99961 * 299.99770 * 11 9 7 14 14 C 1.39975 * 119.99878 * 175.37333 * 13 11 9 15 15 C 1.39232 * 120.87001 * 214.25875 * 14 13 11 16 16 N 1.32275 * 119.01441 * 179.76653 * 15 14 13 17 17 C 1.31800 * 120.88914 * 0.52618 * 16 15 14 18 18 C 1.50701 * 119.03309 * 179.70209 * 17 16 15 19 19 C 1.52996 * 117.50179 * 8.64613 * 18 17 16 20 20 C 1.52994 * 117.50088 * 300.01634 * 18 17 16 21 21 N 1.31795 * 121.92554 * 359.72577 * 17 16 15 22 22 C 1.32262 * 120.89155 * 0.02562 * 21 17 16 23 23 C 1.50693 * 109.47023 * 65.32296 * 9 7 2 24 24 C 1.38237 * 120.00085 * 191.38004 * 23 9 7 25 25 C 1.38242 * 120.00113 * 179.81036 * 24 23 9 26 26 C 1.38234 * 119.99881 * 0.39389 * 25 24 23 27 27 C 1.38240 * 119.99839 * 359.85359 * 26 25 24 28 28 C 1.38235 * 120.00082 * 11.64687 * 23 9 7 29 29 H 0.97005 * 119.99714 * 359.97438 * 1 2 3 30 30 H 0.96998 * 119.99806 * 355.38326 * 13 11 9 31 31 H 1.07996 * 120.49641 * 0.02562 * 15 14 13 32 32 H 1.09004 * 115.54620 * 154.34825 * 18 17 16 33 33 H 1.08994 * 117.49680 * 359.97438 * 19 18 17 34 34 H 1.08999 * 117.49869 * 145.02024 * 19 18 17 35 35 H 1.09003 * 117.50222 * 214.97773 * 20 18 17 36 36 H 1.08996 * 117.50159 * 0.02562 * 20 18 17 37 37 H 1.08005 * 120.49413 * 179.97438 * 22 21 17 38 38 H 1.08001 * 119.99783 * 359.97438 * 24 23 9 39 39 H 1.07995 * 119.99855 * 180.22563 * 25 24 23 40 40 H 1.07995 * 120.00180 * 179.83586 * 26 25 24 41 41 H 1.08001 * 120.00030 * 179.97438 * 27 26 25 42 42 H 1.07998 * 119.99980 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0786 -1.1974 0.1120 9 6 1.2598 -2.4940 -0.1642 10 1 1.9527 -3.3270 -0.0453 11 6 0.1775 -2.5879 0.8802 12 8 -0.9832 -2.6889 0.5434 13 7 0.4995 -2.5596 2.1887 14 6 -0.5105 -2.5491 3.1578 15 6 -0.3477 -1.8515 4.3517 16 7 -1.3277 -1.8625 5.2400 17 6 -2.4410 -2.5298 5.0110 18 6 -3.5278 -2.5194 6.0549 19 6 -3.3599 -1.5666 7.2402 20 6 -3.1835 -3.0735 7.4388 21 7 -2.6313 -3.2063 3.8961 22 6 -1.7016 -3.2412 2.9559 23 6 0.6397 -2.5482 -1.5366 24 6 -0.2849 -3.5304 -1.8389 25 6 -0.8568 -3.5778 -3.0966 26 6 -0.4979 -2.6480 -4.0545 27 6 0.4305 -1.6689 -3.7537 28 6 0.9995 -1.6192 -2.4949 29 1 -0.4850 0.8401 0.0004 30 1 1.4310 -2.5464 2.4588 31 1 0.5635 -1.3060 4.5479 32 1 -4.5386 -2.6870 5.6829 33 1 -2.4631 -0.9477 7.2652 34 1 -4.2602 -1.1072 7.6481 35 1 -3.9679 -3.6052 7.9775 36 1 -2.1708 -3.4452 7.5945 37 1 -1.8642 -3.7980 2.0448 38 1 -0.5625 -4.2591 -1.0916 39 1 -1.5818 -4.3429 -3.3316 40 1 -0.9427 -2.6866 -5.0378 41 1 0.7112 -0.9427 -4.5022 42 1 1.7247 -0.8543 -2.2599 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361744355.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:29 Heat of formation + Delta-G solvation = 53.716847 kcal Electronic energy + Delta-G solvation = -26672.979479 eV Core-core repulsion = 23004.390142 eV Total energy + Delta-G solvation = -3668.589337 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.30283 -40.80542 -39.32572 -37.90637 -35.76671 -35.58230 -34.66428 -32.76908 -31.40485 -31.21710 -28.99388 -26.37554 -25.79718 -25.22271 -23.19862 -23.01536 -22.72098 -21.96538 -21.17534 -19.26613 -18.48591 -18.33132 -17.86610 -17.22400 -16.90343 -16.77424 -16.15065 -15.83860 -15.70069 -15.40325 -15.13775 -14.98646 -14.58753 -14.41984 -14.07484 -13.97002 -13.81274 -13.18968 -13.07667 -12.81701 -12.55409 -12.52963 -12.36640 -12.27433 -12.15612 -11.83414 -11.78666 -11.49937 -11.37696 -11.23019 -11.17241 -10.75146 -10.41420 -10.12659 -9.43250 -9.20980 -9.12679 -8.16787 -6.32650 -0.12255 0.04115 0.82385 0.87806 1.38110 1.46577 1.53357 2.06277 2.31848 2.41348 2.67835 2.92840 3.03127 3.14473 3.27850 3.30423 3.57143 3.93865 3.94919 4.07741 4.16936 4.29662 4.33248 4.39456 4.46887 4.59844 4.68346 4.80395 4.84748 4.94047 4.95725 5.01225 5.10565 5.17863 5.24685 5.34598 5.40560 5.49730 5.64672 5.68165 5.85586 5.87755 5.92607 6.02977 6.35532 6.48443 6.63004 6.83158 7.08457 7.37359 7.65561 8.83734 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014827 B = 0.003918 C = 0.003323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1888.021659 B = 7145.499259 C = 8423.849365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.045 3.955 3 Si 0.936 3.064 4 H -0.254 1.254 5 H -0.290 1.290 6 H -0.291 1.291 7 C -0.533 4.533 8 H 0.079 0.921 9 C 0.052 3.948 10 H 0.082 0.918 11 C 0.555 3.445 12 O -0.556 6.556 13 N -0.653 5.653 14 C 0.064 3.936 15 C 0.118 3.882 16 N -0.502 5.502 17 C 0.296 3.704 18 C -0.119 4.119 19 C -0.146 4.146 20 C -0.140 4.140 21 N -0.516 5.516 22 C 0.127 3.873 23 C -0.041 4.041 24 C -0.117 4.117 25 C -0.144 4.144 26 C -0.141 4.141 27 C -0.151 4.151 28 C -0.095 4.095 29 H 0.255 0.745 30 H 0.423 0.577 31 H 0.194 0.806 32 H 0.130 0.870 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.087 0.913 37 H 0.165 0.835 38 H 0.105 0.895 39 H 0.130 0.870 40 H 0.137 0.863 41 H 0.126 0.874 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.010 -5.175 7.452 9.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.160 4.160 3 Si 0.762 3.238 4 H -0.178 1.178 5 H -0.217 1.217 6 H -0.217 1.217 7 C -0.570 4.570 8 H 0.097 0.903 9 C 0.031 3.969 10 H 0.100 0.900 11 C 0.347 3.653 12 O -0.433 6.433 13 N -0.299 5.299 14 C -0.037 4.037 15 C -0.051 4.051 16 N -0.216 5.216 17 C 0.029 3.971 18 C -0.139 4.139 19 C -0.184 4.184 20 C -0.178 4.178 21 N -0.229 5.229 22 C -0.042 4.042 23 C -0.042 4.042 24 C -0.135 4.135 25 C -0.162 4.162 26 C -0.159 4.159 27 C -0.169 4.169 28 C -0.113 4.113 29 H 0.065 0.935 30 H 0.261 0.739 31 H 0.211 0.789 32 H 0.148 0.852 33 H 0.114 0.886 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.105 0.895 37 H 0.182 0.818 38 H 0.123 0.877 39 H 0.148 0.852 40 H 0.155 0.845 41 H 0.144 0.856 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.634 -5.112 7.781 9.452 hybrid contribution 1.288 1.322 -0.916 2.061 sum -0.346 -3.789 6.865 7.849 Atomic orbital electron populations 1.70140 1.06962 1.26847 1.47150 1.25531 0.94948 1.01658 0.93819 0.85838 0.80162 0.80792 0.76990 1.17795 1.21653 1.21722 1.20977 0.94081 0.88971 1.52995 0.90270 1.17991 0.92240 0.99012 0.87663 0.90019 1.21424 0.90695 0.70688 0.82512 1.90514 1.22475 1.49262 1.81022 1.43295 1.08616 1.73530 1.04416 1.19711 0.93341 0.98011 0.92637 1.23456 0.98928 0.93805 0.88953 1.68057 1.01416 1.19300 1.32791 1.22589 0.92312 0.90567 0.91662 1.20677 0.95594 1.10562 0.87106 1.23066 1.04591 0.93052 0.97658 1.23050 1.03443 0.96981 0.94360 1.68114 1.32131 1.20460 1.02233 1.23369 0.88986 0.94668 0.97158 1.19939 0.95405 0.93428 0.95474 1.21067 0.97119 0.99078 0.96250 1.21227 1.00938 1.00383 0.93686 1.21214 0.98830 0.95897 0.99913 1.21342 0.98896 0.99655 0.97014 1.21220 0.99790 0.97600 0.92703 0.93516 0.73898 0.78948 0.85224 0.88568 0.85964 0.85484 0.89453 0.81783 0.87722 0.85164 0.84482 0.85586 0.86668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -46.52 11.11 21.45 0.24 -46.28 16 2 C 0.05 2.14 3.85 84.66 0.33 2.47 16 3 Si 0.94 38.87 29.54 68.60 2.03 40.89 16 4 H -0.25 -9.88 7.11 99.48 0.71 -9.18 16 5 H -0.29 -12.47 7.11 99.48 0.71 -11.76 16 6 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.53 -23.78 7.17 25.60 0.18 -23.60 16 8 H 0.08 3.36 7.82 -2.91 -0.02 3.34 16 9 C 0.05 2.24 2.77 -13.03 -0.04 2.21 16 10 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 11 C 0.56 24.33 5.08 87.66 0.44 24.78 16 12 O -0.56 -27.81 11.47 -3.05 -0.04 -27.85 16 13 N -0.65 -24.05 5.24 -302.91 -1.59 -25.64 16 14 C 0.06 2.38 6.35 38.32 0.24 2.62 16 15 C 0.12 3.87 11.26 84.87 0.96 4.82 16 16 N -0.50 -16.69 9.33 -187.38 -1.75 -18.44 16 17 C 0.30 10.06 7.31 138.75 1.01 11.08 16 18 C -0.12 -3.08 6.23 -11.54 -0.07 -3.15 16 19 C -0.15 -2.97 10.01 30.60 0.31 -2.66 16 20 C -0.14 -2.70 10.23 30.59 0.31 -2.39 16 21 N -0.52 -19.67 10.32 -187.38 -1.93 -21.61 16 22 C 0.13 5.03 9.98 84.87 0.85 5.87 16 23 C -0.04 -1.85 4.67 -19.87 -0.09 -1.95 16 24 C -0.12 -4.93 8.22 22.27 0.18 -4.74 16 25 C -0.14 -5.36 10.05 22.27 0.22 -5.14 16 26 C -0.14 -4.96 10.05 22.27 0.22 -4.74 16 27 C -0.15 -5.80 10.05 22.27 0.22 -5.57 16 28 C -0.10 -4.19 8.49 22.27 0.19 -4.00 16 29 H 0.26 13.76 8.31 -92.70 -0.77 12.99 16 30 H 0.42 12.97 8.78 -92.71 -0.81 12.16 16 31 H 0.19 5.07 8.06 -2.91 -0.02 5.05 16 32 H 0.13 3.14 8.14 -2.39 -0.02 3.12 16 33 H 0.10 2.23 7.53 -2.39 -0.02 2.21 16 34 H 0.12 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.13 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.17 6.91 6.30 -2.91 -0.02 6.90 16 38 H 0.10 4.35 7.13 -2.91 -0.02 4.33 16 39 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 40 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 41 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 42 H 0.12 5.27 5.97 -2.91 -0.02 5.25 16 Total: -1.00 -62.58 354.90 2.68 -59.90 By element: Atomic # 1 Polarization: 42.88 SS G_CDS: 0.25 Total: 43.12 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: 5.48 Total: -4.10 kcal Atomic # 7 Polarization: -106.93 SS G_CDS: -5.03 Total: -111.97 kcal Atomic # 8 Polarization: -27.81 SS G_CDS: -0.04 Total: -27.85 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 2.03 Total: 40.89 kcal Total: -62.58 2.68 -59.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361744355.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.612 kcal (2) G-P(sol) polarization free energy of solvation -62.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds