Wall clock time and date at job start Tue Mar 31 2020 14:03:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30627 * 1 3 3 Si 1.86802 * 119.99982 * 2 1 4 4 H 1.48499 * 109.47303 * 240.00464 * 3 2 1 5 5 H 1.48511 * 109.46676 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47194 * 119.99745 * 3 2 1 7 7 C 1.40273 * 120.00087 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99886 * 169.36635 * 7 2 1 9 9 C 1.40885 * 120.00282 * 349.36313 * 7 2 1 10 10 C 1.40708 * 120.32488 * 331.96849 * 9 7 2 11 11 C 1.37599 * 119.88157 * 179.97438 * 10 9 7 12 12 C 1.38834 * 120.56883 * 0.02562 * 11 10 9 13 13 C 1.38220 * 120.67553 * 359.71765 * 12 11 10 14 14 C 1.39227 * 120.09145 * 0.56294 * 13 12 11 15 15 C 1.47435 * 120.28542 * 179.72305 * 14 13 12 16 16 O 1.21598 * 120.00530 * 133.97374 * 15 14 13 17 17 N 1.34786 * 119.99454 * 313.97876 * 15 14 13 18 18 C 1.47223 * 121.29641 * 174.77175 * 17 15 14 19 19 C 1.52874 * 107.98254 * 115.87590 * 18 17 15 20 20 C 1.50327 * 110.76490 * 47.00176 * 19 18 17 21 21 C 1.39374 * 118.48898 * 160.81411 * 20 19 18 22 22 C 1.37862 * 119.55504 * 179.83540 * 21 20 19 23 23 N 1.31971 * 120.74083 * 359.50624 * 22 21 20 24 24 C 1.32236 * 121.47061 * 0.43824 * 23 22 21 25 25 N 1.38998 * 119.59769 * 180.02562 * 24 23 22 26 26 C 1.37509 * 123.14076 * 340.53591 * 20 19 18 27 27 C 1.46758 * 121.30135 * 354.79434 * 17 15 14 28 28 H 0.96994 * 120.00183 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.06028 * 0.02562 * 10 9 7 30 30 H 1.07996 * 119.71929 * 179.97438 * 11 10 9 31 31 H 1.07994 * 119.65991 * 180.02562 * 12 11 10 32 32 H 1.07998 * 119.95882 * 180.27968 * 13 12 11 33 33 H 1.08994 * 109.76068 * 356.24993 * 18 17 15 34 34 H 1.09007 * 109.75823 * 235.48816 * 18 17 15 35 35 H 1.09001 * 109.21641 * 286.67255 * 19 18 17 36 36 H 1.08998 * 109.18538 * 167.31719 * 19 18 17 37 37 H 1.08005 * 120.22547 * 359.61348 * 21 20 19 38 38 H 1.08002 * 119.62580 * 179.74728 * 22 21 20 39 39 H 0.97006 * 119.99755 * 179.97438 * 25 24 23 40 40 H 0.96998 * 120.00001 * 359.97438 * 25 24 23 41 41 H 1.08999 * 109.46108 * 344.39207 * 27 17 15 42 42 H 1.08992 * 109.46301 * 104.35379 * 27 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6178 0.0000 4 1 3.0939 1.6965 -1.2125 5 1 1.2751 2.7465 0.0006 6 1 3.0940 1.6965 1.2125 7 6 2.0077 -1.2148 -0.0005 8 1 3.0738 -1.2227 -0.1731 9 6 1.3215 -2.4245 0.2241 10 6 0.1462 -2.4416 0.9976 11 6 -0.5170 -3.6283 1.2108 12 6 -0.0365 -4.8128 0.6692 13 6 1.1128 -4.8221 -0.0986 14 6 1.8091 -3.6383 -0.3271 15 6 3.0389 -3.6442 -1.1403 16 8 3.2013 -2.8031 -2.0033 17 7 3.9832 -4.5821 -0.9272 18 6 5.1680 -4.6855 -1.7949 19 6 6.4026 -4.3813 -0.9462 20 6 6.3578 -5.1400 0.3508 21 6 7.5448 -5.3150 1.0599 22 6 7.5284 -6.0043 2.2537 23 7 6.4007 -6.4910 2.7362 24 6 5.2545 -6.3444 2.0933 25 7 4.0896 -6.8725 2.6375 26 6 5.2001 -5.6654 0.8748 27 6 3.8701 -5.5404 0.1786 28 1 -0.4850 0.8400 -0.0004 29 1 -0.2352 -1.5249 1.4225 30 1 -1.4186 -3.6384 1.8052 31 1 -0.5689 -5.7357 0.8455 32 1 1.4737 -5.7495 -0.5180 33 1 5.0931 -3.9640 -2.6084 34 1 5.2400 -5.6943 -2.2017 35 1 6.4387 -3.3125 -0.7357 36 1 7.2970 -4.6683 -1.4992 37 1 8.4719 -4.9164 0.6750 38 1 8.4483 -6.1441 2.8022 39 1 3.2455 -6.7680 2.1710 40 1 4.1207 -7.3455 3.4838 41 1 3.1205 -5.1897 0.8878 42 1 3.5724 -6.5131 -0.2128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412438504.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:03:48 Heat of formation + Delta-G solvation = 6.385448 kcal Electronic energy + Delta-G solvation = -27307.360511 eV Core-core repulsion = 23636.718731 eV Total energy + Delta-G solvation = -3670.641780 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.85209 -40.60587 -38.78007 -37.37711 -36.10280 -35.61332 -33.75582 -32.28923 -31.72968 -31.15399 -29.96961 -27.55499 -26.86618 -25.37405 -23.85067 -23.13291 -22.73491 -21.93816 -20.07866 -19.16119 -18.66324 -17.96058 -17.64075 -17.23798 -16.99906 -16.52677 -16.09589 -15.94910 -15.86175 -15.61552 -15.22004 -15.01666 -14.60347 -14.45372 -14.40657 -14.11831 -13.77272 -13.52068 -13.31876 -13.18236 -13.05626 -12.86640 -12.69295 -12.43612 -12.27738 -12.23685 -11.82540 -11.59473 -11.50311 -11.15504 -10.58419 -10.43103 -10.22364 -9.64577 -9.34813 -9.31879 -8.69565 -8.68542 -6.41750 0.31905 0.52567 0.62986 1.01371 1.29486 1.40511 1.47902 1.97903 2.15361 2.23405 2.66003 2.70862 2.94824 3.53587 3.65930 3.71470 3.88699 3.96178 4.12738 4.22167 4.31598 4.37221 4.47571 4.48731 4.59969 4.65351 4.68131 4.78772 4.81146 4.91193 5.05491 5.06732 5.10038 5.24466 5.34574 5.49002 5.56581 5.64899 5.75106 5.86155 6.01046 6.11606 6.27669 6.35304 6.48892 6.62205 6.65034 6.85794 6.93911 7.35091 7.45201 8.24744 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.012615 B = 0.004702 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.066834 B = 5952.895678 C = 6780.579289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.037 3.963 3 Si 0.974 3.026 4 H -0.272 1.272 5 H -0.255 1.255 6 H -0.258 1.258 7 C -0.465 4.465 8 H 0.056 0.944 9 C 0.114 3.886 10 C -0.183 4.183 11 C -0.092 4.092 12 C -0.232 4.232 13 C -0.057 4.057 14 C -0.273 4.273 15 C 0.580 3.420 16 O -0.582 6.582 17 N -0.615 5.615 18 C 0.108 3.892 19 C -0.093 4.093 20 C 0.001 3.999 21 C -0.236 4.236 22 C 0.137 3.863 23 N -0.568 5.568 24 C 0.405 3.595 25 N -0.840 5.840 26 C -0.228 4.228 27 C 0.166 3.834 28 H 0.291 0.709 29 H 0.107 0.893 30 H 0.118 0.882 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.123 0.877 37 H 0.156 0.844 38 H 0.184 0.816 39 H 0.414 0.586 40 H 0.410 0.590 41 H 0.089 0.911 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.337 -12.307 3.421 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.179 4.179 3 Si 0.795 3.205 4 H -0.198 1.198 5 H -0.179 1.179 6 H -0.182 1.182 7 C -0.494 4.494 8 H 0.074 0.926 9 C 0.111 3.889 10 C -0.202 4.202 11 C -0.111 4.111 12 C -0.251 4.251 13 C -0.075 4.075 14 C -0.277 4.277 15 C 0.373 3.627 16 O -0.463 6.463 17 N -0.348 5.348 18 C -0.014 4.014 19 C -0.130 4.130 20 C -0.007 4.007 21 C -0.258 4.258 22 C -0.018 4.018 23 N -0.287 5.287 24 C 0.165 3.835 25 N -0.385 5.385 26 C -0.236 4.236 27 C 0.043 3.957 28 H 0.102 0.898 29 H 0.125 0.875 30 H 0.136 0.864 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.141 0.859 37 H 0.174 0.826 38 H 0.201 0.799 39 H 0.246 0.754 40 H 0.241 0.759 41 H 0.107 0.893 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 10.220 -12.129 3.718 16.291 hybrid contribution -0.226 1.425 -0.744 1.623 sum 9.994 -10.704 2.975 14.943 Atomic orbital electron populations 1.69712 1.08502 1.30706 1.35244 1.26677 0.95664 1.04154 0.91416 0.85383 0.79105 0.76357 0.79689 1.19751 1.17906 1.18170 1.19608 0.95476 0.92008 1.42276 0.92605 1.17740 0.91615 0.91590 0.87990 1.21391 0.98643 0.97712 1.02482 1.21172 0.98478 0.92854 0.98585 1.20757 0.99753 0.97823 1.06728 1.20963 0.95089 0.95210 0.96264 1.19699 1.01036 0.96035 1.10962 1.18536 0.83349 0.78789 0.82054 1.90647 1.80276 1.38814 1.36519 1.48005 1.22336 1.33369 1.31099 1.21686 0.83458 1.03105 0.93191 1.20824 0.99782 0.99408 0.93009 1.19733 0.92394 0.92814 0.95763 1.22052 0.98872 1.06516 0.98370 1.22818 0.95376 0.90788 0.92810 1.67235 0.98518 1.27191 1.35788 1.18339 0.87769 0.89419 0.87983 1.42280 1.06253 1.62334 1.27632 1.20077 0.96825 1.08450 0.98210 1.20355 0.94255 0.92815 0.88284 0.89824 0.87477 0.86358 0.84779 0.85573 0.90260 0.88690 0.91422 0.85879 0.82635 0.79936 0.75377 0.75899 0.89323 0.89009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -43.53 10.78 21.88 0.24 -43.30 16 2 C 0.04 1.94 5.26 85.37 0.45 2.39 16 3 Si 0.97 41.34 29.57 68.60 2.03 43.37 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 7 C -0.46 -26.73 7.87 23.41 0.18 -26.54 16 8 H 0.06 3.35 6.89 -2.91 -0.02 3.33 16 9 C 0.11 6.24 5.58 -21.11 -0.12 6.12 16 10 C -0.18 -9.34 8.66 22.72 0.20 -9.14 16 11 C -0.09 -3.91 10.01 22.26 0.22 -3.69 16 12 C -0.23 -8.65 10.03 22.41 0.22 -8.42 16 13 C -0.06 -2.22 7.66 22.50 0.17 -2.05 16 14 C -0.27 -13.17 4.93 -19.70 -0.10 -13.26 16 15 C 0.58 27.30 6.64 86.66 0.58 27.87 16 16 O -0.58 -32.10 15.06 -4.02 -0.06 -32.16 16 17 N -0.61 -22.02 2.94 -827.87 -2.43 -24.45 16 18 C 0.11 3.12 6.43 86.20 0.55 3.68 16 19 C -0.09 -2.30 5.90 29.69 0.18 -2.12 16 20 C 0.00 0.02 5.77 -19.88 -0.11 -0.09 16 21 C -0.24 -5.07 9.72 22.45 0.22 -4.85 16 22 C 0.14 2.98 11.17 84.58 0.94 3.92 16 23 N -0.57 -14.90 10.39 -193.13 -2.01 -16.91 16 24 C 0.40 10.76 7.72 133.23 1.03 11.79 16 25 N -0.84 -17.60 8.98 -55.23 -0.50 -18.10 16 26 C -0.23 -6.41 5.83 -19.73 -0.12 -6.53 16 27 C 0.17 4.88 3.77 85.57 0.32 5.21 16 28 H 0.29 13.99 8.29 -92.71 -0.77 13.22 16 29 H 0.11 5.76 6.15 -2.91 -0.02 5.74 16 30 H 0.12 4.28 8.06 -2.91 -0.02 4.25 16 31 H 0.13 3.91 8.06 -2.91 -0.02 3.89 16 32 H 0.13 4.01 7.01 -2.91 -0.02 3.99 16 33 H 0.08 2.60 7.09 -2.39 -0.02 2.58 16 34 H 0.09 2.19 8.14 -2.38 -0.02 2.17 16 35 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.12 2.11 8.12 -2.39 -0.02 2.09 16 37 H 0.16 2.41 8.06 -2.91 -0.02 2.38 16 38 H 0.18 2.63 8.06 -2.91 -0.02 2.61 16 39 H 0.41 7.86 7.07 -92.70 -0.65 7.20 16 40 H 0.41 7.20 8.95 -92.71 -0.83 6.37 16 41 H 0.09 2.88 4.91 -2.39 -0.01 2.86 16 42 H 0.09 2.20 7.97 -2.39 -0.02 2.18 16 Total: -1.00 -72.33 342.97 1.70 -70.62 By element: Atomic # 1 Polarization: 37.04 SS G_CDS: -0.39 Total: 36.65 kcal Atomic # 6 Polarization: -20.55 SS G_CDS: 4.83 Total: -15.73 kcal Atomic # 7 Polarization: -98.06 SS G_CDS: -4.70 Total: -102.76 kcal Atomic # 8 Polarization: -32.10 SS G_CDS: -0.06 Total: -32.16 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -72.33 1.70 -70.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412438504.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.010 kcal (2) G-P(sol) polarization free energy of solvation -72.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds