Wall clock time and date at job start Tue Mar 31 2020 14:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38058 * 120.33717 * 2 1 4 4 N 1.32032 * 121.15798 * 180.02562 * 3 2 1 5 5 C 1.32329 * 121.62120 * 0.02562 * 4 3 2 6 6 C 1.39712 * 120.28488 * 359.90354 * 5 4 3 7 7 C 1.38650 * 119.36595 * 0.12649 * 6 5 4 8 8 N 1.40101 * 120.11946 * 180.15174 * 6 5 4 9 9 C 1.34772 * 120.65939 * 163.64941 * 8 6 5 10 10 O 1.21634 * 120.00158 * 2.54705 * 9 8 6 11 11 C 1.47385 * 119.99825 * 182.54297 * 9 8 6 12 12 C 1.39249 * 120.29067 * 309.59202 * 11 9 8 13 13 C 1.38193 * 120.09494 * 180.02562 * 12 11 9 14 14 C 1.38845 * 120.67939 * 359.97438 * 13 12 11 15 15 C 1.37576 * 120.57481 * 359.97438 * 14 13 12 16 16 C 1.40715 * 119.88561 * 0.02562 * 15 14 13 17 17 C 1.40870 * 120.33108 * 179.97438 * 16 15 14 18 18 H 1.07995 * 119.99613 * 153.85601 * 17 16 15 19 19 C 1.40277 * 120.00058 * 333.85969 * 17 16 15 20 20 N 1.30628 * 119.99833 * 344.16196 * 19 17 16 21 21 Si 1.86797 * 119.99954 * 164.15680 * 19 17 16 22 22 H 1.48499 * 109.46903 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47134 * 119.99980 * 21 19 17 24 24 H 1.48498 * 109.47224 * 240.00278 * 21 19 17 25 25 C 1.47115 * 118.68228 * 343.92661 * 8 6 5 26 26 C 1.53149 * 108.33007 * 44.28312 * 25 8 6 27 27 N 1.39505 * 120.11802 * 179.74970 * 5 4 3 28 28 H 1.09003 * 109.46997 * 275.00550 * 1 2 3 29 29 H 1.08998 * 109.47104 * 35.01342 * 1 2 3 30 30 H 1.08999 * 109.47131 * 155.01214 * 1 2 3 31 31 H 1.08004 * 119.42168 * 0.04576 * 3 2 1 32 32 H 1.07997 * 120.87907 * 179.90799 * 7 6 5 33 33 H 1.08005 * 119.94933 * 359.97438 * 12 11 9 34 34 H 1.08004 * 119.66055 * 179.97438 * 13 12 11 35 35 H 1.07999 * 119.70879 * 180.02562 * 14 13 12 36 36 H 1.08005 * 120.05439 * 179.72134 * 15 14 13 37 37 H 0.97003 * 119.99570 * 179.97438 * 20 19 17 38 38 H 1.08996 * 109.73648 * 164.03980 * 25 8 6 39 39 H 1.09000 * 109.72848 * 284.72735 * 25 8 6 40 40 H 1.09003 * 109.76049 * 183.87773 * 26 25 8 41 41 H 1.08997 * 109.55662 * 63.37542 * 26 25 8 42 42 H 0.97003 * 120.53963 * 343.20140 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2043 1.1915 0.0000 4 7 3.5245 1.2104 -0.0005 5 6 4.2344 0.0937 -0.0015 6 6 3.5942 -1.1481 -0.0001 7 6 2.2086 -1.1988 -0.0002 8 7 4.3491 -2.3283 0.0020 9 6 3.7822 -3.5062 0.3298 10 8 2.5936 -3.5597 0.5826 11 6 4.6024 -4.7297 0.3817 12 6 5.4287 -5.0672 -0.6871 13 6 6.1956 -6.2156 -0.6343 14 6 6.1543 -7.0445 0.4788 15 6 5.3487 -6.7371 1.5507 16 6 4.5577 -5.5737 1.5225 17 6 3.7289 -5.2502 2.6147 18 1 3.4618 -4.2209 2.8035 19 6 3.2508 -6.2648 3.4570 20 7 3.3042 -7.5121 3.0725 21 14 2.5378 -5.8324 5.1286 22 1 2.5909 -4.3613 5.3237 23 1 1.1267 -6.2899 5.1982 24 1 3.3285 -6.5022 6.1923 25 6 5.7745 -2.2553 -0.3546 26 6 6.3898 -1.0510 0.3640 27 7 5.6283 0.1502 -0.0073 28 1 -0.3633 0.0897 1.0238 29 1 -0.3633 0.8417 -0.5896 30 1 -0.3633 -0.9315 -0.4341 31 1 1.6604 2.1246 0.0008 32 1 1.6885 -2.1453 -0.0006 33 1 5.4695 -4.4310 -1.5589 34 1 6.8337 -6.4709 -1.4675 35 1 6.7606 -7.9379 0.5035 36 1 5.3197 -7.3903 2.4104 37 1 2.9739 -8.2138 3.6552 38 1 6.2798 -3.1685 -0.0403 39 1 5.8781 -2.1289 -1.4323 40 1 7.4306 -0.9340 0.0622 41 1 6.3347 -1.2022 1.4420 42 1 6.0873 0.9690 -0.2520 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364391522.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:26 Heat of formation + Delta-G solvation = 24.570283 kcal Electronic energy + Delta-G solvation = -27323.677604 eV Core-core repulsion = 23653.824377 eV Total energy + Delta-G solvation = -3669.853226 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.26922 -40.44919 -38.76641 -38.18265 -35.83579 -35.48829 -33.67314 -32.81614 -31.78625 -31.02590 -29.27672 -27.50068 -27.14991 -25.28522 -24.37769 -23.94418 -22.76964 -21.67508 -20.34492 -19.20856 -18.82008 -18.59006 -17.97136 -17.36071 -16.94489 -16.56330 -16.11682 -15.81380 -15.61250 -15.44500 -15.16566 -14.75294 -14.57258 -14.46799 -14.25401 -13.96959 -13.84654 -13.66175 -13.51428 -13.22147 -13.03428 -12.91592 -12.81240 -12.60664 -12.50825 -12.26318 -11.80673 -11.60759 -11.53178 -11.15807 -11.02705 -10.90089 -10.14782 -9.64740 -9.38878 -9.36094 -8.77663 -8.34795 -6.45529 0.16718 0.39635 0.66089 0.97127 1.28998 1.42056 1.44078 1.75397 2.02183 2.13025 2.18867 2.64098 2.91895 3.58216 3.61051 3.76244 3.84232 4.04007 4.13055 4.14552 4.22089 4.24330 4.37268 4.41014 4.58227 4.62844 4.80152 4.84125 4.86243 4.92837 5.01263 5.02914 5.10845 5.20010 5.30113 5.39976 5.51748 5.53956 5.72261 5.83135 5.92961 6.06544 6.08803 6.20616 6.33616 6.58069 6.66245 6.79533 6.89085 7.14498 7.27620 8.18269 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011739 B = 0.005067 C = 0.004042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2384.602923 B = 5524.219725 C = 6924.759742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.173 4.173 3 C 0.109 3.891 4 N -0.527 5.527 5 C 0.355 3.645 6 C 0.036 3.964 7 C -0.103 4.103 8 N -0.550 5.550 9 C 0.576 3.424 10 O -0.559 6.559 11 C -0.275 4.275 12 C -0.054 4.054 13 C -0.232 4.232 14 C -0.088 4.088 15 C -0.182 4.182 16 C 0.120 3.880 17 C -0.466 4.466 18 H 0.054 0.946 19 C 0.042 3.958 20 N -0.806 5.806 21 Si 0.972 3.028 22 H -0.272 1.272 23 H -0.265 1.265 24 H -0.248 1.248 25 C 0.076 3.924 26 C 0.119 3.881 27 N -0.722 5.722 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.055 0.945 31 H 0.189 0.811 32 H 0.146 0.854 33 H 0.123 0.877 34 H 0.133 0.867 35 H 0.121 0.879 36 H 0.108 0.892 37 H 0.293 0.707 38 H 0.114 0.886 39 H 0.093 0.907 40 H 0.149 0.851 41 H 0.050 0.950 42 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.865 11.418 -5.315 13.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.178 4.178 3 C -0.048 4.048 4 N -0.243 5.243 5 C 0.117 3.883 6 C -0.065 4.065 7 C -0.131 4.131 8 N -0.274 5.274 9 C 0.371 3.629 10 O -0.438 6.438 11 C -0.280 4.280 12 C -0.073 4.073 13 C -0.251 4.251 14 C -0.106 4.106 15 C -0.201 4.201 16 C 0.116 3.884 17 C -0.494 4.494 18 H 0.072 0.928 19 C -0.175 4.175 20 N -0.431 5.431 21 Si 0.793 3.207 22 H -0.197 1.197 23 H -0.189 1.189 24 H -0.172 1.172 25 C -0.046 4.046 26 C -0.007 4.007 27 N -0.360 5.360 28 H 0.091 0.909 29 H 0.113 0.887 30 H 0.074 0.926 31 H 0.206 0.794 32 H 0.163 0.837 33 H 0.140 0.860 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.126 0.874 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.112 0.888 40 H 0.166 0.834 41 H 0.069 0.931 42 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 4.751 11.689 -5.065 13.597 hybrid contribution -0.917 -0.816 0.797 1.464 sum 3.834 10.873 -4.268 12.294 Atomic orbital electron populations 1.20608 0.88345 1.03342 1.02907 1.20949 0.98975 0.92537 1.05353 1.22703 0.88087 0.98347 0.95687 1.67264 1.09299 1.27789 1.19929 1.18193 0.86981 0.87021 0.96074 1.18596 0.92158 0.86223 1.09505 1.22225 0.92508 1.00961 0.97402 1.45692 1.11536 1.04760 1.65396 1.18826 0.86907 0.83424 0.73747 1.90490 1.17566 1.86043 1.49741 1.19451 1.09333 1.00014 0.99175 1.20911 0.93701 0.96999 0.95645 1.20732 1.06612 0.97561 1.00194 1.21167 0.97276 0.98542 0.93611 1.21322 0.99269 0.99537 1.00007 1.17659 0.89624 0.90726 0.90350 1.19627 1.25983 0.94249 1.09585 0.92808 1.26654 0.94264 0.94046 1.02578 1.69732 1.34557 1.01625 1.37212 0.85319 0.78882 0.79301 0.77242 1.19660 1.18948 1.17188 1.22736 0.78796 1.01813 1.01249 1.21983 0.97396 0.82656 0.98625 1.44281 1.00004 1.15669 1.76049 0.90895 0.88653 0.92605 0.79436 0.83723 0.85959 0.84876 0.86082 0.87444 0.89544 0.86807 0.88849 0.83355 0.93148 0.74389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.24 10.03 71.24 0.71 -1.53 16 2 C -0.17 -5.38 5.90 -19.75 -0.12 -5.50 16 3 C 0.11 3.02 10.85 84.62 0.92 3.94 16 4 N -0.53 -16.38 10.39 -192.38 -2.00 -18.38 16 5 C 0.36 11.68 7.56 133.05 1.01 12.68 16 6 C 0.04 1.38 6.33 38.27 0.24 1.62 16 7 C -0.10 -4.07 8.71 22.53 0.20 -3.88 16 8 N -0.55 -21.47 2.99 -632.41 -1.89 -23.36 16 9 C 0.58 27.59 6.40 86.65 0.55 28.15 16 10 O -0.56 -30.64 12.62 -4.14 -0.05 -30.69 16 11 C -0.28 -13.11 4.94 -19.70 -0.10 -13.21 16 12 C -0.05 -2.11 7.50 22.50 0.17 -1.94 16 13 C -0.23 -8.57 10.03 22.40 0.22 -8.35 16 14 C -0.09 -3.59 10.01 22.26 0.22 -3.37 16 15 C -0.18 -8.99 8.68 22.72 0.20 -8.79 16 16 C 0.12 6.38 5.58 -21.10 -0.12 6.26 16 17 C -0.47 -26.18 7.98 23.41 0.19 -25.99 16 18 H 0.05 3.20 6.96 -2.91 -0.02 3.18 16 19 C 0.04 2.17 5.17 85.37 0.44 2.61 16 20 N -0.81 -41.84 10.94 21.88 0.24 -41.60 16 21 Si 0.97 40.30 29.59 68.60 2.03 42.33 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 24 H -0.25 -9.33 7.11 99.48 0.71 -8.62 16 25 C 0.08 2.15 5.21 86.31 0.45 2.60 16 26 C 0.12 2.65 7.24 86.34 0.63 3.27 16 27 N -0.72 -17.91 5.85 -342.85 -2.00 -19.92 16 28 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.09 1.62 8.12 -2.39 -0.02 1.60 16 30 H 0.05 1.42 8.06 -2.39 -0.02 1.40 16 31 H 0.19 3.62 8.06 -2.91 -0.02 3.60 16 32 H 0.15 6.62 5.14 -6.77 -0.03 6.59 16 33 H 0.12 4.00 7.14 -2.91 -0.02 3.98 16 34 H 0.13 3.90 8.06 -2.91 -0.02 3.87 16 35 H 0.12 4.21 8.06 -2.91 -0.02 4.18 16 36 H 0.11 5.55 6.20 -2.91 -0.02 5.53 16 37 H 0.29 13.59 8.29 -92.71 -0.77 12.82 16 38 H 0.11 3.33 5.22 -2.39 -0.01 3.32 16 39 H 0.09 2.23 8.13 -2.39 -0.02 2.22 16 40 H 0.15 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.42 8.12 8.96 -92.71 -0.83 7.29 16 Total: -1.00 -70.68 342.67 2.37 -68.30 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: 0.23 Total: 34.75 kcal Atomic # 6 Polarization: -17.25 SS G_CDS: 5.82 Total: -11.43 kcal Atomic # 7 Polarization: -97.61 SS G_CDS: -5.65 Total: -103.26 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -0.05 Total: -30.69 kcal Atomic # 14 Polarization: 40.30 SS G_CDS: 2.03 Total: 42.33 kcal Total: -70.68 2.37 -68.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364391522.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.875 kcal (2) G-P(sol) polarization free energy of solvation -70.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds