Wall clock time and date at job start Tue Mar 31 2020 13:29:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30739 * 1 3 3 Si 1.86809 * 120.00112 * 2 1 4 4 H 1.48499 * 109.46855 * 274.99721 * 3 2 1 5 5 H 1.48493 * 109.47103 * 34.99833 * 3 2 1 6 6 H 1.48499 * 109.46987 * 155.00191 * 3 2 1 7 7 C 1.40026 * 120.00188 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00259 * 187.95898 * 7 2 1 9 9 C 1.41552 * 119.99706 * 7.94964 * 7 2 1 10 10 C 1.41163 * 120.99679 * 206.87731 * 9 7 2 11 11 C 1.36591 * 119.12479 * 179.97438 * 10 9 7 12 12 N 1.32068 * 121.25902 * 359.97438 * 11 10 9 13 13 C 1.32482 * 122.23124 * 0.02562 * 12 11 10 14 14 N 1.39463 * 119.64743 * 180.02562 * 13 12 11 15 15 C 1.34785 * 119.99723 * 198.58917 * 14 13 12 16 16 O 1.21575 * 120.00077 * 5.95304 * 15 14 13 17 17 N 1.34774 * 119.99768 * 185.94996 * 15 14 13 18 18 C 1.47236 * 121.34697 * 174.94581 * 17 15 14 19 19 C 1.52788 * 107.89908 * 115.40249 * 18 17 15 20 20 C 1.50595 * 110.86127 * 47.41159 * 19 18 17 21 21 C 1.38978 * 117.61576 * 160.31923 * 20 19 18 22 22 C 1.37907 * 120.59045 * 179.60529 * 21 20 19 23 23 C 1.38265 * 119.82376 * 359.95666 * 22 21 20 24 24 C 1.37962 * 119.71907 * 0.19384 * 23 22 21 25 25 C 1.37672 * 122.87290 * 340.24358 * 20 19 18 26 26 C 1.46690 * 121.35217 * 354.66053 * 17 15 14 27 27 C 1.38642 * 120.70383 * 0.27049 * 13 12 11 28 28 H 0.97000 * 119.99856 * 359.97438 * 1 2 3 29 29 H 1.08001 * 120.43589 * 0.02562 * 10 9 7 30 30 H 1.08004 * 119.36880 * 180.02562 * 11 10 9 31 31 H 0.96992 * 120.00213 * 18.58844 * 14 13 12 32 32 H 1.09008 * 109.77491 * 235.00202 * 18 17 15 33 33 H 1.08999 * 109.77809 * 355.80073 * 18 17 15 34 34 H 1.08996 * 109.20251 * 167.76975 * 19 18 17 35 35 H 1.09003 * 109.19665 * 287.10535 * 19 18 17 36 36 H 1.07997 * 119.70827 * 359.58720 * 21 20 19 37 37 H 1.07998 * 120.09019 * 179.97438 * 22 21 20 38 38 H 1.07998 * 120.14125 * 180.17220 * 23 22 21 39 39 H 1.07994 * 119.75009 * 179.97438 * 24 23 22 40 40 H 1.09008 * 109.43672 * 344.68707 * 26 17 15 41 41 H 1.08993 * 109.43716 * 104.56088 * 26 17 15 42 42 H 1.08001 * 120.66325 * 179.70747 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6178 0.0000 4 1 2.3833 2.1074 -1.3948 5 1 1.4958 2.6199 0.8030 6 1 3.5879 1.4120 0.5917 7 6 2.0076 -1.2126 -0.0005 8 1 3.0797 -1.2172 0.1290 9 6 1.3100 -2.4325 -0.1706 10 6 1.8164 -3.6394 0.3582 11 6 1.1115 -4.7944 0.1719 12 7 -0.0307 -4.8008 -0.4911 13 6 -0.5533 -3.6991 -1.0089 14 7 -1.7635 -3.7677 -1.6987 15 6 -2.1196 -2.7728 -2.5353 16 8 -1.3409 -1.8698 -2.7723 17 7 -3.3390 -2.7791 -3.1093 18 6 -3.8006 -1.6543 -3.9397 19 6 -3.9851 -2.1688 -5.3665 20 6 -4.7568 -3.4620 -5.3747 21 6 -5.3654 -3.8414 -6.5652 22 6 -6.0805 -5.0180 -6.6438 23 6 -6.1938 -5.8296 -5.5302 24 6 -5.5934 -5.4540 -4.3462 25 6 -4.8769 -4.2675 -4.2648 26 6 -4.2578 -3.9096 -2.9370 27 6 0.0925 -2.4794 -0.8767 28 1 -0.4850 0.8401 0.0004 29 1 2.7485 -3.6492 0.9036 30 1 1.4951 -5.7200 0.5751 31 1 -2.3488 -4.5314 -1.5763 32 1 -4.7498 -1.2788 -3.5575 33 1 -3.0566 -0.8578 -3.9282 34 1 -4.5275 -1.4240 -5.9488 35 1 -3.0065 -2.3333 -5.8176 36 1 -5.2778 -3.2092 -7.4363 37 1 -6.5505 -5.3048 -7.5729 38 1 -6.7503 -6.7534 -5.5868 39 1 -5.6819 -6.0873 -3.4760 40 1 -3.7085 -4.7678 -2.5497 41 1 -5.0431 -3.6347 -2.2329 42 1 -0.3318 -1.5824 -1.3031 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365517502.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:29:15 Heat of formation + Delta-G solvation = 45.887636 kcal Electronic energy + Delta-G solvation = -26506.482443 eV Core-core repulsion = 22837.553607 eV Total energy + Delta-G solvation = -3668.928837 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.64631 -39.43798 -37.97661 -35.94602 -34.46946 -33.72178 -32.86135 -31.44743 -30.45175 -29.56444 -28.23961 -25.89025 -25.69389 -23.94161 -22.43912 -22.11550 -21.44125 -20.53989 -18.98981 -18.22806 -17.35142 -16.84834 -15.92616 -15.85474 -15.33268 -15.05671 -14.86198 -14.70848 -14.57688 -14.16206 -13.77421 -13.75888 -13.33494 -13.22984 -12.78692 -12.71864 -12.50027 -12.36962 -12.20123 -12.12097 -11.63998 -11.31887 -11.20713 -11.12418 -10.88175 -10.79916 -10.38504 -10.10029 -9.72961 -9.30152 -8.99839 -8.99228 -8.74299 -8.48424 -8.02986 -7.80871 -6.91954 -6.62405 -4.48328 1.16238 1.19621 2.70939 2.83128 2.95361 3.11126 3.14526 3.28643 3.54740 3.74344 3.97124 4.18112 4.48391 4.56890 4.73480 4.79694 4.83738 5.01243 5.08904 5.21384 5.25719 5.39905 5.45590 5.51399 5.77347 5.78118 5.80091 5.86868 5.94540 6.03722 6.24732 6.31650 6.41442 6.50288 6.58168 6.77866 6.82978 6.87803 7.09453 7.21921 7.30803 7.56896 7.68878 8.01621 8.18880 8.45408 8.62284 8.87422 8.95874 9.11595 9.61994 10.24728 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017781 B = 0.003364 C = 0.002925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.317588 B = 8322.066092 C = 9569.405868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.780 5.780 2 C 0.074 3.926 3 Si 0.915 3.085 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.451 4.451 8 H 0.080 0.920 9 C 0.131 3.869 10 C -0.285 4.285 11 C 0.118 3.882 12 N -0.605 5.605 13 C 0.332 3.668 14 N -0.662 5.662 15 C 0.711 3.289 16 O -0.545 6.545 17 N -0.632 5.632 18 C 0.132 3.868 19 C -0.100 4.100 20 C -0.063 4.063 21 C -0.122 4.122 22 C -0.121 4.121 23 C -0.124 4.124 24 C -0.113 4.113 25 C -0.093 4.093 26 C 0.152 3.848 27 C -0.215 4.215 28 H 0.280 0.720 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.394 0.606 32 H 0.070 0.930 33 H 0.103 0.897 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.121 0.879 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.124 0.876 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.088 -4.992 -9.921 17.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.406 5.406 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.482 4.482 8 H 0.098 0.902 9 C 0.123 3.877 10 C -0.309 4.309 11 C -0.036 4.036 12 N -0.325 5.325 13 C 0.110 3.890 14 N -0.310 5.310 15 C 0.412 3.588 16 O -0.419 6.419 17 N -0.371 5.371 18 C 0.009 3.991 19 C -0.138 4.138 20 C -0.063 4.063 21 C -0.140 4.140 22 C -0.139 4.139 23 C -0.142 4.142 24 C -0.131 4.131 25 C -0.094 4.094 26 C 0.028 3.972 27 C -0.239 4.239 28 H 0.091 0.909 29 H 0.119 0.881 30 H 0.140 0.860 31 H 0.230 0.770 32 H 0.089 0.911 33 H 0.121 0.879 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.139 0.861 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.106 0.894 41 H 0.099 0.901 42 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -14.182 -4.921 -10.190 18.144 hybrid contribution 0.367 0.809 0.169 0.904 sum -13.815 -4.112 -10.021 17.555 Atomic orbital electron populations 1.69738 1.07500 1.29091 1.34232 1.25958 0.94877 1.01397 0.92321 0.86195 0.80303 0.80440 0.79132 1.19304 1.20211 1.18598 1.19582 0.95302 0.89978 1.43355 0.90175 1.17831 0.91193 0.92231 0.86470 1.21638 1.03880 0.94899 1.10529 1.21183 0.90153 0.96548 0.95708 1.66515 1.16088 1.29494 1.20450 1.17866 0.86090 0.90857 0.94221 1.42304 1.20989 1.22883 1.44872 1.15564 0.81336 0.82838 0.79022 1.90923 1.49424 1.37158 1.64422 1.47182 1.14955 1.20523 1.54462 1.21413 1.00526 0.89017 0.88132 1.20903 1.00366 0.94120 0.98393 1.19551 0.97462 0.96437 0.92881 1.21186 0.98248 0.97271 0.97263 1.21066 0.99364 0.94888 0.98543 1.21039 1.00265 0.99800 0.93114 1.21052 0.97749 0.95947 0.98383 1.19827 0.99168 0.95163 0.95232 1.20395 0.93148 0.89726 0.93953 1.22948 0.99253 0.97740 1.03968 0.90872 0.88115 0.86007 0.76989 0.91146 0.87903 0.89677 0.89874 0.86122 0.86182 0.86022 0.85783 0.89388 0.90131 0.80498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.07 10.66 55.55 0.59 -20.47 16 2 C 0.07 1.92 5.34 -17.35 -0.09 1.83 16 3 Si 0.91 19.33 29.57 -169.99 -5.03 14.30 16 4 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 7 C -0.45 -12.37 9.14 -37.65 -0.34 -12.72 16 8 H 0.08 2.08 7.86 -52.49 -0.41 1.67 16 9 C 0.13 3.69 5.60 -106.55 -0.60 3.09 16 10 C -0.29 -7.21 9.85 -39.07 -0.38 -7.59 16 11 C 0.12 2.79 11.10 -18.04 -0.20 2.59 16 12 N -0.60 -14.91 10.36 -12.76 -0.13 -15.04 16 13 C 0.33 8.43 7.52 -154.68 -1.16 7.27 16 14 N -0.66 -13.85 5.33 -15.86 -0.08 -13.93 16 15 C 0.71 14.61 8.17 -86.91 -0.71 13.90 16 16 O -0.55 -13.49 12.65 5.30 0.07 -13.42 16 17 N -0.63 -9.74 2.93 -180.11 -0.53 -10.26 16 18 C 0.13 1.73 6.43 -3.75 -0.02 1.71 16 19 C -0.10 -1.11 5.86 -28.04 -0.16 -1.27 16 20 C -0.06 -0.71 5.76 -104.61 -0.60 -1.32 16 21 C -0.12 -1.20 9.59 -39.43 -0.38 -1.57 16 22 C -0.12 -1.08 10.04 -39.69 -0.40 -1.48 16 23 C -0.12 -1.11 10.05 -39.67 -0.40 -1.51 16 24 C -0.11 -1.10 9.62 -39.46 -0.38 -1.48 16 25 C -0.09 -1.06 5.82 -104.55 -0.61 -1.67 16 26 C 0.15 1.82 6.08 -5.04 -0.03 1.79 16 27 C -0.21 -6.03 7.49 -38.46 -0.29 -6.32 16 28 H 0.28 6.93 8.29 -40.82 -0.34 6.59 16 29 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 30 H 0.12 2.42 8.06 -52.48 -0.42 1.99 16 31 H 0.39 6.88 6.48 -40.82 -0.26 6.61 16 32 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 33 H 0.10 1.53 7.10 -51.93 -0.37 1.16 16 34 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 35 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.12 0.96 8.05 -52.49 -0.42 0.54 16 37 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.12 0.97 8.05 -52.49 -0.42 0.55 16 40 H 0.09 1.01 5.96 -51.92 -0.31 0.70 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.18 5.21 3.38 -52.50 -0.18 5.03 16 LS Contribution 346.23 15.07 5.22 5.22 Total: -1.00 -33.11 346.23 -11.55 -44.66 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -4.89 Total: 13.71 kcal Atomic # 6 Polarization: 2.01 SS G_CDS: -6.77 Total: -4.76 kcal Atomic # 7 Polarization: -59.56 SS G_CDS: -0.15 Total: -59.71 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: 0.07 Total: -13.42 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.03 Total: 14.30 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -33.11 -11.55 -44.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365517502.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.550 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds