Wall clock time and date at job start Tue Mar 31 2020 14:42:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38049 * 120.34027 * 2 1 4 4 N 1.32032 * 121.15026 * 180.02562 * 3 2 1 5 5 C 1.32323 * 121.62449 * 0.02562 * 4 3 2 6 6 C 1.39823 * 120.25813 * 0.21029 * 5 4 3 7 7 C 1.38501 * 119.36406 * 359.53871 * 6 5 4 8 8 N 1.40161 * 120.02210 * 180.39449 * 6 5 4 9 9 C 1.34777 * 120.65819 * 163.57476 * 8 6 5 10 10 O 1.21571 * 120.00126 * 353.67151 * 9 8 6 11 11 C 1.47861 * 119.99930 * 173.67467 * 9 8 6 12 12 C 1.39930 * 120.02657 * 335.04194 * 11 9 8 13 13 C 1.38328 * 120.35641 * 180.24965 * 12 11 9 14 14 C 1.37755 * 120.41345 * 0.04573 * 13 12 11 15 15 C 1.40750 * 120.03967 * 359.95163 * 14 13 12 16 16 C 1.41439 * 120.17336 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00005 * 334.08852 * 16 15 14 18 18 C 1.39939 * 120.00087 * 154.08958 * 16 15 14 19 19 N 1.30829 * 119.99589 * 343.94878 * 18 16 15 20 20 Si 1.86792 * 120.00185 * 163.95412 * 18 16 15 21 21 H 1.48500 * 109.47321 * 59.99520 * 20 18 16 22 22 H 1.48495 * 109.47237 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47225 * 299.99698 * 20 18 16 24 24 C 1.39006 * 120.02554 * 155.31207 * 11 9 8 25 25 C 1.47109 * 118.68153 * 343.29777 * 8 6 5 26 26 C 1.53550 * 108.12238 * 44.83380 * 25 8 6 27 27 N 1.39515 * 120.11190 * 179.91056 * 5 4 3 28 28 H 1.08999 * 109.47073 * 93.96719 * 1 2 3 29 29 H 1.08996 * 109.46861 * 213.97089 * 1 2 3 30 30 H 1.09001 * 109.46887 * 333.97154 * 1 2 3 31 31 H 1.08005 * 119.42067 * 0.06428 * 3 2 1 32 32 H 1.07995 * 120.84140 * 180.18424 * 7 6 5 33 33 H 1.08005 * 119.81914 * 0.25409 * 12 11 9 34 34 H 1.08000 * 119.78976 * 179.97438 * 13 12 11 35 35 H 1.07997 * 119.97502 * 179.97438 * 14 13 12 36 36 H 0.97001 * 119.99805 * 179.97438 * 19 18 16 37 37 H 1.07997 * 120.20287 * 359.70513 * 24 11 9 38 38 H 1.09004 * 109.72998 * 164.48866 * 25 8 6 39 39 H 1.08997 * 109.73144 * 285.17240 * 25 8 6 40 40 H 1.08995 * 109.70234 * 63.07723 * 26 25 8 41 41 H 1.09000 * 109.69901 * 183.68145 * 26 25 8 42 42 H 0.97000 * 120.55083 * 343.06839 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1914 0.0000 4 7 3.5245 1.2101 -0.0005 5 6 4.2342 0.0933 -0.0015 6 6 3.5928 -1.1491 -0.0066 7 6 2.2087 -1.1989 -0.0007 8 7 4.3493 -2.3290 0.0007 9 6 3.7813 -3.5076 0.3242 10 8 2.6337 -3.5399 0.7241 11 6 4.5539 -4.7615 0.1926 12 6 5.6196 -4.8357 -0.7111 13 6 6.3437 -6.0069 -0.8434 14 6 6.0239 -7.1136 -0.0882 15 6 4.9553 -7.0578 0.8261 16 6 4.6247 -8.1923 1.6034 17 1 4.8665 -9.1819 1.2445 18 6 3.9845 -8.0327 2.8375 19 7 3.9700 -6.8614 3.4201 20 14 3.1508 -9.4918 3.6529 21 1 4.1535 -10.5580 3.9042 22 1 2.5505 -9.0624 4.9415 23 1 2.0849 -10.0150 2.7609 24 6 4.2186 -5.8691 0.9626 25 6 5.7742 -2.2563 -0.3577 26 6 6.3887 -1.0515 0.3695 27 7 5.6282 0.1498 -0.0039 28 1 -0.3633 -0.0711 -1.0252 29 1 -0.3633 -0.8522 0.5742 30 1 -0.3633 0.9235 0.4510 31 1 1.6604 2.1245 0.0011 32 1 1.6887 -2.1454 -0.0014 33 1 5.8782 -3.9739 -1.3086 34 1 7.1642 -6.0541 -1.5441 35 1 6.5937 -8.0245 -0.1975 36 1 3.5259 -6.7506 4.2754 37 1 3.3971 -5.8163 1.6617 38 1 6.2791 -3.1708 -0.0463 39 1 5.8766 -2.1273 -1.4351 40 1 6.3297 -1.2035 1.4472 41 1 7.4305 -0.9344 0.0709 42 1 6.0881 0.9682 -0.2481 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362750587.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:18 Heat of formation + Delta-G solvation = 36.850302 kcal Electronic energy + Delta-G solvation = -26854.131934 eV Core-core repulsion = 23184.811209 eV Total energy + Delta-G solvation = -3669.320725 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.42076 -40.57056 -38.90843 -38.31681 -35.91091 -35.53227 -33.71585 -33.03136 -31.42766 -31.29775 -29.32856 -27.48755 -27.27621 -25.44646 -24.48404 -23.97922 -22.76496 -21.71858 -20.53618 -19.44044 -18.81967 -18.38248 -17.97855 -17.27078 -16.89725 -16.71048 -16.52708 -15.84857 -15.51868 -15.38731 -15.23410 -14.96957 -14.73868 -14.46981 -14.22141 -14.07728 -13.89849 -13.74618 -13.40053 -13.24651 -13.00178 -12.91216 -12.83329 -12.59281 -12.34362 -12.12226 -11.90853 -11.68680 -11.48495 -11.14982 -11.05890 -10.92565 -10.35143 -9.71877 -9.45001 -9.38729 -8.69181 -8.39970 -6.41198 -0.00131 0.34699 0.51369 0.97413 1.35311 1.46067 1.48461 1.64145 1.92836 2.14319 2.17225 2.70167 2.88606 3.42553 3.62596 3.68466 3.74751 3.91237 4.08870 4.10605 4.16358 4.18885 4.35993 4.43861 4.53899 4.62220 4.78011 4.81270 4.85345 4.90045 4.92752 5.05672 5.09833 5.16283 5.27589 5.32566 5.46168 5.47476 5.65567 5.77727 5.89689 5.99021 6.01366 6.13939 6.27570 6.56357 6.63080 6.85250 6.90732 6.99175 7.12380 8.27551 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.015357 B = 0.003792 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.850933 B = 7382.482740 C = 8557.960206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.173 4.173 3 C 0.114 3.886 4 N -0.527 5.527 5 C 0.360 3.640 6 C 0.033 3.967 7 C -0.095 4.095 8 N -0.543 5.543 9 C 0.559 3.441 10 O -0.564 6.564 11 C -0.134 4.134 12 C -0.211 4.211 13 C -0.090 4.090 14 C -0.211 4.211 15 C 0.071 3.929 16 C -0.497 4.497 17 H 0.085 0.915 18 C 0.032 3.968 19 N -0.829 5.829 20 Si 0.980 3.020 21 H -0.251 1.251 22 H -0.273 1.273 23 H -0.262 1.262 24 C -0.126 4.126 25 C 0.058 3.942 26 C 0.116 3.884 27 N -0.722 5.722 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.190 0.810 32 H 0.138 0.862 33 H 0.152 0.848 34 H 0.145 0.855 35 H 0.111 0.889 36 H 0.286 0.714 37 H 0.094 0.906 38 H 0.133 0.867 39 H 0.102 0.898 40 H 0.052 0.948 41 H 0.151 0.849 42 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.159 13.124 -7.036 15.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.178 4.178 3 C -0.043 4.043 4 N -0.243 5.243 5 C 0.122 3.878 6 C -0.067 4.067 7 C -0.123 4.123 8 N -0.266 5.266 9 C 0.352 3.648 10 O -0.445 6.445 11 C -0.137 4.137 12 C -0.230 4.230 13 C -0.108 4.108 14 C -0.231 4.231 15 C 0.069 3.931 16 C -0.526 4.526 17 H 0.103 0.897 18 C -0.183 4.183 19 N -0.455 5.455 20 Si 0.801 3.199 21 H -0.175 1.175 22 H -0.198 1.198 23 H -0.186 1.186 24 C -0.147 4.147 25 C -0.063 4.063 26 C -0.009 4.009 27 N -0.359 5.359 28 H 0.097 0.903 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.207 0.793 32 H 0.156 0.844 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.129 0.871 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.151 0.849 39 H 0.120 0.880 40 H 0.070 0.930 41 H 0.169 0.831 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 3.080 13.801 -6.548 15.583 hybrid contribution -0.935 -1.414 0.768 1.861 sum 2.144 12.388 -5.780 13.837 Atomic orbital electron populations 1.20621 0.88237 1.03517 1.02943 1.20925 0.99021 0.92408 1.05399 1.22766 0.88053 0.98394 0.95107 1.67287 1.09335 1.27740 1.19920 1.18230 0.87027 0.86940 0.95633 1.18523 0.92062 0.85970 1.10133 1.21885 0.92364 1.00638 0.97366 1.45486 1.11712 1.04489 1.64884 1.19136 0.86165 0.84168 0.75306 1.90558 1.19970 1.87179 1.46772 1.19535 0.99603 0.92218 1.02383 1.21414 0.98446 1.00111 1.03013 1.20969 0.99409 0.92054 0.98367 1.21471 0.99126 0.99573 1.02922 1.17898 0.90498 0.92676 0.92077 1.19866 1.35535 0.94558 1.02674 0.89680 1.26797 0.94189 0.99774 0.97536 1.69859 1.33790 1.26472 1.15388 0.85271 0.79184 0.78069 0.77398 1.17476 1.19792 1.18643 1.21348 0.99991 0.93301 1.00046 1.23537 0.78514 1.02603 1.01659 1.22158 0.97611 0.82529 0.98652 1.44338 0.99991 1.15822 1.75795 0.90260 0.92789 0.88865 0.79277 0.84429 0.83103 0.83771 0.87103 0.90390 0.88756 0.84939 0.87994 0.92976 0.83145 0.74328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 10.04 71.24 0.71 -1.34 16 2 C -0.17 -4.93 5.90 -19.75 -0.12 -5.05 16 3 C 0.11 2.90 10.82 84.62 0.92 3.81 16 4 N -0.53 -15.20 10.39 -192.29 -2.00 -17.20 16 5 C 0.36 10.96 7.57 133.08 1.01 11.96 16 6 C 0.03 1.19 6.32 38.25 0.24 1.43 16 7 C -0.09 -3.47 8.66 22.49 0.19 -3.28 16 8 N -0.54 -19.66 2.98 -631.17 -1.88 -21.54 16 9 C 0.56 25.32 7.38 86.79 0.64 25.96 16 10 O -0.56 -29.27 13.52 -3.94 -0.05 -29.32 16 11 C -0.13 -6.20 5.52 -20.14 -0.11 -6.31 16 12 C -0.21 -7.77 7.50 22.70 0.17 -7.60 16 13 C -0.09 -3.28 10.01 22.18 0.22 -3.06 16 14 C -0.21 -9.32 9.78 22.77 0.22 -9.10 16 15 C 0.07 3.72 5.56 -21.32 -0.12 3.60 16 16 C -0.50 -26.43 9.05 23.47 0.21 -26.21 16 17 H 0.09 4.25 7.90 -2.91 -0.02 4.23 16 18 C 0.03 1.63 5.17 85.25 0.44 2.07 16 19 N -0.83 -45.39 10.94 21.83 0.24 -45.15 16 20 Si 0.98 39.12 29.59 68.60 2.03 41.15 16 21 H -0.25 -9.37 7.11 99.48 0.71 -8.66 16 22 H -0.27 -10.58 7.11 99.48 0.71 -9.87 16 23 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 24 C -0.13 -6.84 8.22 23.01 0.19 -6.66 16 25 C 0.06 1.48 4.69 86.45 0.41 1.88 16 26 C 0.12 2.30 7.26 86.47 0.63 2.93 16 27 N -0.72 -16.29 5.85 -342.06 -2.00 -18.29 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.05 1.30 8.12 -2.39 -0.02 1.28 16 30 H 0.09 1.44 8.07 -2.39 -0.02 1.42 16 31 H 0.19 3.24 8.06 -2.91 -0.02 3.22 16 32 H 0.14 5.85 5.38 -2.91 -0.02 5.83 16 33 H 0.15 4.29 4.72 -2.91 -0.01 4.28 16 34 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 35 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 36 H 0.29 14.51 8.30 -92.71 -0.77 13.74 16 37 H 0.09 5.76 5.98 -2.91 -0.02 5.74 16 38 H 0.13 3.52 4.59 -2.39 -0.01 3.51 16 39 H 0.10 2.14 7.63 -2.39 -0.02 2.12 16 40 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.42 7.30 8.96 -92.71 -0.83 6.47 16 Total: -1.00 -71.55 342.28 2.45 -69.10 By element: Atomic # 1 Polarization: 35.96 SS G_CDS: 0.25 Total: 36.22 kcal Atomic # 6 Polarization: -20.82 SS G_CDS: 5.86 Total: -14.96 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -5.64 Total: -102.18 kcal Atomic # 8 Polarization: -29.27 SS G_CDS: -0.05 Total: -29.32 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 2.03 Total: 41.15 kcal Total: -71.55 2.45 -69.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362750587.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.954 kcal (2) G-P(sol) polarization free energy of solvation -71.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds