Wall clock time and date at job start Tue Mar 31 2020 14:03:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86802 * 119.99982 * 2 1 4 4 H 1.48499 * 109.47303 * 240.00464 * 3 2 1 5 5 H 1.48511 * 109.46676 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47194 * 119.99745 * 3 2 1 7 7 C 1.40273 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99886 * 169.36635 * 7 2 1 9 9 C 1.40885 * 120.00282 * 349.36313 * 7 2 1 10 10 C 1.40708 * 120.32488 * 331.96849 * 9 7 2 11 11 C 1.37599 * 119.88157 * 179.97438 * 10 9 7 12 12 C 1.38834 * 120.56883 * 0.02562 * 11 10 9 13 13 C 1.38220 * 120.67553 * 359.71765 * 12 11 10 14 14 C 1.39227 * 120.09145 * 0.56294 * 13 12 11 15 15 C 1.47435 * 120.28542 * 179.72305 * 14 13 12 16 16 O 1.21598 * 120.00530 * 133.97374 * 15 14 13 17 17 N 1.34786 * 119.99454 * 313.97876 * 15 14 13 18 18 C 1.47223 * 121.29641 * 174.77175 * 17 15 14 19 19 C 1.52874 * 107.98254 * 115.87590 * 18 17 15 20 20 C 1.50327 * 110.76490 * 47.00176 * 19 18 17 21 21 C 1.39374 * 118.48898 * 160.81411 * 20 19 18 22 22 C 1.37862 * 119.55504 * 179.83540 * 21 20 19 23 23 N 1.31971 * 120.74083 * 359.50624 * 22 21 20 24 24 C 1.32236 * 121.47061 * 0.43824 * 23 22 21 25 25 N 1.38998 * 119.59769 * 180.02562 * 24 23 22 26 26 C 1.37509 * 123.14076 * 340.53591 * 20 19 18 27 27 C 1.46758 * 121.30135 * 354.79434 * 17 15 14 28 28 H 0.96994 * 120.00183 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.06028 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.71929 * 179.97438 * 11 10 9 31 31 H 1.07994 * 119.65991 * 180.02562 * 12 11 10 32 32 H 1.07998 * 119.95882 * 180.27968 * 13 12 11 33 33 H 1.08994 * 109.76068 * 356.24993 * 18 17 15 34 34 H 1.09007 * 109.75823 * 235.48816 * 18 17 15 35 35 H 1.09001 * 109.21641 * 286.67255 * 19 18 17 36 36 H 1.08998 * 109.18538 * 167.31719 * 19 18 17 37 37 H 1.08005 * 120.22547 * 359.61348 * 21 20 19 38 38 H 1.08002 * 119.62580 * 179.74728 * 22 21 20 39 39 H 0.97006 * 119.99755 * 179.97438 * 25 24 23 40 40 H 0.96998 * 120.00001 * 359.97438 * 25 24 23 41 41 H 1.08999 * 109.46108 * 344.39207 * 27 17 15 42 42 H 1.08992 * 109.46301 * 104.35379 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0939 1.6965 -1.2125 5 1 1.2751 2.7465 0.0006 6 1 3.0940 1.6965 1.2125 7 6 2.0077 -1.2148 -0.0005 8 1 3.0738 -1.2227 -0.1731 9 6 1.3215 -2.4245 0.2241 10 6 0.1462 -2.4416 0.9976 11 6 -0.5170 -3.6283 1.2108 12 6 -0.0365 -4.8128 0.6692 13 6 1.1128 -4.8221 -0.0986 14 6 1.8091 -3.6383 -0.3271 15 6 3.0389 -3.6442 -1.1403 16 8 3.2013 -2.8031 -2.0033 17 7 3.9832 -4.5821 -0.9272 18 6 5.1680 -4.6855 -1.7949 19 6 6.4026 -4.3813 -0.9462 20 6 6.3578 -5.1400 0.3508 21 6 7.5448 -5.3150 1.0599 22 6 7.5284 -6.0043 2.2537 23 7 6.4007 -6.4910 2.7362 24 6 5.2545 -6.3444 2.0933 25 7 4.0896 -6.8725 2.6375 26 6 5.2001 -5.6654 0.8748 27 6 3.8701 -5.5404 0.1786 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2352 -1.5249 1.4225 30 1 -1.4186 -3.6384 1.8052 31 1 -0.5689 -5.7357 0.8455 32 1 1.4737 -5.7495 -0.5180 33 1 5.0931 -3.9640 -2.6084 34 1 5.2400 -5.6943 -2.2017 35 1 6.4387 -3.3125 -0.7357 36 1 7.2970 -4.6683 -1.4992 37 1 8.4719 -4.9164 0.6750 38 1 8.4483 -6.1441 2.8022 39 1 3.2455 -6.7680 2.1710 40 1 4.1207 -7.3455 3.4838 41 1 3.1205 -5.1897 0.8878 42 1 3.5724 -6.5131 -0.2128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412438504.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:49 Heat of formation + Delta-G solvation = 25.218938 kcal Electronic energy + Delta-G solvation = -27306.543829 eV Core-core repulsion = 23636.718731 eV Total energy + Delta-G solvation = -3669.825099 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.70584 -39.08163 -37.12225 -35.89187 -35.08291 -33.81638 -32.47815 -31.02761 -30.01501 -29.61350 -28.80215 -25.99509 -25.34641 -24.13804 -22.33518 -22.05381 -21.03975 -20.54129 -18.64362 -17.54686 -17.24994 -16.88299 -16.16532 -15.86502 -15.31797 -15.23611 -14.89540 -14.77951 -14.45820 -14.21657 -13.86138 -13.63445 -13.29142 -13.08027 -12.71966 -12.60203 -12.39513 -12.06578 -11.99793 -11.70215 -11.50893 -11.17726 -11.16138 -11.02440 -10.87431 -10.64761 -10.53532 -10.00323 -9.74912 -9.44060 -9.31294 -9.15403 -8.74999 -8.18999 -7.73629 -7.57938 -7.50498 -6.85348 -4.48319 1.34009 1.52697 2.41806 2.76946 3.03576 3.08384 3.19007 3.48708 3.58051 3.87486 3.89975 3.95278 4.54516 4.59509 4.74507 4.95632 5.10914 5.17867 5.35801 5.48476 5.51237 5.55656 5.64904 5.67014 5.79801 5.84907 5.98633 6.00851 6.12957 6.19434 6.28955 6.50111 6.53209 6.68486 6.91841 6.98057 7.06427 7.17364 7.29164 7.39731 7.49646 7.61270 7.81967 7.91772 8.05863 8.16807 8.30152 8.50373 8.73209 8.79810 9.15524 10.06638 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012615 B = 0.004702 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.066834 B = 5952.895678 C = 6780.579289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.075 3.925 3 Si 0.914 3.086 4 H -0.261 1.261 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.424 4.424 8 H 0.081 0.919 9 C 0.146 3.854 10 C -0.155 4.155 11 C -0.094 4.094 12 C -0.248 4.248 13 C -0.062 4.062 14 C -0.259 4.259 15 C 0.586 3.414 16 O -0.534 6.534 17 N -0.622 5.622 18 C 0.114 3.886 19 C -0.100 4.100 20 C 0.015 3.985 21 C -0.237 4.237 22 C 0.140 3.860 23 N -0.551 5.551 24 C 0.415 3.585 25 N -0.849 5.849 26 C -0.205 4.205 27 C 0.163 3.837 28 H 0.284 0.716 29 H 0.125 0.875 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.064 0.936 35 H 0.088 0.912 36 H 0.086 0.914 37 H 0.128 0.872 38 H 0.152 0.848 39 H 0.410 0.590 40 H 0.403 0.597 41 H 0.104 0.896 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.356 -9.886 2.745 13.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.144 4.144 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.452 4.452 8 H 0.099 0.901 9 C 0.142 3.858 10 C -0.174 4.174 11 C -0.113 4.113 12 C -0.268 4.268 13 C -0.081 4.081 14 C -0.264 4.264 15 C 0.379 3.621 16 O -0.410 6.410 17 N -0.358 5.358 18 C -0.010 4.010 19 C -0.138 4.138 20 C 0.007 3.993 21 C -0.260 4.260 22 C -0.016 4.016 23 N -0.270 5.270 24 C 0.175 3.825 25 N -0.393 5.393 26 C -0.213 4.213 27 C 0.039 3.961 28 H 0.095 0.905 29 H 0.143 0.857 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.083 0.917 35 H 0.106 0.894 36 H 0.104 0.896 37 H 0.146 0.854 38 H 0.169 0.831 39 H 0.242 0.758 40 H 0.232 0.768 41 H 0.122 0.878 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 9.241 -9.647 3.004 13.692 hybrid contribution 0.045 0.940 -0.572 1.101 sum 9.286 -8.707 2.432 12.960 Atomic orbital electron populations 1.69681 1.07679 1.29720 1.34005 1.26005 0.94830 1.01637 0.91959 0.86256 0.80147 0.79564 0.80270 1.18571 1.20113 1.18736 1.19639 0.96396 0.90212 1.38957 0.90095 1.17387 0.90615 0.90723 0.87090 1.21448 0.97897 0.96904 1.01139 1.20808 0.98080 0.93375 0.99039 1.20257 1.00538 0.96878 1.09093 1.20619 0.95525 0.95065 0.96895 1.19360 1.00166 0.95525 1.11349 1.18531 0.82540 0.78354 0.82631 1.90686 1.79200 1.36742 1.34418 1.48071 1.22698 1.34464 1.30522 1.21431 0.83955 1.01900 0.93672 1.20862 0.99304 1.00632 0.92978 1.19507 0.91737 0.92710 0.95304 1.21772 0.98508 1.07078 0.98646 1.22208 0.94792 0.91894 0.92664 1.67144 0.98002 1.26443 1.35382 1.18184 0.87011 0.89244 0.88040 1.42302 1.06728 1.62869 1.27392 1.20082 0.97043 1.06754 0.97415 1.20275 0.93748 0.92738 0.89329 0.90476 0.85699 0.89130 0.89100 0.89051 0.88485 0.91736 0.89406 0.89586 0.85384 0.83108 0.75832 0.76827 0.87778 0.91610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.05 10.78 55.56 0.60 -19.45 16 2 C 0.07 1.89 5.26 -17.30 -0.09 1.80 16 3 Si 0.91 19.25 29.57 -169.99 -5.03 14.23 16 4 H -0.26 -5.63 7.11 56.52 0.40 -5.23 16 5 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 6 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.42 -11.43 7.87 -37.82 -0.30 -11.73 16 8 H 0.08 2.24 6.89 -52.48 -0.36 1.88 16 9 C 0.15 3.81 5.58 -106.54 -0.59 3.22 16 10 C -0.15 -3.84 8.66 -38.88 -0.34 -4.18 16 11 C -0.09 -2.06 10.01 -39.59 -0.40 -2.45 16 12 C -0.25 -5.02 10.03 -39.37 -0.39 -5.41 16 13 C -0.06 -1.28 7.66 -39.22 -0.30 -1.58 16 14 C -0.26 -6.15 4.93 -104.37 -0.51 -6.67 16 15 C 0.59 13.39 6.64 -12.51 -0.08 13.31 16 16 O -0.53 -13.95 15.06 5.28 0.08 -13.87 16 17 N -0.62 -11.21 2.94 -175.64 -0.52 -11.73 16 18 C 0.11 1.69 6.43 -3.71 -0.02 1.67 16 19 C -0.10 -1.31 5.90 -28.13 -0.17 -1.47 16 20 C 0.02 0.21 5.77 -104.65 -0.60 -0.39 16 21 C -0.24 -2.89 9.72 -39.30 -0.38 -3.27 16 22 C 0.14 1.72 11.17 -17.63 -0.20 1.52 16 23 N -0.55 -7.82 10.39 -12.40 -0.13 -7.95 16 24 C 0.41 5.88 7.72 -154.99 -1.20 4.68 16 25 N -0.85 -9.67 8.98 31.19 0.28 -9.39 16 26 C -0.21 -3.05 5.83 -104.41 -0.61 -3.66 16 27 C 0.16 2.52 3.77 -5.08 -0.02 2.50 16 28 H 0.28 6.58 8.29 -40.82 -0.34 6.24 16 29 H 0.13 3.19 6.15 -52.49 -0.32 2.87 16 30 H 0.09 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.09 1.58 8.06 -52.49 -0.42 1.15 16 32 H 0.09 1.61 7.01 -52.49 -0.37 1.24 16 33 H 0.10 1.56 7.09 -51.93 -0.37 1.19 16 34 H 0.06 0.82 8.14 -51.92 -0.42 0.40 16 35 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 36 H 0.09 0.86 8.12 -51.93 -0.42 0.44 16 37 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 38 H 0.15 1.37 8.06 -52.49 -0.42 0.94 16 39 H 0.41 4.31 7.07 -40.82 -0.29 4.02 16 40 H 0.40 3.90 8.95 -40.82 -0.37 3.53 16 41 H 0.10 1.74 4.91 -51.93 -0.25 1.49 16 42 H 0.07 0.88 7.97 -51.93 -0.41 0.47 16 LS Contribution 342.97 15.07 5.17 5.17 Total: -1.00 -31.07 342.97 -10.59 -41.65 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: -4.84 Total: 13.45 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: -6.21 Total: -12.10 kcal Atomic # 7 Polarization: -48.76 SS G_CDS: 0.23 Total: -48.52 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: 0.08 Total: -13.87 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.23 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.07 -10.59 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412438504.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.871 kcal (2) G-P(sol) polarization free energy of solvation -31.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.653 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds