Wall clock time and date at job start Tue Mar 31 2020 14:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38058 * 120.33717 * 2 1 4 4 N 1.32032 * 121.15798 * 180.02562 * 3 2 1 5 5 C 1.32329 * 121.62120 * 0.02562 * 4 3 2 6 6 C 1.39712 * 120.28488 * 359.90354 * 5 4 3 7 7 C 1.38650 * 119.36595 * 0.12649 * 6 5 4 8 8 N 1.40101 * 120.11946 * 180.15174 * 6 5 4 9 9 C 1.34772 * 120.65939 * 163.64941 * 8 6 5 10 10 O 1.21634 * 120.00158 * 2.54705 * 9 8 6 11 11 C 1.47385 * 119.99825 * 182.54297 * 9 8 6 12 12 C 1.39249 * 120.29067 * 309.59202 * 11 9 8 13 13 C 1.38193 * 120.09494 * 180.02562 * 12 11 9 14 14 C 1.38845 * 120.67939 * 359.97438 * 13 12 11 15 15 C 1.37576 * 120.57481 * 359.97438 * 14 13 12 16 16 C 1.40715 * 119.88561 * 0.02562 * 15 14 13 17 17 C 1.40870 * 120.33108 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99613 * 153.85601 * 17 16 15 19 19 C 1.40277 * 120.00058 * 333.85969 * 17 16 15 20 20 N 1.30628 * 119.99833 * 344.16196 * 19 17 16 21 21 Si 1.86797 * 119.99954 * 164.15680 * 19 17 16 22 22 H 1.48499 * 109.46903 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47134 * 119.99980 * 21 19 17 24 24 H 1.48498 * 109.47224 * 240.00278 * 21 19 17 25 25 C 1.47115 * 118.68228 * 343.92661 * 8 6 5 26 26 C 1.53149 * 108.33007 * 44.28312 * 25 8 6 27 27 N 1.39505 * 120.11802 * 179.74970 * 5 4 3 28 28 H 1.09003 * 109.46997 * 275.00550 * 1 2 3 29 29 H 1.08998 * 109.47104 * 35.01342 * 1 2 3 30 30 H 1.08999 * 109.47131 * 155.01214 * 1 2 3 31 31 H 1.08004 * 119.42168 * 0.04576 * 3 2 1 32 32 H 1.07997 * 120.87907 * 179.90799 * 7 6 5 33 33 H 1.08005 * 119.94933 * 359.97438 * 12 11 9 34 34 H 1.08004 * 119.66055 * 179.97438 * 13 12 11 35 35 H 1.07999 * 119.70879 * 180.02562 * 14 13 12 36 36 H 1.08005 * 120.05439 * 179.72134 * 15 14 13 37 37 H 0.97003 * 119.99570 * 179.97438 * 20 19 17 38 38 H 1.08996 * 109.73648 * 164.03980 * 25 8 6 39 39 H 1.09000 * 109.72848 * 284.72735 * 25 8 6 40 40 H 1.09003 * 109.76049 * 183.87773 * 26 25 8 41 41 H 1.08997 * 109.55662 * 63.37542 * 26 25 8 42 42 H 0.97003 * 120.53963 * 343.20140 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1915 0.0000 4 7 3.5245 1.2104 -0.0005 5 6 4.2344 0.0937 -0.0015 6 6 3.5942 -1.1481 -0.0001 7 6 2.2086 -1.1988 -0.0002 8 7 4.3491 -2.3283 0.0020 9 6 3.7822 -3.5062 0.3298 10 8 2.5936 -3.5597 0.5826 11 6 4.6024 -4.7297 0.3817 12 6 5.4287 -5.0672 -0.6871 13 6 6.1956 -6.2156 -0.6343 14 6 6.1543 -7.0445 0.4788 15 6 5.3487 -6.7371 1.5507 16 6 4.5577 -5.5737 1.5225 17 6 3.7289 -5.2502 2.6147 18 1 3.4618 -4.2209 2.8035 19 6 3.2508 -6.2648 3.4570 20 7 3.3042 -7.5121 3.0725 21 14 2.5378 -5.8324 5.1286 22 1 2.5909 -4.3613 5.3237 23 1 1.1267 -6.2899 5.1982 24 1 3.3285 -6.5022 6.1923 25 6 5.7745 -2.2553 -0.3546 26 6 6.3898 -1.0510 0.3640 27 7 5.6283 0.1502 -0.0073 28 1 -0.3633 0.0897 1.0238 29 1 -0.3633 0.8417 -0.5896 30 1 -0.3633 -0.9315 -0.4341 31 1 1.6604 2.1246 0.0008 32 1 1.6885 -2.1453 -0.0006 33 1 5.4695 -4.4310 -1.5589 34 1 6.8337 -6.4709 -1.4675 35 1 6.7606 -7.9379 0.5035 36 1 5.3197 -7.3903 2.4104 37 1 2.9739 -8.2138 3.6552 38 1 6.2798 -3.1685 -0.0403 39 1 5.8781 -2.1289 -1.4323 40 1 7.4306 -0.9340 0.0622 41 1 6.3347 -1.2022 1.4420 42 1 6.0873 0.9690 -0.2520 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364391522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:27 Heat of formation + Delta-G solvation = 41.738037 kcal Electronic energy + Delta-G solvation = -27322.933154 eV Core-core repulsion = 23653.824377 eV Total energy + Delta-G solvation = -3669.108777 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.87935 -38.92274 -37.14713 -36.79678 -34.30203 -33.83039 -32.47439 -31.40150 -30.04603 -29.43455 -28.02601 -26.09401 -25.56304 -23.84042 -23.20215 -22.37549 -21.04444 -20.27691 -18.85535 -17.60682 -17.44666 -17.16826 -16.48943 -15.68090 -15.50636 -15.04119 -14.63159 -14.51531 -14.10860 -14.00610 -13.84285 -13.38180 -13.19520 -12.89993 -12.75383 -12.66891 -12.41742 -12.25438 -12.15807 -11.79173 -11.61292 -11.41123 -11.29557 -11.17351 -10.94784 -10.58171 -10.24228 -10.06507 -9.80074 -9.76747 -9.52619 -9.37047 -8.60239 -8.22784 -7.66605 -7.62040 -7.08758 -6.97435 -4.56745 1.51467 1.73792 2.36516 2.68446 3.00312 3.07281 3.10617 3.15935 3.35334 3.65110 3.82826 4.22387 4.44523 4.85271 4.90067 5.02868 5.19155 5.24869 5.32469 5.37825 5.42076 5.52088 5.65480 5.73824 5.81519 5.93080 5.94920 6.08445 6.14591 6.21412 6.30782 6.48467 6.65355 6.73794 6.83839 6.95693 6.97633 7.07852 7.29675 7.38495 7.54304 7.63408 7.75650 7.84831 7.90136 8.04088 8.37411 8.40789 8.63079 8.70537 8.93864 9.95111 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011739 B = 0.005067 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.602923 B = 5524.219725 C = 6924.759742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.169 4.169 3 C 0.100 3.900 4 N -0.520 5.520 5 C 0.357 3.643 6 C 0.070 3.930 7 C -0.080 4.080 8 N -0.553 5.553 9 C 0.585 3.415 10 O -0.516 6.516 11 C -0.265 4.265 12 C -0.058 4.058 13 C -0.247 4.247 14 C -0.091 4.091 15 C -0.156 4.156 16 C 0.148 3.852 17 C -0.426 4.426 18 H 0.082 0.918 19 C 0.077 3.923 20 N -0.776 5.776 21 Si 0.911 3.089 22 H -0.258 1.258 23 H -0.270 1.270 24 H -0.269 1.269 25 C 0.084 3.916 26 C 0.114 3.886 27 N -0.734 5.734 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.149 0.851 32 H 0.176 0.824 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.123 0.877 37 H 0.285 0.715 38 H 0.120 0.880 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.067 0.933 42 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.220 9.672 -3.939 10.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.174 4.174 3 C -0.057 4.057 4 N -0.236 5.236 5 C 0.120 3.880 6 C -0.031 4.031 7 C -0.107 4.107 8 N -0.278 5.278 9 C 0.380 3.620 10 O -0.392 6.392 11 C -0.270 4.270 12 C -0.077 4.077 13 C -0.267 4.267 14 C -0.110 4.110 15 C -0.175 4.175 16 C 0.144 3.856 17 C -0.454 4.454 18 H 0.100 0.900 19 C -0.143 4.143 20 N -0.400 5.400 21 Si 0.735 3.265 22 H -0.181 1.181 23 H -0.195 1.195 24 H -0.194 1.194 25 C -0.040 4.040 26 C -0.012 4.012 27 N -0.372 5.372 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.166 0.834 32 H 0.193 0.807 33 H 0.110 0.890 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.141 0.859 37 H 0.096 0.904 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.115 0.885 41 H 0.085 0.915 42 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 3.036 9.918 -3.665 11.001 hybrid contribution -0.477 -0.373 0.571 0.832 sum 2.560 9.545 -3.094 10.355 Atomic orbital electron populations 1.20553 0.90607 1.02409 1.01933 1.20632 0.97274 0.93392 1.06074 1.22049 0.88326 0.97251 0.98100 1.67101 1.08574 1.28379 1.19564 1.18024 0.85526 0.87740 0.96712 1.18365 0.91873 0.85611 1.07223 1.22302 0.91792 1.00773 0.95868 1.45768 1.09927 1.05683 1.66417 1.18749 0.87365 0.82237 0.73684 1.90503 1.15881 1.85113 1.47731 1.19174 1.09055 0.99890 0.98866 1.20603 0.94818 0.96458 0.95808 1.20252 1.07575 0.98914 0.99922 1.20805 0.98275 0.97565 0.94332 1.21369 0.97683 0.99487 0.99006 1.17337 0.89182 0.89481 0.89606 1.19705 1.23415 0.95110 1.07192 0.89993 1.26021 0.94183 0.94277 0.99838 1.69721 1.33255 1.01047 1.35981 0.86190 0.79152 0.80506 0.80676 1.18143 1.19531 1.19438 1.22442 0.81148 1.00747 0.99668 1.21858 0.95299 0.84185 0.99810 1.44241 1.01276 1.14657 1.76994 0.91587 0.91918 0.91625 0.83414 0.80727 0.88971 0.88956 0.88994 0.85917 0.90366 0.86254 0.91007 0.88489 0.91481 0.76051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.20 10.03 36.01 0.36 -0.84 16 2 C -0.17 -2.65 5.90 -104.44 -0.62 -3.27 16 3 C 0.10 1.49 10.85 -17.53 -0.19 1.30 16 4 N -0.52 -8.59 10.39 -12.16 -0.13 -8.72 16 5 C 0.36 6.06 7.56 -154.37 -1.17 4.89 16 6 C 0.07 1.33 6.33 -83.37 -0.53 0.80 16 7 C -0.08 -1.50 8.71 -39.19 -0.34 -1.85 16 8 N -0.55 -10.56 2.99 -113.87 -0.34 -10.90 16 9 C 0.58 13.29 6.40 -12.54 -0.08 13.21 16 10 O -0.52 -13.07 12.62 5.25 0.07 -13.00 16 11 C -0.27 -6.14 4.94 -104.37 -0.52 -6.65 16 12 C -0.06 -1.18 7.50 -39.22 -0.29 -1.47 16 13 C -0.25 -4.93 10.03 -39.37 -0.39 -5.33 16 14 C -0.09 -1.93 10.01 -39.60 -0.40 -2.33 16 15 C -0.16 -3.76 8.68 -38.89 -0.34 -4.09 16 16 C 0.15 3.75 5.58 -106.54 -0.59 3.15 16 17 C -0.43 -11.15 7.98 -37.82 -0.30 -11.46 16 18 H 0.08 2.22 6.96 -52.49 -0.37 1.86 16 19 C 0.08 1.90 5.17 -17.30 -0.09 1.81 16 20 N -0.78 -19.23 10.94 55.56 0.61 -18.62 16 21 Si 0.91 18.68 29.59 -169.99 -5.03 13.65 16 22 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 23 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 C 0.08 1.24 5.21 -3.63 -0.02 1.22 16 26 C 0.11 1.41 7.24 -3.70 -0.03 1.38 16 27 N -0.73 -9.96 5.85 -59.72 -0.35 -10.31 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 30 H 0.06 0.82 8.06 -51.93 -0.42 0.40 16 31 H 0.15 1.72 8.06 -52.48 -0.42 1.30 16 32 H 0.18 3.66 5.14 -52.73 -0.27 3.39 16 33 H 0.09 1.63 7.14 -52.48 -0.37 1.26 16 34 H 0.09 1.60 8.06 -52.48 -0.42 1.17 16 35 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 36 H 0.12 3.03 6.20 -52.48 -0.33 2.70 16 37 H 0.29 6.35 8.29 -40.82 -0.34 6.02 16 38 H 0.12 1.83 5.22 -51.93 -0.27 1.56 16 39 H 0.07 0.96 8.13 -51.93 -0.42 0.54 16 40 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.40 4.57 8.96 -40.82 -0.37 4.20 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -29.66 342.67 -10.45 -40.10 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -4.91 Total: 12.14 kcal Atomic # 6 Polarization: -3.98 SS G_CDS: -5.53 Total: -9.51 kcal Atomic # 7 Polarization: -48.34 SS G_CDS: -0.21 Total: -48.55 kcal Atomic # 8 Polarization: -13.07 SS G_CDS: 0.07 Total: -13.00 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -5.03 Total: 13.65 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -29.66 -10.45 -40.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364391522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.841 kcal (2) G-P(sol) polarization free energy of solvation -29.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds