Wall clock time and date at job start Tue Mar 31 2020 15:00:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34428 * 125.80907 * 2 1 4 4 H 0.97002 * 125.38795 * 359.97438 * 3 2 1 5 5 C 1.37702 * 109.22348 * 180.02562 * 3 2 1 6 6 C 1.43201 * 125.84320 * 180.02562 * 5 3 2 7 7 N 4.71947 * 151.34843 * 359.97438 * 2 1 3 8 8 C 1.36361 * 108.31341 * 359.97438 * 5 3 2 9 9 C 1.38129 * 125.80553 * 180.34292 * 2 1 3 10 10 C 1.47377 * 126.46747 * 359.97438 * 9 2 1 11 11 O 1.21609 * 120.00107 * 0.18317 * 10 9 2 12 12 N 1.34776 * 119.99644 * 180.19222 * 10 9 2 13 13 C 1.46508 * 119.99894 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47212 * 34.99589 * 13 12 10 15 15 C 1.52999 * 109.47137 * 154.99498 * 13 12 10 16 16 C 1.50695 * 109.47263 * 294.99824 * 15 13 12 17 17 H 1.08002 * 120.00258 * 359.97438 * 16 15 13 18 18 C 1.37874 * 120.00095 * 180.02562 * 16 15 13 19 19 N 1.31519 * 120.00192 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 120.00127 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 89.99894 * 20 18 16 22 22 H 1.48491 * 109.47471 * 210.00517 * 20 18 16 23 23 H 1.48508 * 109.46985 * 330.00401 * 20 18 16 24 24 C 1.50697 * 109.46967 * 274.99473 * 13 12 10 25 25 C 1.38233 * 120.00185 * 319.72962 * 24 13 12 26 26 C 1.38236 * 120.00334 * 179.78701 * 25 24 13 27 27 C 1.38233 * 119.99739 * 0.43981 * 26 25 24 28 28 C 1.38242 * 120.00190 * 359.81014 * 27 26 25 29 29 C 1.38234 * 120.00109 * 139.99760 * 24 13 12 30 30 H 1.08997 * 109.46896 * 89.97219 * 1 2 3 31 31 H 1.08998 * 109.46874 * 209.97094 * 1 2 3 32 32 H 1.08999 * 109.47037 * 329.97694 * 1 2 3 33 33 H 1.08002 * 126.48975 * 179.97438 * 8 5 3 34 34 H 0.97000 * 120.00667 * 359.97438 * 12 10 9 35 35 H 1.09001 * 109.47313 * 54.99983 * 15 13 12 36 36 H 1.09004 * 109.46995 * 174.99812 * 15 13 12 37 37 H 0.96998 * 119.99807 * 180.02562 * 19 18 16 38 38 H 1.08003 * 119.99810 * 359.97438 * 25 24 13 39 39 H 1.07999 * 120.00440 * 180.26799 * 26 25 24 40 40 H 1.07999 * 120.00117 * 179.83944 * 27 26 25 41 41 H 1.07992 * 120.00155 * 179.97438 * 28 27 26 42 42 H 1.08004 * 119.99551 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2936 1.0902 0.0000 4 1 1.9809 2.0084 -0.0004 5 6 3.6133 0.6971 -0.0006 6 6 4.7483 1.5703 -0.0002 7 7 5.6486 2.2629 -0.0010 8 6 3.6544 -0.6659 -0.0004 9 6 2.3151 -1.1202 -0.0067 10 6 1.8664 -2.5240 -0.0146 11 8 0.6781 -2.7825 -0.0190 12 7 2.7730 -3.5212 -0.0167 13 6 2.3270 -4.9167 -0.0240 14 1 1.4160 -5.0039 -0.6160 15 6 3.4185 -5.7978 -0.6348 16 6 3.6067 -5.4319 -2.0845 17 1 3.0074 -4.6495 -2.5262 18 6 4.5431 -6.0968 -2.8474 19 7 4.7077 -5.7771 -4.1125 20 14 5.5792 -7.4506 -2.0838 21 1 4.8868 -8.7544 -2.2449 22 1 6.9000 -7.5046 -2.7604 23 1 5.7745 -7.1691 -0.6388 24 6 2.0527 -5.3637 1.3888 25 6 2.8972 -4.9767 2.4125 26 6 2.6431 -5.3831 3.7091 27 6 1.5497 -6.1840 3.9807 28 6 0.7080 -6.5754 2.9562 29 6 0.9598 -6.1654 1.6603 30 1 -0.3633 0.0005 -1.0277 31 1 -0.3633 -0.8902 0.5134 32 1 -0.3633 0.8898 0.5142 33 1 4.5417 -1.2817 -0.0011 34 1 3.7209 -3.3151 -0.0134 35 1 4.3538 -5.6433 -0.0968 36 1 3.1248 -6.8448 -0.5595 37 1 5.3663 -6.2451 -4.6492 38 1 3.7538 -4.3543 2.1997 39 1 3.3005 -5.0772 4.5096 40 1 1.3526 -6.5037 4.9933 41 1 -0.1460 -7.2014 3.1683 42 1 0.3022 -6.4709 0.8598 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362189836.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:16 Heat of formation + Delta-G solvation = 54.863246 kcal Electronic energy + Delta-G solvation = -26179.024573 eV Core-core repulsion = 22510.484948 eV Total energy + Delta-G solvation = -3668.539625 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67922 -39.47182 -38.19784 -36.62435 -35.22454 -32.73966 -32.09980 -31.68153 -30.74828 -30.45056 -29.25547 -27.22066 -25.17243 -23.00771 -22.26993 -21.78226 -21.73075 -19.83957 -19.55800 -19.21234 -17.11207 -16.40564 -16.19946 -15.72131 -15.44017 -15.20450 -14.88256 -14.30457 -14.15697 -14.05245 -13.98229 -13.51808 -13.40587 -13.18187 -13.06846 -12.86443 -12.79192 -12.65168 -12.57194 -12.41224 -12.36652 -11.85334 -11.73973 -11.32161 -11.06486 -10.71197 -10.61879 -10.14331 -9.83319 -9.42903 -9.29365 -9.26593 -8.61591 -8.58125 -8.48060 -8.29438 -8.20626 -6.08788 -4.08357 1.22286 1.70192 1.73491 1.88251 2.09522 2.95449 3.24989 3.27502 3.36105 3.37999 3.67244 3.86965 3.97705 4.20392 4.40097 4.66535 4.91611 5.03884 5.19865 5.21421 5.25227 5.29462 5.36737 5.47417 5.53631 5.62003 5.82102 5.84435 5.86256 6.05495 6.09656 6.26601 6.33686 6.41966 6.46267 6.57153 6.76515 6.78847 6.85013 6.96118 6.99944 7.09113 7.27122 7.33182 7.38452 7.67424 8.17846 8.46431 8.82702 8.97904 9.52232 11.03917 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008060 B = 0.004771 C = 0.003561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3473.036300 B = 5867.674678 C = 7860.727510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.137 3.863 3 N -0.524 5.524 4 H 0.422 0.578 5 C 0.038 3.962 6 C 0.283 3.717 7 N -0.412 5.412 8 C -0.066 4.066 9 C -0.218 4.218 10 C 0.589 3.411 11 O -0.553 6.553 12 N -0.695 5.695 13 C 0.197 3.803 14 H 0.094 0.906 15 C -0.015 4.015 16 C -0.519 4.519 17 H 0.077 0.923 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.873 3.127 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C -0.075 4.075 25 C -0.108 4.108 26 C -0.125 4.125 27 C -0.134 4.134 28 C -0.123 4.123 29 C -0.107 4.107 30 H 0.085 0.915 31 H 0.109 0.891 32 H 0.065 0.935 33 H 0.159 0.841 34 H 0.401 0.599 35 H 0.023 0.977 36 H 0.029 0.971 37 H 0.263 0.737 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.247 8.931 13.456 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.014 3.986 3 N -0.120 5.120 4 H 0.260 0.740 5 C -0.073 4.073 6 C -0.032 4.032 7 N -0.089 5.089 8 C -0.095 4.095 9 C -0.227 4.227 10 C 0.376 3.624 11 O -0.433 6.433 12 N -0.343 5.343 13 C 0.092 3.908 14 H 0.112 0.888 15 C -0.052 4.052 16 C -0.557 4.557 17 H 0.095 0.905 18 C -0.131 4.131 19 N -0.536 5.536 20 Si 0.701 3.299 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.076 4.076 25 C -0.126 4.126 26 C -0.143 4.143 27 C -0.152 4.152 28 C -0.141 4.141 29 C -0.126 4.126 30 H 0.103 0.897 31 H 0.128 0.872 32 H 0.084 0.916 33 H 0.177 0.823 34 H 0.235 0.765 35 H 0.041 0.959 36 H 0.047 0.953 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.578 9.920 13.268 17.825 hybrid contribution 0.813 -0.472 0.181 0.957 sum -5.766 9.448 13.450 17.418 Atomic orbital electron populations 1.20676 0.85974 1.04612 1.04170 1.20850 0.93979 0.84700 0.99084 1.41490 1.04450 1.09064 1.57015 0.73967 1.15017 0.79902 0.90663 1.21670 1.24307 0.92840 0.92880 0.93147 1.81307 1.09431 1.07360 1.10831 1.21285 0.97648 0.91265 0.99260 1.19479 0.92406 0.93276 1.17546 1.17183 0.85700 0.83592 0.75889 1.90698 1.16309 1.84482 1.51770 1.45667 1.09581 1.05553 1.73465 1.19942 1.00484 0.80237 0.90130 0.88842 1.19881 0.93132 0.94977 0.97242 1.21018 1.21155 1.20954 0.92565 0.90464 1.24977 0.96754 0.96698 0.94627 1.69906 1.35033 1.41893 1.06778 0.86887 0.80060 0.82985 0.80001 1.20246 1.21431 1.18942 1.20578 0.94183 0.96282 0.96589 1.20938 0.99250 1.00006 0.92410 1.21050 0.97827 0.98898 0.96558 1.21011 0.95974 0.99548 0.98689 1.21054 0.99517 1.00475 0.93076 1.21041 0.97053 0.97858 0.96615 0.89675 0.87246 0.91644 0.82345 0.76474 0.95859 0.95276 0.92684 0.86442 0.86739 0.86865 0.86583 0.86008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 9.87 36.01 0.36 -0.52 16 2 C 0.14 1.48 7.21 -81.49 -0.59 0.89 16 3 N -0.52 -4.50 6.02 -6.59 -0.04 -4.54 16 4 H 0.42 2.18 8.96 -40.82 -0.37 1.82 16 5 C 0.04 0.40 6.90 -83.98 -0.58 -0.18 16 6 C 0.28 3.29 15.88 -22.48 -0.36 2.93 16 7 N -0.41 -5.60 18.54 41.83 0.78 -4.82 16 8 C -0.07 -0.79 10.24 -39.05 -0.40 -1.19 16 9 C -0.22 -2.94 6.13 -105.01 -0.64 -3.58 16 10 C 0.59 9.86 7.77 -12.54 -0.10 9.76 16 11 O -0.55 -10.47 14.46 5.27 0.08 -10.39 16 12 N -0.69 -11.82 4.03 -56.02 -0.23 -12.04 16 13 C 0.20 3.70 2.11 -69.08 -0.15 3.56 16 14 H 0.09 1.95 7.44 -51.93 -0.39 1.56 16 15 C -0.01 -0.32 3.56 -27.89 -0.10 -0.42 16 16 C -0.52 -13.57 9.39 -34.44 -0.32 -13.89 16 17 H 0.08 2.22 7.99 -52.49 -0.42 1.81 16 18 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -26.50 13.96 55.43 0.77 -25.72 16 20 Si 0.87 20.62 27.47 -169.99 -4.67 15.95 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 23 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 24 C -0.08 -1.27 4.91 -104.63 -0.51 -1.78 16 25 C -0.11 -1.65 9.32 -39.58 -0.37 -2.02 16 26 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 27 C -0.13 -1.74 10.05 -39.58 -0.40 -2.13 16 28 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 29 C -0.11 -1.69 9.67 -39.58 -0.38 -2.07 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.11 1.24 6.47 -51.93 -0.34 0.91 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.16 1.68 7.54 -52.49 -0.40 1.29 16 34 H 0.40 6.25 7.58 -40.82 -0.31 5.94 16 35 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 36 H 0.03 0.64 7.57 -51.93 -0.39 0.25 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.12 1.66 7.73 -52.48 -0.41 1.26 16 39 H 0.11 1.27 8.06 -52.49 -0.42 0.84 16 40 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 42 H 0.12 1.83 8.04 -52.48 -0.42 1.41 16 LS Contribution 369.09 15.07 5.56 5.56 Total: -1.00 -32.72 369.09 -8.27 -40.99 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -5.09 Total: 7.97 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -5.44 Total: -12.95 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 1.28 Total: -47.12 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.08 Total: -10.39 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.72 -8.27 -40.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362189836.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.854 kcal (2) G-P(sol) polarization free energy of solvation -32.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.991 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds