Wall clock time and date at job start Tue Mar 31 2020 15:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.34434 * 125.80758 * 2 1 4 4 H 0.97003 * 125.38373 * 359.97438 * 3 2 1 5 5 C 1.37701 * 109.22108 * 180.24754 * 3 2 1 6 6 C 1.43200 * 125.84209 * 179.77925 * 5 3 2 7 7 N 4.71960 * 151.34678 * 359.57574 * 2 1 3 8 8 C 1.36352 * 108.31762 * 359.75177 * 5 3 2 9 9 C 1.38129 * 125.80679 * 179.81422 * 2 1 3 10 10 C 1.47372 * 126.46801 * 0.02644 * 9 2 1 11 11 O 1.21613 * 120.00005 * 359.70644 * 10 9 2 12 12 N 1.34777 * 120.00032 * 179.71141 * 10 9 2 13 13 C 1.46498 * 119.99828 * 180.27569 * 12 10 9 14 14 H 1.08995 * 109.47013 * 324.72129 * 13 12 10 15 15 C 1.53004 * 109.47065 * 204.72115 * 13 12 10 16 16 C 1.50702 * 109.47006 * 64.99799 * 15 13 12 17 17 H 1.07997 * 119.99830 * 0.02562 * 16 15 13 18 18 C 1.37880 * 120.00036 * 180.02562 * 16 15 13 19 19 N 1.31513 * 119.99773 * 179.97438 * 18 16 15 20 20 Si 1.86793 * 119.99799 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47055 * 90.00051 * 20 18 16 22 22 H 1.48493 * 109.47136 * 209.99925 * 20 18 16 23 23 H 1.48498 * 109.47422 * 330.00292 * 20 18 16 24 24 C 1.50705 * 109.47438 * 84.72236 * 13 12 10 25 25 C 1.38236 * 119.99603 * 39.72326 * 24 13 12 26 26 C 1.38237 * 119.99455 * 179.80932 * 25 24 13 27 27 C 1.38236 * 120.00103 * 0.40314 * 26 25 24 28 28 C 1.38237 * 119.99816 * 359.85226 * 27 26 25 29 29 C 1.38233 * 119.99669 * 219.99795 * 24 13 12 30 30 H 1.08993 * 109.47314 * 270.18359 * 1 2 3 31 31 H 1.09000 * 109.46652 * 30.18631 * 1 2 3 32 32 H 1.08997 * 109.46813 * 150.18094 * 1 2 3 33 33 H 1.08002 * 126.49727 * 179.97438 * 8 5 3 34 34 H 0.97001 * 119.99727 * 359.97438 * 12 10 9 35 35 H 1.08993 * 109.47108 * 184.99578 * 15 13 12 36 36 H 1.08998 * 109.47048 * 305.00090 * 15 13 12 37 37 H 0.97001 * 119.99519 * 180.02562 * 19 18 16 38 38 H 1.07997 * 120.00182 * 0.02562 * 25 24 13 39 39 H 1.07998 * 119.99557 * 180.22830 * 26 25 24 40 40 H 1.07999 * 120.00211 * 179.82978 * 27 26 25 41 41 H 1.08002 * 119.99462 * 179.97438 * 28 27 26 42 42 H 1.07990 * 120.00363 * 359.97438 * 29 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2935 1.0902 0.0000 4 1 1.9808 2.0085 -0.0004 5 6 3.6132 0.6972 -0.0056 6 6 4.7482 1.5703 -0.0119 7 7 5.6486 2.2630 -0.0168 8 6 3.6545 -0.6657 -0.0036 9 6 2.3152 -1.1202 0.0036 10 6 1.8665 -2.5240 0.0076 11 8 0.6782 -2.7825 0.0134 12 7 2.7731 -3.5212 0.0051 13 6 2.3270 -4.9166 0.0029 14 1 1.4178 -5.0083 0.5971 15 6 3.4203 -5.8025 0.6037 16 6 3.6130 -5.4477 2.0556 17 1 3.0151 -4.6686 2.5050 18 6 4.5526 -6.1177 2.8102 19 7 4.7210 -5.8076 4.0771 20 14 5.5871 -7.4646 2.0327 21 1 6.8263 -6.8729 1.4673 22 1 5.9451 -8.4714 3.0638 23 1 4.8125 -8.1203 0.9486 24 6 2.0483 -5.3529 -1.4124 25 6 2.8833 -4.9487 -2.4373 26 6 2.6299 -5.3521 -3.7350 27 6 1.5368 -6.1527 -4.0089 28 6 0.6989 -6.5525 -2.9847 29 6 0.9545 -6.1524 -1.6865 30 1 -0.3633 0.0033 1.0276 31 1 -0.3632 0.8883 -0.5167 32 1 -0.3633 -0.8916 -0.5110 33 1 4.5417 -1.2816 -0.0072 34 1 3.7209 -3.3150 0.0002 35 1 3.1263 -6.8488 0.5213 36 1 4.3539 -5.6438 0.0639 37 1 5.3823 -6.2787 4.6079 38 1 3.7356 -4.3207 -2.2236 39 1 3.2844 -5.0394 -4.5351 40 1 1.3373 -6.4656 -5.0232 41 1 -0.1554 -7.1777 -3.1989 42 1 0.2999 -6.4648 -0.8864 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362189841.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:19 Heat of formation + Delta-G solvation = 54.912745 kcal Electronic energy + Delta-G solvation = -26180.928515 eV Core-core repulsion = 22512.391036 eV Total energy + Delta-G solvation = -3668.537479 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.68021 -39.47392 -38.19672 -36.62305 -35.22500 -32.74059 -32.10018 -31.68240 -30.74889 -30.44906 -29.25808 -27.22201 -25.17222 -23.00931 -22.26846 -21.78267 -21.73243 -19.83922 -19.55904 -19.21402 -17.11145 -16.40577 -16.20206 -15.72117 -15.44112 -15.20359 -14.88387 -14.29884 -14.15807 -14.05920 -13.98399 -13.51929 -13.40805 -13.18999 -13.06773 -12.86624 -12.79248 -12.64939 -12.53404 -12.41543 -12.35762 -11.91298 -11.81148 -11.25638 -11.05724 -10.73394 -10.48732 -10.21174 -9.85693 -9.43266 -9.28742 -9.26709 -8.61687 -8.58189 -8.48061 -8.29541 -8.20608 -6.08772 -4.08278 1.22151 1.70222 1.73474 1.88123 2.09333 2.95305 3.24800 3.26739 3.36181 3.38978 3.67137 3.86765 3.97592 4.20290 4.40212 4.66434 4.91549 5.03737 5.19841 5.21354 5.25295 5.29410 5.36637 5.47401 5.53467 5.61869 5.81997 5.84335 5.86261 6.05458 6.09568 6.26438 6.33677 6.41835 6.45828 6.57040 6.76707 6.78846 6.86103 6.95502 6.99864 7.08790 7.26987 7.33150 7.38852 7.67491 8.17663 8.46508 8.82603 8.98011 9.52273 11.03960 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008065 B = 0.004769 C = 0.003562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3470.808407 B = 5869.522825 C = 7857.960131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.137 3.863 3 N -0.525 5.525 4 H 0.422 0.578 5 C 0.038 3.962 6 C 0.283 3.717 7 N -0.412 5.412 8 C -0.066 4.066 9 C -0.218 4.218 10 C 0.589 3.411 11 O -0.553 6.553 12 N -0.695 5.695 13 C 0.197 3.803 14 H 0.094 0.906 15 C -0.014 4.014 16 C -0.519 4.519 17 H 0.077 0.923 18 C 0.071 3.929 19 N -0.898 5.898 20 Si 0.873 3.127 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.265 1.265 24 C -0.075 4.075 25 C -0.108 4.108 26 C -0.125 4.125 27 C -0.134 4.134 28 C -0.123 4.123 29 C -0.107 4.107 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.159 0.841 34 H 0.401 0.599 35 H 0.034 0.966 36 H 0.019 0.981 37 H 0.263 0.737 38 H 0.118 0.882 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.329 9.001 -13.386 17.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.014 3.986 3 N -0.120 5.120 4 H 0.260 0.740 5 C -0.072 4.072 6 C -0.032 4.032 7 N -0.089 5.089 8 C -0.095 4.095 9 C -0.227 4.227 10 C 0.376 3.624 11 O -0.433 6.433 12 N -0.343 5.343 13 C 0.092 3.908 14 H 0.112 0.888 15 C -0.052 4.052 16 C -0.557 4.557 17 H 0.095 0.905 18 C -0.131 4.131 19 N -0.536 5.536 20 Si 0.701 3.299 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.076 4.076 25 C -0.127 4.127 26 C -0.143 4.143 27 C -0.152 4.152 28 C -0.141 4.141 29 C -0.125 4.125 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.128 0.872 33 H 0.177 0.823 34 H 0.235 0.765 35 H 0.052 0.948 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.136 0.864 39 H 0.133 0.867 40 H 0.131 0.869 41 H 0.134 0.866 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.664 9.985 -13.200 17.842 hybrid contribution 0.845 -0.438 -0.200 0.972 sum -5.820 9.547 -13.400 17.452 Atomic orbital electron populations 1.20677 0.85975 1.04641 1.04154 1.20852 0.93979 0.84698 0.99078 1.41492 1.04449 1.09065 1.57020 0.73966 1.15014 0.79904 0.90660 1.21663 1.24313 0.92841 0.92881 0.93146 1.81312 1.09425 1.07358 1.10834 1.21284 0.97648 0.91266 0.99264 1.19481 0.92403 0.93277 1.17549 1.17185 0.85705 0.83595 0.75891 1.90699 1.16308 1.84480 1.51768 1.45673 1.09576 1.05563 1.73471 1.19951 1.00489 0.80229 0.90117 0.88821 1.19883 0.92876 0.95279 0.97168 1.21021 1.21094 1.21046 0.92529 0.90460 1.24977 0.96791 0.96651 0.94647 1.69905 1.34822 1.41905 1.06972 0.86882 0.81062 0.82563 0.79436 1.20294 1.21398 1.18913 1.20582 0.94213 0.96254 0.96580 1.20937 0.99351 0.99966 0.92396 1.21050 0.97822 0.98903 0.96554 1.21010 0.95974 0.99561 0.98682 1.21055 0.99540 1.00455 0.93064 1.21037 0.96988 0.97925 0.96593 0.89684 0.91641 0.87228 0.82348 0.76478 0.94826 0.96321 0.92686 0.86438 0.86739 0.86864 0.86584 0.86009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 9.87 36.01 0.36 -0.52 16 2 C 0.14 1.48 7.21 -81.49 -0.59 0.89 16 3 N -0.52 -4.49 6.02 -6.59 -0.04 -4.53 16 4 H 0.42 2.18 8.96 -40.82 -0.37 1.81 16 5 C 0.04 0.40 6.90 -83.98 -0.58 -0.17 16 6 C 0.28 3.29 15.88 -22.47 -0.36 2.93 16 7 N -0.41 -5.60 18.54 41.84 0.78 -4.82 16 8 C -0.07 -0.79 10.24 -39.05 -0.40 -1.19 16 9 C -0.22 -2.94 6.14 -105.00 -0.64 -3.58 16 10 C 0.59 9.84 7.77 -12.54 -0.10 9.75 16 11 O -0.55 -10.46 14.45 5.27 0.08 -10.38 16 12 N -0.69 -11.81 4.01 -56.03 -0.22 -12.03 16 13 C 0.20 3.70 2.12 -69.08 -0.15 3.56 16 14 H 0.09 1.95 7.44 -51.93 -0.39 1.57 16 15 C -0.01 -0.31 3.56 -27.88 -0.10 -0.41 16 16 C -0.52 -13.56 9.39 -34.44 -0.32 -13.89 16 17 H 0.08 2.23 7.99 -52.49 -0.42 1.81 16 18 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 19 N -0.90 -26.50 13.96 55.43 0.77 -25.72 16 20 Si 0.87 20.61 27.47 -169.99 -4.67 15.95 16 21 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 24 C -0.08 -1.27 4.91 -104.62 -0.51 -1.78 16 25 C -0.11 -1.65 9.33 -39.58 -0.37 -2.02 16 26 C -0.13 -1.69 10.05 -39.58 -0.40 -2.09 16 27 C -0.13 -1.74 10.05 -39.58 -0.40 -2.14 16 28 C -0.12 -1.68 10.05 -39.58 -0.40 -2.08 16 29 C -0.11 -1.69 9.67 -39.58 -0.38 -2.07 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.11 1.25 6.46 -51.93 -0.34 0.91 16 33 H 0.16 1.68 7.54 -52.49 -0.40 1.29 16 34 H 0.40 6.24 7.58 -40.82 -0.31 5.93 16 35 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 36 H 0.02 0.39 7.57 -51.93 -0.39 0.00 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.12 1.65 7.71 -52.49 -0.40 1.25 16 39 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 40 H 0.11 1.17 8.06 -52.49 -0.42 0.75 16 41 H 0.12 1.30 8.06 -52.49 -0.42 0.87 16 42 H 0.12 1.84 8.04 -52.49 -0.42 1.41 16 LS Contribution 369.05 15.07 5.56 5.56 Total: -1.00 -32.72 369.05 -8.27 -40.99 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.09 Total: 7.95 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -5.43 Total: -12.96 kcal Atomic # 7 Polarization: -48.39 SS G_CDS: 1.28 Total: -47.11 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.08 Total: -10.38 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -4.67 Total: 15.95 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.72 -8.27 -40.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362189841.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.904 kcal (2) G-P(sol) polarization free energy of solvation -32.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds