Wall clock time and date at job start Tue Mar 31 2020 14:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30650 * 1 3 3 Si 1.86793 * 120.00144 * 2 1 4 4 H 1.48498 * 109.47627 * 240.00307 * 3 2 1 5 5 H 1.48504 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.47215 * 119.99909 * 3 2 1 7 7 C 1.40223 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00060 * 196.75617 * 7 2 1 9 9 C 1.41117 * 119.99985 * 16.75666 * 7 2 1 10 10 C 1.40894 * 120.10060 * 205.51748 * 9 7 2 11 11 C 1.36306 * 119.88832 * 180.02562 * 10 9 7 12 12 C 1.40012 * 120.11213 * 359.97438 * 11 10 9 13 13 C 1.47644 * 119.90055 * 180.02562 * 12 11 10 14 14 O 1.21585 * 119.99649 * 333.29507 * 13 12 11 15 15 N 1.34770 * 120.00205 * 153.01551 * 13 12 11 16 16 C 1.47225 * 121.28326 * 174.33043 * 15 13 12 17 17 C 1.53402 * 107.69721 * 115.94889 * 16 15 13 18 18 C 1.50331 * 110.71468 * 47.33129 * 17 16 15 19 19 C 1.39374 * 118.48773 * 160.61041 * 18 17 16 20 20 C 1.37860 * 119.54531 * 178.97845 * 19 18 17 21 21 N 1.31983 * 120.74285 * 0.02562 * 20 19 18 22 22 C 1.32232 * 121.46966 * 0.20068 * 21 20 19 23 23 N 1.39006 * 119.59710 * 179.97438 * 22 21 20 24 24 C 1.37511 * 123.12395 * 339.98012 * 18 17 16 25 25 C 1.46764 * 121.28276 * 354.60941 * 15 13 12 26 26 C 1.40012 * 120.20713 * 0.29103 * 12 11 10 27 27 C 1.36322 * 120.10502 * 359.44717 * 26 12 11 28 28 H 0.97003 * 119.99981 * 359.97438 * 1 2 3 29 29 H 1.08006 * 120.05170 * 0.04348 * 10 9 7 30 30 H 1.08000 * 119.94530 * 179.97438 * 11 10 9 31 31 H 1.09001 * 109.75762 * 235.56064 * 16 15 13 32 32 H 1.08999 * 109.76007 * 356.31731 * 16 15 13 33 33 H 1.08999 * 109.33748 * 286.95109 * 17 16 15 34 34 H 1.09001 * 109.10133 * 167.56128 * 17 16 15 35 35 H 1.07996 * 120.23236 * 358.96720 * 19 18 17 36 36 H 1.08001 * 119.63125 * 180.02562 * 20 19 18 37 37 H 0.96998 * 119.99773 * 180.02562 * 23 22 21 38 38 H 0.96997 * 119.99846 * 0.02562 * 23 22 21 39 39 H 1.08999 * 109.45587 * 344.36973 * 25 15 13 40 40 H 1.09003 * 109.45236 * 104.31463 * 25 15 13 41 41 H 1.08000 * 119.95152 * 179.70545 * 26 12 11 42 42 H 1.08004 * 120.05583 * 180.26888 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3065 0.0000 0.0000 3 14 2.2405 1.6177 0.0000 4 1 3.0942 1.6964 -1.2125 5 1 1.2755 2.7464 0.0006 6 1 3.0943 1.6963 1.2125 7 6 2.0076 -1.2144 -0.0005 8 1 3.0532 -1.2344 0.2691 9 6 1.3469 -2.4104 -0.3534 10 6 1.8173 -3.6470 0.1310 11 6 1.1762 -4.7996 -0.2130 12 6 0.0515 -4.7560 -1.0458 13 6 -0.6398 -6.0073 -1.4151 14 8 -0.0266 -7.0570 -1.4364 15 7 -1.9517 -5.9869 -1.7229 16 6 -2.6407 -7.1920 -2.2134 17 6 -3.7008 -7.5785 -1.1741 18 6 -4.5031 -6.3764 -0.7604 19 6 -5.7440 -6.5801 -0.1595 20 6 -6.4887 -5.4937 0.2477 21 7 -6.0397 -4.2648 0.0742 22 6 -4.8696 -4.0314 -0.4957 23 7 -4.4348 -2.7212 -0.6595 24 6 -4.0655 -5.0846 -0.9352 25 6 -2.7472 -4.7609 -1.5878 26 6 -0.4164 -3.5301 -1.5342 27 6 0.2150 -2.3716 -1.1913 28 1 -0.4850 0.8401 0.0004 29 1 2.6844 -3.6814 0.7740 30 1 1.5362 -5.7480 0.1574 31 1 -3.1189 -6.9795 -3.1696 32 1 -1.9235 -8.0041 -2.3317 33 1 -3.2096 -8.0011 -0.2976 34 1 -4.3683 -8.3243 -1.6058 35 1 -6.1198 -7.5821 -0.0140 36 1 -7.4503 -5.6500 0.7139 37 1 -3.5777 -2.5433 -1.0772 38 1 -4.9887 -1.9850 -0.3561 39 1 -2.2048 -4.0420 -0.9738 40 1 -2.9257 -4.3335 -2.5746 41 1 -1.2815 -3.5018 -2.1802 42 1 -0.1493 -1.4260 -1.5650 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363115313.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:45 Heat of formation + Delta-G solvation = 16.303513 kcal Electronic energy + Delta-G solvation = -26893.110684 eV Core-core repulsion = 23222.898983 eV Total energy + Delta-G solvation = -3670.211701 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.93973 -40.66353 -38.99530 -37.49319 -36.16869 -35.63891 -33.85174 -32.47673 -31.50840 -31.30415 -30.08423 -27.93464 -26.93346 -25.27773 -23.65049 -23.31851 -22.57642 -22.09125 -20.19992 -19.34597 -18.70741 -17.97892 -17.71988 -17.35071 -16.98126 -16.59399 -16.17601 -15.89316 -15.81693 -15.55253 -15.25312 -14.99928 -14.77014 -14.56994 -14.30523 -14.01472 -13.77193 -13.70182 -13.37212 -13.23510 -13.16878 -12.85282 -12.67957 -12.53019 -12.28709 -12.23893 -11.78710 -11.61127 -11.30778 -11.08295 -10.74442 -10.46176 -10.24136 -9.72647 -9.52462 -9.37712 -8.77463 -8.69774 -6.47043 0.30700 0.46943 0.52531 1.12673 1.39821 1.44419 1.51681 1.96423 2.09936 2.18101 2.64098 2.73592 2.93868 3.51807 3.65034 3.65470 3.85135 3.92280 4.10947 4.18492 4.30116 4.31544 4.40353 4.41508 4.45911 4.64545 4.67034 4.78503 4.83783 4.92362 5.02408 5.05791 5.07541 5.15396 5.29012 5.46181 5.52052 5.60364 5.74748 5.80550 5.95693 5.99104 6.22727 6.32333 6.45732 6.54402 6.59672 6.78530 6.88926 7.29799 7.33149 8.17451 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014130 B = 0.004041 C = 0.003274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1981.136347 B = 6927.722190 C = 8549.806957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.043 3.957 3 Si 0.982 3.018 4 H -0.260 1.260 5 H -0.263 1.263 6 H -0.262 1.262 7 C -0.476 4.476 8 H 0.082 0.918 9 C 0.103 3.897 10 C -0.252 4.252 11 C -0.035 4.035 12 C -0.293 4.293 13 C 0.576 3.424 14 O -0.598 6.598 15 N -0.611 5.611 16 C 0.107 3.893 17 C -0.091 4.091 18 C 0.002 3.998 19 C -0.234 4.234 20 C 0.136 3.864 21 N -0.570 5.570 22 C 0.404 3.596 23 N -0.842 5.842 24 C -0.230 4.230 25 C 0.152 3.848 26 C -0.065 4.065 27 C -0.191 4.191 28 H 0.297 0.703 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.124 0.876 35 H 0.160 0.840 36 H 0.184 0.816 37 H 0.412 0.588 38 H 0.409 0.591 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.132 0.868 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.832 -4.618 -3.144 13.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.416 5.416 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.184 1.184 5 H -0.187 1.187 6 H -0.187 1.187 7 C -0.503 4.503 8 H 0.100 0.900 9 C 0.099 3.901 10 C -0.271 4.271 11 C -0.054 4.054 12 C -0.297 4.297 13 C 0.371 3.629 14 O -0.482 6.482 15 N -0.343 5.343 16 C -0.015 4.015 17 C -0.128 4.128 18 C -0.006 4.006 19 C -0.256 4.256 20 C -0.019 4.019 21 N -0.289 5.289 22 C 0.164 3.836 23 N -0.386 5.386 24 C -0.238 4.238 25 C 0.029 3.971 26 C -0.084 4.084 27 C -0.210 4.210 28 H 0.108 0.892 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.110 0.890 32 H 0.106 0.894 33 H 0.094 0.906 34 H 0.142 0.858 35 H 0.178 0.822 36 H 0.201 0.799 37 H 0.243 0.757 38 H 0.239 0.761 39 H 0.117 0.883 40 H 0.106 0.894 41 H 0.150 0.850 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -13.248 -4.337 -2.870 14.232 hybrid contribution 1.226 0.407 0.023 1.292 sum -12.022 -3.930 -2.848 12.965 Atomic orbital electron populations 1.69716 1.08878 1.31556 1.31485 1.26788 0.95612 1.04348 0.90957 0.85229 0.78965 0.75435 0.80092 1.18432 1.18656 1.18657 1.20057 0.98305 0.92179 1.39778 0.90036 1.18112 0.91475 0.92626 0.87845 1.20841 1.04966 0.92964 1.08378 1.20436 0.93266 0.96885 0.94861 1.19127 1.03767 0.92424 1.14386 1.18490 0.81123 0.88462 0.74793 1.90611 1.66870 1.34119 1.56611 1.47825 1.07940 1.12198 1.66302 1.21859 0.94667 0.87642 0.97283 1.20920 0.96957 0.95276 0.99649 1.19770 0.94287 0.93396 0.93122 1.22063 0.95726 1.01767 1.06091 1.22861 0.99557 0.86091 0.93379 1.67237 1.14186 1.26323 1.21201 1.18376 0.89097 0.86220 0.89908 1.42359 1.24698 1.03449 1.68101 1.20071 0.99046 0.93787 1.10933 1.20859 0.88270 0.87463 1.00537 1.21093 0.98085 0.91287 0.97922 1.21018 1.00122 0.97330 1.02508 0.89166 0.88037 0.88353 0.89026 0.89406 0.90583 0.85768 0.82233 0.79941 0.75656 0.76095 0.88251 0.89405 0.85045 0.86318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -35.82 10.94 21.87 0.24 -35.58 16 2 C 0.04 1.90 5.15 85.35 0.44 2.34 16 3 Si 0.98 33.99 29.59 68.60 2.03 36.02 16 4 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 5 H -0.26 -8.46 7.11 99.48 0.71 -7.75 16 6 H -0.26 -9.00 7.11 99.48 0.71 -8.29 16 7 C -0.48 -23.53 9.05 23.46 0.21 -23.32 16 8 H 0.08 3.91 7.90 -2.91 -0.02 3.88 16 9 C 0.10 5.19 5.57 -21.28 -0.12 5.07 16 10 C -0.25 -12.38 9.73 22.47 0.22 -12.16 16 11 C -0.04 -1.68 9.52 22.25 0.21 -1.47 16 12 C -0.29 -13.23 5.52 -19.93 -0.11 -13.34 16 13 C 0.58 24.39 7.49 86.73 0.65 25.04 16 14 O -0.60 -28.29 16.13 -3.99 -0.06 -28.35 16 15 N -0.61 -20.38 2.93 -826.62 -2.42 -22.80 16 16 C 0.11 2.78 6.47 86.38 0.56 3.34 16 17 C -0.09 -1.95 5.92 29.87 0.18 -1.78 16 18 C 0.00 0.05 5.76 -19.88 -0.11 -0.06 16 19 C -0.23 -4.75 9.72 22.45 0.22 -4.53 16 20 C 0.14 2.96 11.17 84.58 0.94 3.91 16 21 N -0.57 -15.63 10.39 -193.12 -2.01 -17.64 16 22 C 0.40 11.45 7.72 133.22 1.03 12.47 16 23 N -0.84 -21.23 8.98 -55.23 -0.50 -21.73 16 24 C -0.23 -6.53 5.83 -19.73 -0.12 -6.64 16 25 C 0.15 4.55 3.40 85.56 0.29 4.84 16 26 C -0.07 -2.76 7.41 22.25 0.16 -2.60 16 27 C -0.19 -8.96 8.63 22.47 0.19 -8.77 16 28 H 0.30 11.92 8.29 -92.71 -0.77 11.15 16 29 H 0.10 4.73 8.06 -2.91 -0.02 4.70 16 30 H 0.10 4.57 7.86 -2.91 -0.02 4.54 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.09 2.47 7.09 -2.39 -0.02 2.45 16 33 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.12 1.75 8.12 -2.39 -0.02 1.73 16 35 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 36 H 0.18 2.63 8.06 -2.91 -0.02 2.60 16 37 H 0.41 10.25 7.06 -92.71 -0.65 9.60 16 38 H 0.41 9.17 8.95 -92.71 -0.83 8.34 16 39 H 0.10 3.41 3.97 -2.39 -0.01 3.40 16 40 H 0.09 2.29 7.64 -2.39 -0.02 2.27 16 41 H 0.13 4.61 4.97 -2.91 -0.01 4.60 16 42 H 0.12 5.56 6.18 -2.91 -0.02 5.55 16 Total: -1.00 -63.06 342.83 1.75 -61.32 By element: Atomic # 1 Polarization: 46.82 SS G_CDS: -0.38 Total: 46.43 kcal Atomic # 6 Polarization: -22.52 SS G_CDS: 4.85 Total: -17.67 kcal Atomic # 7 Polarization: -93.06 SS G_CDS: -4.69 Total: -97.75 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -0.06 Total: -28.35 kcal Atomic # 14 Polarization: 33.99 SS G_CDS: 2.03 Total: 36.02 kcal Total: -63.06 1.75 -61.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363115313.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.619 kcal (2) G-P(sol) polarization free energy of solvation -63.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds