Wall clock time and date at job start Tue Mar 31 2020 14:03:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86793 * 120.00144 * 2 1 4 4 H 1.48498 * 109.47627 * 240.00307 * 3 2 1 5 5 H 1.48504 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47215 * 119.99909 * 3 2 1 7 7 C 1.40223 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00060 * 196.75617 * 7 2 1 9 9 C 1.41117 * 119.99985 * 16.75666 * 7 2 1 10 10 C 1.40894 * 120.10060 * 205.51748 * 9 7 2 11 11 C 1.36306 * 119.88832 * 180.02562 * 10 9 7 12 12 C 1.40012 * 120.11213 * 359.97438 * 11 10 9 13 13 C 1.47644 * 119.90055 * 180.02562 * 12 11 10 14 14 O 1.21585 * 119.99649 * 333.29507 * 13 12 11 15 15 N 1.34770 * 120.00205 * 153.01551 * 13 12 11 16 16 C 1.47225 * 121.28326 * 174.33043 * 15 13 12 17 17 C 1.53402 * 107.69721 * 115.94889 * 16 15 13 18 18 C 1.50331 * 110.71468 * 47.33129 * 17 16 15 19 19 C 1.39374 * 118.48773 * 160.61041 * 18 17 16 20 20 C 1.37860 * 119.54531 * 178.97845 * 19 18 17 21 21 N 1.31983 * 120.74285 * 0.02562 * 20 19 18 22 22 C 1.32232 * 121.46966 * 0.20068 * 21 20 19 23 23 N 1.39006 * 119.59710 * 179.97438 * 22 21 20 24 24 C 1.37511 * 123.12395 * 339.98012 * 18 17 16 25 25 C 1.46764 * 121.28276 * 354.60941 * 15 13 12 26 26 C 1.40012 * 120.20713 * 0.29103 * 12 11 10 27 27 C 1.36322 * 120.10502 * 359.44717 * 26 12 11 28 28 H 0.97003 * 119.99981 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.05170 * 0.04348 * 10 9 7 30 30 H 1.08000 * 119.94530 * 179.97438 * 11 10 9 31 31 H 1.09001 * 109.75762 * 235.56064 * 16 15 13 32 32 H 1.08999 * 109.76007 * 356.31731 * 16 15 13 33 33 H 1.08999 * 109.33748 * 286.95109 * 17 16 15 34 34 H 1.09001 * 109.10133 * 167.56128 * 17 16 15 35 35 H 1.07996 * 120.23236 * 358.96720 * 19 18 17 36 36 H 1.08001 * 119.63125 * 180.02562 * 20 19 18 37 37 H 0.96998 * 119.99773 * 180.02562 * 23 22 21 38 38 H 0.96997 * 119.99846 * 0.02562 * 23 22 21 39 39 H 1.08999 * 109.45587 * 344.36973 * 25 15 13 40 40 H 1.09003 * 109.45236 * 104.31463 * 25 15 13 41 41 H 1.08000 * 119.95152 * 179.70545 * 26 12 11 42 42 H 1.08004 * 120.05583 * 180.26888 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0943 1.6963 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0532 -1.2344 0.2691 9 6 1.3469 -2.4104 -0.3534 10 6 1.8173 -3.6470 0.1310 11 6 1.1762 -4.7996 -0.2130 12 6 0.0515 -4.7560 -1.0458 13 6 -0.6398 -6.0073 -1.4151 14 8 -0.0266 -7.0570 -1.4364 15 7 -1.9517 -5.9869 -1.7229 16 6 -2.6407 -7.1920 -2.2134 17 6 -3.7008 -7.5785 -1.1741 18 6 -4.5031 -6.3764 -0.7604 19 6 -5.7440 -6.5801 -0.1595 20 6 -6.4887 -5.4937 0.2477 21 7 -6.0397 -4.2648 0.0742 22 6 -4.8696 -4.0314 -0.4957 23 7 -4.4348 -2.7212 -0.6595 24 6 -4.0655 -5.0846 -0.9352 25 6 -2.7472 -4.7609 -1.5878 26 6 -0.4164 -3.5301 -1.5342 27 6 0.2150 -2.3716 -1.1913 28 1 -0.4850 0.8401 0.0004 29 1 2.6844 -3.6814 0.7740 30 1 1.5362 -5.7480 0.1574 31 1 -3.1189 -6.9795 -3.1696 32 1 -1.9235 -8.0041 -2.3317 33 1 -3.2096 -8.0011 -0.2976 34 1 -4.3683 -8.3243 -1.6058 35 1 -6.1198 -7.5821 -0.0140 36 1 -7.4503 -5.6500 0.7139 37 1 -3.5777 -2.5433 -1.0772 38 1 -4.9887 -1.9850 -0.3561 39 1 -2.2048 -4.0420 -0.9738 40 1 -2.9257 -4.3335 -2.5746 41 1 -1.2815 -3.5018 -2.1802 42 1 -0.1493 -1.4260 -1.5650 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363115313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:46 Heat of formation + Delta-G solvation = 32.055161 kcal Electronic energy + Delta-G solvation = -26892.427641 eV Core-core repulsion = 23222.898983 eV Total energy + Delta-G solvation = -3669.528658 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.77726 -39.22416 -37.31969 -36.11500 -35.09702 -33.95656 -32.61221 -31.17233 -30.02403 -29.57398 -28.97089 -26.38290 -25.57793 -24.07587 -22.22692 -22.07603 -20.98275 -20.69769 -18.81877 -17.61737 -17.45058 -16.88746 -16.31197 -15.96978 -15.48376 -15.29001 -14.97020 -14.82304 -14.44202 -14.17781 -13.97849 -13.54650 -13.36093 -13.18521 -12.86540 -12.54141 -12.43051 -12.25741 -12.06849 -11.94494 -11.60541 -11.30360 -11.26615 -11.10065 -11.03528 -10.67043 -10.61699 -10.11411 -9.59164 -9.46113 -9.37991 -9.19042 -9.01712 -8.34812 -7.80495 -7.64542 -7.59859 -7.08058 -4.65918 1.33074 1.52370 2.19484 2.89210 2.90923 2.93306 2.95106 3.37251 3.62962 3.68795 3.73541 3.95121 4.44192 4.56505 4.71014 4.90656 5.04834 5.14930 5.28152 5.42648 5.45045 5.51117 5.59569 5.61935 5.71412 5.81301 5.94575 5.98311 6.04792 6.15555 6.22875 6.48538 6.68815 6.70266 6.75567 6.80417 6.98117 7.06018 7.34585 7.37297 7.54354 7.55833 7.71447 7.78827 7.98028 8.03854 8.33251 8.33361 8.57698 8.68419 8.91094 9.83751 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.004041 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.136347 B = 6927.722190 C = 8549.806957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.774 5.774 2 C 0.076 3.924 3 Si 0.913 3.087 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.443 4.443 8 H 0.084 0.916 9 C 0.128 3.872 10 C -0.235 4.235 11 C -0.024 4.024 12 C -0.281 4.281 13 C 0.579 3.421 14 O -0.568 6.568 15 N -0.618 5.618 16 C 0.113 3.887 17 C -0.098 4.098 18 C 0.012 3.988 19 C -0.240 4.240 20 C 0.142 3.858 21 N -0.551 5.551 22 C 0.418 3.582 23 N -0.845 5.845 24 C -0.209 4.209 25 C 0.148 3.852 26 C -0.081 4.081 27 C -0.176 4.176 28 H 0.286 0.714 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.067 0.933 32 H 0.097 0.903 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.152 0.848 37 H 0.412 0.588 38 H 0.404 0.596 39 H 0.121 0.879 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.658 -4.563 -2.655 11.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.145 4.145 3 Si 0.737 3.263 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.187 1.187 7 C -0.471 4.471 8 H 0.102 0.898 9 C 0.125 3.875 10 C -0.255 4.255 11 C -0.043 4.043 12 C -0.286 4.286 13 C 0.376 3.624 14 O -0.449 6.449 15 N -0.351 5.351 16 C -0.010 4.010 17 C -0.136 4.136 18 C 0.005 3.995 19 C -0.263 4.263 20 C -0.014 4.014 21 N -0.269 5.269 22 C 0.178 3.822 23 N -0.388 5.388 24 C -0.217 4.217 25 C 0.025 3.975 26 C -0.099 4.099 27 C -0.195 4.195 28 H 0.098 0.902 29 H 0.116 0.884 30 H 0.116 0.884 31 H 0.085 0.915 32 H 0.115 0.885 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.146 0.854 36 H 0.169 0.831 37 H 0.244 0.756 38 H 0.233 0.767 39 H 0.138 0.862 40 H 0.088 0.912 41 H 0.119 0.881 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -11.024 -4.280 -2.376 12.062 hybrid contribution 0.691 0.478 -0.153 0.854 sum -10.333 -3.801 -2.528 11.296 Atomic orbital electron populations 1.69708 1.07844 1.30065 1.32161 1.26055 0.94847 1.01773 0.91843 0.86265 0.80231 0.79462 0.80358 1.18490 1.20040 1.18694 1.19815 0.98047 0.91078 1.38170 0.89805 1.17775 0.90512 0.92108 0.87085 1.20723 1.04377 0.92739 1.07651 1.20302 0.92633 0.97033 0.94313 1.18834 1.03826 0.91153 1.14749 1.18666 0.79793 0.89442 0.74543 1.90636 1.65746 1.33524 1.54990 1.47834 1.09041 1.10413 1.67822 1.21573 0.94522 0.89304 0.95554 1.20928 0.97180 0.94994 1.00490 1.19483 0.93379 0.93610 0.93062 1.21740 0.96764 1.00283 1.07546 1.22225 0.98404 0.86667 0.94113 1.67172 1.14170 1.24918 1.20689 1.18207 0.88721 0.85802 0.89455 1.42369 1.24684 1.03563 1.68216 1.20105 0.99365 0.92843 1.09392 1.20920 0.88204 0.88569 0.99827 1.20875 0.98004 0.92449 0.98617 1.20990 0.99813 0.96754 1.01945 0.90241 0.88360 0.88398 0.91507 0.88503 0.89577 0.89562 0.85439 0.83108 0.75603 0.76679 0.86161 0.91233 0.88091 0.86069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.47 10.94 55.56 0.61 -16.86 16 2 C 0.08 1.70 5.15 -17.31 -0.09 1.61 16 3 Si 0.91 16.78 29.59 -169.99 -5.03 11.75 16 4 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 5 H -0.28 -4.92 7.11 56.52 0.40 -4.52 16 6 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 7 C -0.44 -10.67 9.05 -37.74 -0.34 -11.01 16 8 H 0.08 1.94 7.90 -52.48 -0.41 1.53 16 9 C 0.13 3.14 5.57 -106.80 -0.59 2.55 16 10 C -0.24 -5.54 9.73 -39.27 -0.38 -5.92 16 11 C -0.02 -0.54 9.52 -39.61 -0.38 -0.92 16 12 C -0.28 -6.24 5.52 -104.73 -0.58 -6.82 16 13 C 0.58 12.21 7.49 -12.42 -0.09 12.12 16 14 O -0.57 -13.27 16.13 5.29 0.09 -13.18 16 15 N -0.62 -10.61 2.93 -175.24 -0.51 -11.12 16 16 C 0.11 1.59 6.47 -3.44 -0.02 1.56 16 17 C -0.10 -1.20 5.92 -27.85 -0.16 -1.36 16 18 C 0.01 0.17 5.76 -104.64 -0.60 -0.43 16 19 C -0.24 -2.87 9.72 -39.30 -0.38 -3.25 16 20 C 0.14 1.75 11.17 -17.62 -0.20 1.56 16 21 N -0.55 -8.06 10.39 -12.39 -0.13 -8.18 16 22 C 0.42 6.18 7.72 -154.99 -1.20 4.98 16 23 N -0.84 -10.88 8.98 31.19 0.28 -10.60 16 24 C -0.21 -3.13 5.83 -104.42 -0.61 -3.74 16 25 C 0.15 2.30 3.40 -5.09 -0.02 2.29 16 26 C -0.08 -1.69 7.41 -39.61 -0.29 -1.98 16 27 C -0.18 -4.04 8.63 -39.27 -0.34 -4.38 16 28 H 0.29 5.84 8.29 -40.82 -0.34 5.50 16 29 H 0.10 2.17 8.06 -52.48 -0.42 1.75 16 30 H 0.10 2.18 7.86 -52.49 -0.41 1.76 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.10 1.42 7.09 -51.93 -0.37 1.06 16 33 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 34 H 0.09 0.80 8.12 -51.93 -0.42 0.38 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.15 1.38 8.06 -52.49 -0.42 0.95 16 37 H 0.41 5.19 7.06 -40.82 -0.29 4.90 16 38 H 0.40 4.62 8.95 -40.82 -0.37 4.25 16 39 H 0.12 2.08 3.97 -51.93 -0.21 1.87 16 40 H 0.07 0.97 7.64 -51.93 -0.40 0.57 16 41 H 0.10 1.80 4.97 -52.49 -0.26 1.54 16 42 H 0.12 2.79 6.18 -52.48 -0.32 2.47 16 LS Contribution 342.83 15.07 5.17 5.17 Total: -1.00 -28.64 342.83 -10.52 -39.16 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.03 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -6.28 Total: -13.16 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.25 Total: -46.77 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.09 Total: -13.18 kcal Atomic # 14 Polarization: 16.78 SS G_CDS: -5.03 Total: 11.75 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.64 -10.52 -39.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363115313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.219 kcal (2) G-P(sol) polarization free energy of solvation -28.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds