Wall clock time and date at job start Tue Mar 31 2020 14:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 119.99752 * 2 1 4 4 H 1.48499 * 109.46913 * 273.82159 * 3 2 1 5 5 H 1.48500 * 109.47196 * 33.82097 * 3 2 1 6 6 H 1.48505 * 109.47090 * 153.82448 * 3 2 1 7 7 C 1.39942 * 120.00472 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99619 * 347.94764 * 7 2 1 9 9 C 1.41437 * 120.00099 * 167.94097 * 7 2 1 10 10 C 1.40787 * 120.17909 * 330.54116 * 9 7 2 11 11 C 1.37710 * 120.03746 * 180.27596 * 10 9 7 12 12 C 1.38371 * 120.41061 * 359.48674 * 11 10 9 13 13 C 1.39876 * 120.36224 * 0.26060 * 12 11 10 14 14 C 1.47883 * 120.02589 * 180.02562 * 13 12 11 15 15 O 1.21548 * 120.00387 * 316.42854 * 14 13 12 16 16 N 1.34784 * 119.99742 * 136.43164 * 14 13 12 17 17 C 1.47232 * 121.28916 * 184.59266 * 16 14 13 18 18 C 1.52869 * 107.98832 * 115.93150 * 17 16 14 19 19 C 1.50326 * 110.76333 * 47.06580 * 18 17 16 20 20 C 1.39378 * 118.49793 * 160.28353 * 19 18 17 21 21 C 1.37857 * 119.55368 * 179.54016 * 20 19 18 22 22 N 1.31979 * 120.74100 * 359.92184 * 21 20 19 23 23 C 1.32235 * 121.46907 * 0.24974 * 22 21 20 24 24 N 1.39005 * 119.59640 * 180.02562 * 23 22 21 25 25 C 1.37509 * 123.13197 * 340.17670 * 19 18 17 26 26 C 1.46761 * 121.29187 * 4.30680 * 16 14 13 27 27 C 1.39037 * 119.94912 * 359.97438 * 13 12 11 28 28 H 0.96993 * 119.99941 * 359.97438 * 1 2 3 29 29 H 1.07995 * 119.97921 * 0.03854 * 10 9 7 30 30 H 1.08003 * 119.79197 * 179.76995 * 11 10 9 31 31 H 1.08007 * 119.81920 * 180.23730 * 12 11 10 32 32 H 1.08997 * 109.75166 * 235.55207 * 17 16 14 33 33 H 1.08997 * 109.75862 * 356.30894 * 17 16 14 34 34 H 1.09000 * 109.21782 * 167.39612 * 18 17 16 35 35 H 1.09007 * 109.22072 * 286.73145 * 18 17 16 36 36 H 1.08001 * 120.22591 * 359.56160 * 20 19 18 37 37 H 1.07998 * 119.63262 * 179.91602 * 21 20 19 38 38 H 0.96998 * 119.99724 * 179.97438 * 24 23 22 39 39 H 0.96996 * 120.00146 * 359.97438 * 24 23 22 40 40 H 1.09004 * 109.45838 * 344.46997 * 26 16 14 41 41 H 1.08997 * 109.45371 * 104.42856 * 26 16 14 42 42 H 1.07995 * 120.20594 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4089 2.0931 -1.3970 5 1 1.4824 2.6280 0.7793 6 1 3.5779 1.4183 0.6176 7 6 2.0081 -1.2119 -0.0005 8 1 1.4860 -2.1370 0.1943 9 6 3.3991 -1.2252 -0.2564 10 6 3.9766 -0.2402 -1.0801 11 6 5.3303 -0.2593 -1.3319 12 6 6.1334 -1.2367 -0.7712 13 6 5.5783 -2.2204 0.0539 14 6 6.4436 -3.2611 0.6498 15 8 7.2962 -3.8029 -0.0262 16 7 6.2866 -3.6090 1.9424 17 6 7.1956 -4.5680 2.5920 18 6 7.9434 -3.8312 3.7032 19 6 6.9923 -3.0210 4.5392 20 6 7.3967 -2.6273 5.8136 21 6 6.5455 -1.8756 6.5951 22 7 5.3541 -1.5240 6.1493 23 6 4.9337 -1.8811 4.9475 24 7 3.6716 -1.4888 4.5170 25 6 5.7420 -2.6472 4.1059 26 6 5.2068 -3.0420 2.7588 27 6 4.2125 -2.2182 0.3143 28 1 -0.4850 0.8400 0.0004 29 1 3.3570 0.5284 -1.5177 30 1 5.7687 0.4961 -1.9673 31 1 7.1946 -1.2403 -0.9720 32 1 6.6206 -5.3905 3.0173 33 1 7.9072 -4.9537 1.8620 34 1 8.4494 -4.5583 4.3384 35 1 8.6847 -3.1675 3.2580 36 1 8.3705 -2.9090 6.1862 37 1 6.8570 -1.5710 7.5833 38 1 3.3575 -1.7472 3.6364 39 1 3.1050 -0.9567 5.0972 40 1 4.7973 -2.1637 2.2598 41 1 4.4205 -3.7857 2.8879 42 1 3.7796 -2.9755 0.9511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363508322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:39 Heat of formation + Delta-G solvation = 29.057708 kcal Electronic energy + Delta-G solvation = -27242.634179 eV Core-core repulsion = 23572.975542 eV Total energy + Delta-G solvation = -3669.658637 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.87736 -39.47032 -37.57880 -36.34985 -35.10658 -33.76309 -32.75424 -31.29810 -30.68181 -30.05939 -28.96731 -26.13040 -25.31800 -24.44107 -22.89824 -22.11574 -21.13787 -20.73846 -19.10077 -17.97912 -17.08345 -16.93775 -16.34229 -16.05395 -15.90385 -15.37332 -15.07274 -14.87564 -14.69957 -14.43481 -14.05749 -13.81833 -13.64728 -13.32123 -12.98461 -12.80861 -12.59038 -12.39317 -12.28605 -12.13231 -11.78883 -11.49807 -11.35784 -11.19300 -10.86610 -10.66267 -10.63214 -9.99300 -9.84375 -9.58863 -9.47189 -9.25265 -9.19442 -8.55268 -7.95000 -7.84395 -7.70102 -7.08515 -4.69360 1.28236 1.48127 1.93429 2.40933 2.97851 3.08182 3.10071 3.17103 3.34738 3.61937 3.82439 3.90806 4.33073 4.48380 4.62676 4.82121 4.92309 5.04944 5.13349 5.18303 5.27504 5.38502 5.50042 5.55401 5.62364 5.72126 5.80840 5.84171 5.94835 6.02844 6.03955 6.21082 6.39926 6.43771 6.53903 6.65029 6.65990 6.86880 7.10309 7.28715 7.34292 7.37309 7.54831 7.60099 7.65964 7.78640 8.14892 8.31263 8.37992 8.50186 8.60208 9.93261 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012187 B = 0.005142 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.069276 B = 5444.530323 C = 6938.919660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C 0.083 3.917 3 Si 0.910 3.090 4 H -0.271 1.271 5 H -0.292 1.292 6 H -0.241 1.241 7 C -0.445 4.445 8 H 0.094 0.906 9 C 0.087 3.913 10 C -0.217 4.217 11 C -0.082 4.082 12 C -0.188 4.188 13 C -0.096 4.096 14 C 0.573 3.427 15 O -0.546 6.546 16 N -0.609 5.609 17 C 0.111 3.889 18 C -0.098 4.098 19 C 0.011 3.989 20 C -0.241 4.241 21 C 0.144 3.856 22 N -0.550 5.550 23 C 0.420 3.580 24 N -0.845 5.845 25 C -0.209 4.209 26 C 0.144 3.856 27 C -0.187 4.187 28 H 0.287 0.713 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.072 0.928 33 H 0.099 0.901 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.128 0.872 37 H 0.152 0.848 38 H 0.415 0.585 39 H 0.405 0.595 40 H 0.120 0.880 41 H 0.076 0.924 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.213 -3.314 10.387 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.136 4.136 3 Si 0.737 3.263 4 H -0.197 1.197 5 H -0.220 1.220 6 H -0.165 1.165 7 C -0.474 4.474 8 H 0.111 0.889 9 C 0.084 3.916 10 C -0.236 4.236 11 C -0.100 4.100 12 C -0.208 4.208 13 C -0.099 4.099 14 C 0.365 3.635 15 O -0.424 6.424 16 N -0.342 5.342 17 C -0.011 4.011 18 C -0.136 4.136 19 C 0.003 3.997 20 C -0.264 4.264 21 C -0.012 4.012 22 N -0.269 5.269 23 C 0.180 3.820 24 N -0.388 5.388 25 C -0.217 4.217 26 C 0.021 3.979 27 C -0.207 4.207 28 H 0.097 0.903 29 H 0.120 0.880 30 H 0.120 0.880 31 H 0.121 0.879 32 H 0.090 0.910 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.146 0.854 37 H 0.169 0.831 38 H 0.247 0.753 39 H 0.234 0.766 40 H 0.138 0.862 41 H 0.094 0.906 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.846 -3.043 10.542 14.094 hybrid contribution 0.341 0.494 -0.561 0.821 sum 9.187 -2.550 9.981 13.803 Atomic orbital electron populations 1.69637 1.07936 1.30396 1.35086 1.26139 0.94826 1.01587 0.91040 0.86360 0.81115 0.79810 0.79002 1.19710 1.21950 1.16453 1.19485 0.90867 0.95630 1.41371 0.88851 1.17642 0.93400 0.90947 0.89597 1.21179 0.94872 1.03131 1.04391 1.20561 0.93731 0.97307 0.98415 1.20340 0.98474 0.98074 1.03902 1.19385 0.93887 0.96098 1.00520 1.18837 0.82727 0.81649 0.80321 1.90693 1.36236 1.54990 1.60519 1.47881 1.31320 1.44510 1.10485 1.21545 0.93562 0.91176 0.94835 1.20842 0.97143 0.98981 0.96629 1.19445 0.92823 0.93789 0.93602 1.21727 1.02298 1.06585 0.95789 1.22236 0.87995 0.92282 0.98713 1.67190 1.18212 1.27342 1.14150 1.18207 0.86411 0.88793 0.88620 1.42443 1.14690 1.60174 1.21484 1.19925 0.96487 1.06779 0.98528 1.20717 0.89041 1.00527 0.87614 1.21262 0.91273 1.03212 1.04923 0.90256 0.87991 0.88008 0.87937 0.90996 0.88312 0.89229 0.89619 0.85414 0.83078 0.75297 0.76598 0.86210 0.90578 0.87206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -19.91 13.93 55.55 0.77 -19.13 16 2 C 0.08 1.99 5.48 -17.34 -0.09 1.90 16 3 Si 0.91 19.26 24.36 -169.99 -4.14 15.12 16 4 H -0.27 -5.65 6.72 56.52 0.38 -5.27 16 5 H -0.29 -6.04 7.11 56.52 0.40 -5.64 16 6 H -0.24 -5.19 6.51 56.52 0.37 -4.82 16 7 C -0.45 -10.76 9.61 -37.73 -0.36 -11.12 16 8 H 0.09 2.36 8.06 -52.49 -0.42 1.93 16 9 C 0.09 1.99 5.18 -106.87 -0.55 1.44 16 10 C -0.22 -4.84 6.92 -38.81 -0.27 -5.11 16 11 C -0.08 -1.69 10.01 -39.73 -0.40 -2.09 16 12 C -0.19 -3.91 9.67 -38.92 -0.38 -4.28 16 13 C -0.10 -1.98 5.21 -105.04 -0.55 -2.53 16 14 C 0.57 11.13 7.33 -12.31 -0.09 11.04 16 15 O -0.55 -11.78 16.45 5.32 0.09 -11.69 16 16 N -0.61 -9.68 2.94 -175.71 -0.52 -10.20 16 17 C 0.11 1.42 6.45 -3.71 -0.02 1.39 16 18 C -0.10 -1.08 5.91 -28.13 -0.17 -1.25 16 19 C 0.01 0.14 5.76 -104.64 -0.60 -0.46 16 20 C -0.24 -2.72 9.72 -39.30 -0.38 -3.10 16 21 C 0.14 1.71 11.17 -17.63 -0.20 1.51 16 22 N -0.55 -7.87 10.39 -12.40 -0.13 -8.00 16 23 C 0.42 6.09 7.72 -154.99 -1.20 4.89 16 24 N -0.84 -11.06 8.98 31.19 0.28 -10.78 16 25 C -0.21 -2.99 5.82 -104.61 -0.61 -3.60 16 26 C 0.14 2.14 3.69 -5.28 -0.02 2.12 16 27 C -0.19 -3.88 7.12 -38.44 -0.27 -4.15 16 28 H 0.29 6.47 8.30 -40.82 -0.34 6.13 16 29 H 0.10 2.27 4.17 -52.49 -0.22 2.05 16 30 H 0.10 1.81 8.06 -52.48 -0.42 1.39 16 31 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 32 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 1.31 7.06 -51.93 -0.37 0.94 16 34 H 0.09 0.74 8.12 -51.93 -0.42 0.32 16 35 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 37 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.41 5.42 7.06 -40.82 -0.29 5.13 16 39 H 0.40 4.76 8.95 -40.82 -0.37 4.40 16 40 H 0.12 1.99 4.03 -51.93 -0.21 1.78 16 41 H 0.08 1.03 8.03 -51.93 -0.42 0.61 16 42 H 0.11 2.07 6.34 -52.49 -0.33 1.74 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -28.71 338.80 -9.47 -38.18 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -4.77 Total: 14.79 kcal Atomic # 6 Polarization: -7.24 SS G_CDS: -6.16 Total: -13.40 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.41 Total: -48.12 kcal Atomic # 8 Polarization: -11.78 SS G_CDS: 0.09 Total: -11.69 kcal Atomic # 14 Polarization: 19.26 SS G_CDS: -4.14 Total: 15.12 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.71 -9.47 -38.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363508322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.240 kcal (2) G-P(sol) polarization free energy of solvation -28.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds