Wall clock time and date at job start Tue Mar 31 2020 14:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30828 * 1 3 3 Si 1.86803 * 119.99752 * 2 1 4 4 H 1.48499 * 109.46913 * 273.82159 * 3 2 1 5 5 H 1.48500 * 109.47196 * 33.82097 * 3 2 1 6 6 H 1.48505 * 109.47090 * 153.82448 * 3 2 1 7 7 C 1.39942 * 120.00472 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99619 * 347.94764 * 7 2 1 9 9 C 1.41437 * 120.00099 * 167.94097 * 7 2 1 10 10 C 1.40787 * 120.17909 * 330.54116 * 9 7 2 11 11 C 1.37710 * 120.03746 * 180.27596 * 10 9 7 12 12 C 1.38371 * 120.41061 * 359.48674 * 11 10 9 13 13 C 1.39876 * 120.36224 * 0.26060 * 12 11 10 14 14 C 1.47883 * 120.02589 * 180.02562 * 13 12 11 15 15 O 1.21548 * 120.00387 * 316.42854 * 14 13 12 16 16 N 1.34784 * 119.99742 * 136.43164 * 14 13 12 17 17 C 1.47232 * 121.28916 * 184.59266 * 16 14 13 18 18 C 1.52869 * 107.98832 * 115.93150 * 17 16 14 19 19 C 1.50326 * 110.76333 * 47.06580 * 18 17 16 20 20 C 1.39378 * 118.49793 * 160.28353 * 19 18 17 21 21 C 1.37857 * 119.55368 * 179.54016 * 20 19 18 22 22 N 1.31979 * 120.74100 * 359.92184 * 21 20 19 23 23 C 1.32235 * 121.46907 * 0.24974 * 22 21 20 24 24 N 1.39005 * 119.59640 * 180.02562 * 23 22 21 25 25 C 1.37509 * 123.13197 * 340.17670 * 19 18 17 26 26 C 1.46761 * 121.29187 * 4.30680 * 16 14 13 27 27 C 1.39037 * 119.94912 * 359.97438 * 13 12 11 28 28 H 0.96993 * 119.99941 * 359.97438 * 1 2 3 29 29 H 1.07995 * 119.97921 * 0.03854 * 10 9 7 30 30 H 1.08003 * 119.79197 * 179.76995 * 11 10 9 31 31 H 1.08007 * 119.81920 * 180.23730 * 12 11 10 32 32 H 1.08997 * 109.75166 * 235.55207 * 17 16 14 33 33 H 1.08997 * 109.75862 * 356.30894 * 17 16 14 34 34 H 1.09000 * 109.21782 * 167.39612 * 18 17 16 35 35 H 1.09007 * 109.22072 * 286.73145 * 18 17 16 36 36 H 1.08001 * 120.22591 * 359.56160 * 20 19 18 37 37 H 1.07998 * 119.63262 * 179.91602 * 21 20 19 38 38 H 0.96998 * 119.99724 * 179.97438 * 24 23 22 39 39 H 0.96996 * 120.00146 * 359.97438 * 24 23 22 40 40 H 1.09004 * 109.45838 * 344.46997 * 26 16 14 41 41 H 1.08997 * 109.45371 * 104.42856 * 26 16 14 42 42 H 1.07995 * 120.20594 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6178 0.0000 4 1 2.4089 2.0931 -1.3970 5 1 1.4824 2.6280 0.7793 6 1 3.5779 1.4183 0.6176 7 6 2.0081 -1.2119 -0.0005 8 1 1.4860 -2.1370 0.1943 9 6 3.3991 -1.2252 -0.2564 10 6 3.9766 -0.2402 -1.0801 11 6 5.3303 -0.2593 -1.3319 12 6 6.1334 -1.2367 -0.7712 13 6 5.5783 -2.2204 0.0539 14 6 6.4436 -3.2611 0.6498 15 8 7.2962 -3.8029 -0.0262 16 7 6.2866 -3.6090 1.9424 17 6 7.1956 -4.5680 2.5920 18 6 7.9434 -3.8312 3.7032 19 6 6.9923 -3.0210 4.5392 20 6 7.3967 -2.6273 5.8136 21 6 6.5455 -1.8756 6.5951 22 7 5.3541 -1.5240 6.1493 23 6 4.9337 -1.8811 4.9475 24 7 3.6716 -1.4888 4.5170 25 6 5.7420 -2.6472 4.1059 26 6 5.2068 -3.0420 2.7588 27 6 4.2125 -2.2182 0.3143 28 1 -0.4850 0.8400 0.0004 29 1 3.3570 0.5284 -1.5177 30 1 5.7687 0.4961 -1.9673 31 1 7.1946 -1.2403 -0.9720 32 1 6.6206 -5.3905 3.0173 33 1 7.9072 -4.9537 1.8620 34 1 8.4494 -4.5583 4.3384 35 1 8.6847 -3.1675 3.2580 36 1 8.3705 -2.9090 6.1862 37 1 6.8570 -1.5710 7.5833 38 1 3.3575 -1.7472 3.6364 39 1 3.1050 -0.9567 5.0972 40 1 4.7973 -2.1637 2.2598 41 1 4.4205 -3.7857 2.8879 42 1 3.7796 -2.9755 0.9511 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363508322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:38 Heat of formation + Delta-G solvation = 12.008047 kcal Electronic energy + Delta-G solvation = -27243.373508 eV Core-core repulsion = 23572.975542 eV Total energy + Delta-G solvation = -3670.397966 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.00426 -40.80980 -39.19027 -37.61505 -36.11771 -35.53288 -33.92498 -32.57121 -32.34984 -31.42600 -30.02652 -27.40175 -27.00626 -25.57251 -24.30122 -23.15577 -22.55979 -22.21713 -20.49357 -19.33759 -18.41465 -18.04387 -17.91436 -17.32161 -17.26024 -16.68401 -16.57743 -15.95051 -15.87221 -15.77742 -15.35411 -15.08437 -14.97478 -14.55037 -14.48445 -14.27646 -13.91895 -13.88890 -13.44187 -13.35296 -13.23847 -12.99248 -12.65443 -12.62173 -12.30406 -12.25870 -11.69071 -11.61496 -11.57783 -11.23471 -10.85699 -10.48038 -10.25495 -9.82369 -9.61238 -9.53963 -8.88923 -8.71365 -6.54300 0.26306 0.31428 0.52309 0.70792 1.26904 1.40607 1.47381 1.67786 1.90756 2.09509 2.58670 2.63552 2.93201 3.39422 3.44418 3.56158 3.72693 3.87343 4.06506 4.16031 4.21806 4.27770 4.36763 4.40298 4.43622 4.49884 4.63275 4.65270 4.77115 4.80862 4.82012 4.91289 5.04585 5.05944 5.13536 5.32791 5.43119 5.49643 5.60345 5.70910 5.75844 5.83608 6.05255 6.24721 6.30468 6.31377 6.58258 6.61207 6.77875 7.02740 7.32364 8.17897 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012187 B = 0.005142 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.069276 B = 5444.530323 C = 6938.919660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.054 3.946 3 Si 0.957 3.043 4 H -0.263 1.263 5 H -0.284 1.284 6 H -0.247 1.247 7 C -0.467 4.467 8 H 0.068 0.932 9 C 0.073 3.927 10 C -0.230 4.230 11 C -0.082 4.082 12 C -0.187 4.187 13 C -0.106 4.106 14 C 0.571 3.429 15 O -0.573 6.573 16 N -0.601 5.601 17 C 0.105 3.895 18 C -0.090 4.090 19 C 0.004 3.996 20 C -0.232 4.232 21 C 0.137 3.863 22 N -0.571 5.571 23 C 0.403 3.597 24 N -0.846 5.846 25 C -0.230 4.230 26 C 0.149 3.851 27 C -0.177 4.177 28 H 0.294 0.706 29 H 0.102 0.898 30 H 0.134 0.866 31 H 0.115 0.885 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.082 0.918 36 H 0.162 0.838 37 H 0.183 0.817 38 H 0.412 0.588 39 H 0.408 0.592 40 H 0.099 0.901 41 H 0.085 0.915 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.855 -3.348 11.793 17.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.471 5.471 2 C -0.161 4.161 3 Si 0.782 3.218 4 H -0.189 1.189 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.497 4.497 8 H 0.086 0.914 9 C 0.071 3.929 10 C -0.249 4.249 11 C -0.100 4.100 12 C -0.206 4.206 13 C -0.109 4.109 14 C 0.361 3.639 15 O -0.454 6.454 16 N -0.332 5.332 17 C -0.016 4.016 18 C -0.128 4.128 19 C -0.004 4.004 20 C -0.255 4.255 21 C -0.018 4.018 22 N -0.291 5.291 23 C 0.164 3.836 24 N -0.389 5.389 25 C -0.238 4.238 26 C 0.026 3.974 27 C -0.197 4.197 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.152 0.848 31 H 0.133 0.867 32 H 0.110 0.890 33 H 0.113 0.887 34 H 0.145 0.855 35 H 0.100 0.900 36 H 0.180 0.820 37 H 0.200 0.800 38 H 0.244 0.756 39 H 0.238 0.762 40 H 0.117 0.883 41 H 0.103 0.897 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 11.484 -3.087 11.983 16.882 hybrid contribution -0.318 0.396 -0.909 1.041 sum 11.166 -2.691 11.074 15.954 Atomic orbital electron populations 1.69667 1.08907 1.31379 1.37107 1.26662 0.95259 1.03650 0.90573 0.85630 0.79762 0.77140 0.79243 1.18930 1.21144 1.17094 1.19421 0.91689 0.95107 1.43454 0.91387 1.17761 0.93067 0.91995 0.90122 1.21318 0.95827 1.03173 1.04613 1.20878 0.92997 0.97842 0.98325 1.20666 0.99245 0.97692 1.03044 1.19658 0.94026 0.96658 1.00561 1.18617 0.82364 0.81466 0.81411 1.90676 1.37288 1.55986 1.61459 1.47915 1.31609 1.44189 1.09510 1.21842 0.93372 0.91252 0.95181 1.20859 0.96402 0.99350 0.96171 1.19762 0.92379 0.93727 0.94554 1.22071 1.03396 1.05275 0.94753 1.22870 0.87230 0.91700 1.00045 1.67238 1.19623 1.28080 1.14109 1.18385 0.86776 0.89385 0.89097 1.42446 1.14747 1.60319 1.21416 1.19902 0.97637 1.08158 0.98062 1.20615 0.88983 0.99919 0.87885 1.21370 0.91366 1.02708 1.04240 0.89592 0.88000 0.84843 0.86681 0.89020 0.88731 0.85486 0.89959 0.82028 0.79989 0.75622 0.76196 0.88279 0.89679 0.86073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -42.95 13.93 21.83 0.30 -42.64 16 2 C 0.05 2.65 5.48 85.26 0.47 3.11 16 3 Si 0.96 39.76 24.36 68.60 1.67 41.43 16 4 H -0.26 -10.54 6.72 99.48 0.67 -9.87 16 5 H -0.28 -11.32 7.11 99.48 0.71 -10.62 16 6 H -0.25 -10.40 6.51 99.48 0.65 -9.75 16 7 C -0.47 -23.45 9.61 23.47 0.23 -23.22 16 8 H 0.07 3.64 8.06 -2.91 -0.02 3.62 16 9 C 0.07 3.38 5.18 -21.32 -0.11 3.27 16 10 C -0.23 -10.15 6.92 22.77 0.16 -9.99 16 11 C -0.08 -3.26 10.01 22.18 0.22 -3.04 16 12 C -0.19 -7.49 9.67 22.70 0.22 -7.27 16 13 C -0.11 -4.32 5.21 -20.14 -0.10 -4.43 16 14 C 0.57 21.67 7.33 86.80 0.64 22.31 16 15 O -0.57 -24.20 16.45 -3.87 -0.06 -24.27 16 16 N -0.60 -18.36 2.94 -828.09 -2.44 -20.80 16 17 C 0.10 2.42 6.45 86.20 0.56 2.98 16 18 C -0.09 -1.69 5.91 29.69 0.18 -1.51 16 19 C 0.00 0.08 5.76 -19.88 -0.11 -0.03 16 20 C -0.23 -4.36 9.72 22.45 0.22 -4.14 16 21 C 0.14 2.85 11.17 84.58 0.94 3.80 16 22 N -0.57 -15.51 10.39 -193.14 -2.01 -17.52 16 23 C 0.40 11.42 7.72 133.22 1.03 12.45 16 24 N -0.85 -22.53 8.98 -55.23 -0.50 -23.02 16 25 C -0.23 -6.28 5.82 -19.86 -0.12 -6.39 16 26 C 0.15 4.35 3.69 85.44 0.32 4.66 16 27 C -0.18 -7.41 7.12 23.01 0.16 -7.24 16 28 H 0.29 13.55 8.30 -92.71 -0.77 12.78 16 29 H 0.10 4.46 4.17 -2.91 -0.01 4.45 16 30 H 0.13 4.37 8.06 -2.91 -0.02 4.34 16 31 H 0.12 4.32 8.06 -2.91 -0.02 4.29 16 32 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.09 2.31 7.06 -2.39 -0.02 2.29 16 34 H 0.13 1.46 8.12 -2.39 -0.02 1.44 16 35 H 0.08 1.65 8.14 -2.38 -0.02 1.63 16 36 H 0.16 1.90 8.06 -2.91 -0.02 1.88 16 37 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 38 H 0.41 11.22 7.06 -92.71 -0.65 10.57 16 39 H 0.41 9.85 8.95 -92.71 -0.83 9.02 16 40 H 0.10 3.31 4.03 -2.38 -0.01 3.30 16 41 H 0.09 2.28 8.03 -2.39 -0.02 2.27 16 42 H 0.12 4.67 6.34 -2.91 -0.02 4.65 16 Total: -1.00 -62.38 338.80 1.37 -61.01 By element: Atomic # 1 Polarization: 40.98 SS G_CDS: -0.48 Total: 40.50 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: 4.88 Total: -14.69 kcal Atomic # 7 Polarization: -99.35 SS G_CDS: -4.64 Total: -103.98 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.06 Total: -24.27 kcal Atomic # 14 Polarization: 39.76 SS G_CDS: 1.67 Total: 41.43 kcal Total: -62.38 1.37 -61.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363508322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.017 kcal (2) G-P(sol) polarization free energy of solvation -62.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds