Wall clock time and date at job start Tue Mar 31 2020 13:39:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.52997 * 109.47338 * 297.21736 * 3 2 1 5 5 N 1.46496 * 109.47514 * 180.02562 * 4 3 2 6 6 C 1.46510 * 119.99807 * 265.18958 * 5 4 3 7 7 C 1.50691 * 109.46990 * 275.39964 * 6 5 4 8 8 H 1.08000 * 120.00617 * 0.02562 * 7 6 5 9 9 C 1.37881 * 119.99982 * 180.02562 * 7 6 5 10 10 N 1.31524 * 119.99709 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00338 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47195 * 59.99662 * 11 9 7 13 13 H 1.48496 * 109.47247 * 179.97438 * 11 9 7 14 14 H 1.48497 * 109.47017 * 299.99931 * 11 9 7 15 15 C 1.34776 * 120.00403 * 85.18569 * 5 4 3 16 16 O 1.21734 * 119.99696 * 5.31550 * 15 5 4 17 17 C 1.46390 * 120.00240 * 185.30997 * 15 5 4 18 18 N 1.37634 * 126.33184 * 259.03110 * 17 15 5 19 19 H 0.97001 * 125.54304 * 359.71361 * 18 17 15 20 20 C 1.35636 * 108.90205 * 179.97438 * 18 17 15 21 21 C 1.35122 * 109.21965 * 0.02562 * 20 18 17 22 22 C 1.39102 * 126.32435 * 79.00425 * 17 15 5 23 23 C 1.48171 * 126.63402 * 0.05895 * 22 17 15 24 24 C 1.39446 * 120.13239 * 303.35434 * 23 22 17 25 25 C 1.37989 * 119.87061 * 179.69738 * 24 23 22 26 26 C 1.38347 * 120.12733 * 0.58100 * 25 24 23 27 27 C 1.38340 * 120.26762 * 359.71801 * 26 25 24 28 28 C 1.37991 * 120.13036 * 359.97438 * 27 26 25 29 29 H 1.09000 * 109.47270 * 177.22151 * 3 2 1 30 30 H 1.09001 * 109.47303 * 57.21935 * 3 2 1 31 31 H 1.09005 * 109.47041 * 59.99846 * 4 3 2 32 32 H 1.09001 * 109.47086 * 300.00332 * 4 3 2 33 33 H 1.09000 * 109.46502 * 35.40337 * 6 5 4 34 34 H 1.08995 * 109.47019 * 155.39920 * 6 5 4 35 35 H 0.96998 * 119.99862 * 180.02562 * 10 9 7 36 36 H 1.07998 * 125.39188 * 180.02562 * 20 18 17 37 37 H 1.08004 * 126.09530 * 180.02562 * 21 20 18 38 38 H 1.08004 * 120.06573 * 359.97438 * 24 23 22 39 39 H 1.08001 * 119.93937 * 180.29555 * 25 24 23 40 40 H 1.07998 * 119.86733 * 179.69236 * 26 25 24 41 41 H 1.07996 * 119.93908 * 180.02562 * 27 26 25 42 42 H 1.08002 * 120.06775 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1183 -0.6588 1.2827 5 7 4.5833 -0.6577 1.2831 6 6 5.3168 -1.8300 0.7994 7 6 5.4527 -2.8332 1.9156 8 1 5.0342 -2.6192 2.8880 9 6 6.1114 -4.0243 1.6956 10 7 6.6207 -4.2852 0.5114 11 14 6.2793 -5.2682 3.0790 12 1 4.9294 -5.6841 3.5373 13 1 7.0229 -6.4564 2.5888 14 1 7.0185 -4.6532 4.2106 15 6 5.2563 0.4219 1.7282 16 8 4.6507 1.3567 2.2194 17 6 6.7154 0.4703 1.6211 18 7 7.6158 0.2286 2.6336 19 1 7.3879 -0.0009 3.5481 20 6 8.8737 0.3692 2.1459 21 6 8.8090 0.6980 0.8369 22 6 7.4482 0.7685 0.4769 23 6 6.9034 1.0979 -0.8610 24 6 6.0429 0.2092 -1.5047 25 6 5.5338 0.5242 -2.7479 26 6 5.8850 1.7136 -3.3611 27 6 6.7431 2.5965 -2.7302 28 6 7.2536 2.2953 -1.4841 29 1 2.9709 1.0273 -0.0498 30 1 2.9716 -0.5556 -0.8640 31 1 2.7554 -1.6855 1.3326 32 1 2.7547 -0.1026 2.1467 33 1 4.7735 -2.2814 -0.0308 34 1 6.3075 -1.5251 0.4623 35 1 7.0837 -5.1233 0.3565 36 1 9.7829 0.2391 2.7139 37 1 9.6502 0.8743 0.1828 38 1 5.7720 -0.7219 -1.0291 39 1 4.8635 -0.1611 -3.2453 40 1 5.4879 1.9537 -4.3363 41 1 7.0133 3.5237 -3.2135 42 1 7.9231 2.9855 -0.9924 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412459781.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:39:05 Heat of formation + Delta-G solvation = 47.940015 kcal Electronic energy + Delta-G solvation = -27328.252659 eV Core-core repulsion = 23659.412820 eV Total energy + Delta-G solvation = -3668.839839 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.19568 -40.24564 -39.51476 -37.92946 -36.81765 -34.70345 -33.45864 -32.72925 -31.63242 -30.65991 -29.52429 -28.90096 -25.77085 -25.01952 -23.75394 -23.21308 -21.97736 -21.25047 -20.06147 -19.09103 -18.61068 -18.34385 -17.49861 -17.25755 -16.77094 -16.24586 -16.04656 -15.77030 -15.53487 -15.47364 -14.84045 -14.70767 -14.43559 -14.38811 -14.15534 -13.90106 -13.72693 -13.68608 -13.62521 -13.50657 -13.25997 -13.04710 -12.86057 -12.76390 -12.58373 -12.17490 -11.94650 -11.86854 -11.83529 -11.48012 -11.08619 -10.55452 -10.03389 -9.68209 -9.58665 -9.26719 -8.75517 -8.15716 -6.28342 0.43002 0.68475 1.18280 1.37241 1.42287 1.46136 1.51135 1.64808 1.74619 2.04274 2.23784 2.41449 2.70794 3.08508 3.12479 3.16544 3.77445 4.05626 4.07390 4.13359 4.25030 4.29887 4.44690 4.47347 4.49752 4.61833 4.77136 4.81111 4.88501 4.89794 4.97391 5.00122 5.28632 5.30154 5.35257 5.38400 5.66501 5.69403 5.77481 5.78761 5.88327 6.00928 6.12933 6.14141 6.29670 6.45190 6.50826 6.70414 6.81393 7.16803 7.42454 8.89562 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008477 B = 0.006112 C = 0.004594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3302.436979 B = 4580.380721 C = 6093.810719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C 0.246 3.754 3 C -0.031 4.031 4 C 0.121 3.879 5 N -0.575 5.575 6 C 0.251 3.749 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.029 3.971 10 N -0.911 5.911 11 Si 0.947 3.053 12 H -0.275 1.275 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.592 3.408 16 O -0.581 6.581 17 C -0.028 4.028 18 N -0.523 5.523 19 H 0.424 0.576 20 C 0.017 3.983 21 C -0.205 4.205 22 C -0.102 4.102 23 C -0.030 4.030 24 C -0.134 4.134 25 C -0.125 4.125 26 C -0.125 4.125 27 C -0.123 4.123 28 C -0.116 4.116 29 H 0.114 0.886 30 H 0.130 0.870 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.030 0.970 34 H 0.046 0.954 35 H 0.266 0.734 36 H 0.205 0.795 37 H 0.155 0.845 38 H 0.119 0.881 39 H 0.136 0.864 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.973 9.434 -4.006 11.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.160 5.160 2 C -0.072 4.072 3 C -0.072 4.072 4 C -0.004 4.004 5 N -0.304 5.304 6 C 0.131 3.869 7 C -0.585 4.585 8 H 0.070 0.930 9 C -0.172 4.172 10 N -0.550 5.550 11 Si 0.773 3.227 12 H -0.201 1.201 13 H -0.212 1.212 14 H -0.198 1.198 15 C 0.379 3.621 16 O -0.462 6.462 17 C -0.144 4.144 18 N -0.117 5.117 19 H 0.262 0.738 20 C -0.117 4.117 21 C -0.229 4.229 22 C -0.110 4.110 23 C -0.030 4.030 24 C -0.152 4.152 25 C -0.143 4.143 26 C -0.143 4.143 27 C -0.141 4.141 28 C -0.135 4.135 29 H 0.132 0.868 30 H 0.147 0.853 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.222 0.778 37 H 0.173 0.827 38 H 0.137 0.863 39 H 0.154 0.846 40 H 0.163 0.837 41 H 0.164 0.836 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.997 9.697 -3.699 10.802 hybrid contribution 0.515 -1.285 1.242 1.860 sum 3.512 8.412 -2.457 9.441 Atomic orbital electron populations 1.81203 1.13994 1.10725 1.10122 1.29052 0.94876 0.91475 0.91754 1.19665 0.80547 1.05390 1.01639 1.21278 0.79731 1.02544 0.96805 1.48058 1.06171 1.15263 1.60924 1.19279 0.92484 0.81033 0.94137 1.21598 1.36602 1.02399 0.97907 0.92966 1.25489 0.94936 0.99408 0.97360 1.69991 1.37042 1.25282 1.22693 0.85784 0.78191 0.78771 0.79925 1.20054 1.21150 1.19835 1.17279 0.85896 0.81847 0.77078 1.90750 1.70467 1.38061 1.46878 1.19996 0.89551 1.14178 0.90629 1.41776 1.05803 1.52842 1.11251 0.73792 1.22331 0.87657 1.05956 0.95780 1.20993 0.95230 1.10828 0.95858 1.18640 0.93485 1.07946 0.90975 1.18388 0.97392 0.95039 0.92197 1.21785 0.97510 0.99619 0.96263 1.21313 1.00325 0.97920 0.94721 1.21486 0.98103 0.93964 1.00744 1.21354 0.97592 1.00468 0.94673 1.21365 1.00522 0.95670 0.95906 0.86826 0.85259 0.88584 0.90313 0.95219 0.93667 0.92513 0.77800 0.82687 0.86327 0.84613 0.83655 0.83554 0.85381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -15.77 18.54 20.00 0.37 -15.40 16 2 C 0.25 6.90 15.43 89.44 1.38 8.28 16 3 C -0.03 -0.81 5.99 28.79 0.17 -0.63 16 4 C 0.12 3.81 5.38 86.38 0.46 4.27 16 5 N -0.58 -21.35 2.40 -831.19 -1.99 -23.35 16 6 C 0.25 10.73 3.14 85.63 0.27 11.00 16 7 C -0.55 -26.19 9.38 25.60 0.24 -25.95 16 8 H 0.05 2.53 7.81 -2.91 -0.02 2.51 16 9 C 0.03 1.45 5.46 84.65 0.46 1.91 16 10 N -0.91 -47.56 13.29 21.45 0.28 -47.28 16 11 Si 0.95 39.80 29.54 68.60 2.03 41.83 16 12 H -0.28 -11.46 7.11 99.48 0.71 -10.75 16 13 H -0.29 -11.98 7.11 99.48 0.71 -11.27 16 14 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 15 C 0.59 23.12 7.06 86.36 0.61 23.73 16 16 O -0.58 -24.74 16.74 -4.46 -0.07 -24.81 16 17 C -0.03 -1.02 5.26 40.56 0.21 -0.81 16 18 N -0.52 -16.47 6.09 -183.14 -1.11 -17.58 16 19 H 0.42 11.82 8.96 -92.71 -0.83 10.99 16 20 C 0.02 0.44 11.86 83.39 0.99 1.43 16 21 C -0.21 -6.12 10.79 22.21 0.24 -5.88 16 22 C -0.10 -3.56 4.92 -19.77 -0.10 -3.66 16 23 C -0.03 -0.96 5.55 -20.05 -0.11 -1.07 16 24 C -0.13 -4.31 9.46 22.50 0.21 -4.10 16 25 C -0.12 -3.24 10.03 22.24 0.22 -3.02 16 26 C -0.13 -2.75 10.04 22.32 0.22 -2.52 16 27 C -0.12 -2.74 10.03 22.24 0.22 -2.52 16 28 C -0.12 -3.16 9.78 22.50 0.22 -2.94 16 29 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 30 H 0.13 2.94 8.14 -2.39 -0.02 2.92 16 31 H 0.10 2.99 8.04 -2.38 -0.02 2.97 16 32 H 0.08 2.54 7.50 -2.39 -0.02 2.52 16 33 H 0.03 1.32 7.93 -2.39 -0.02 1.30 16 34 H 0.05 2.11 4.85 -2.39 -0.01 2.10 16 35 H 0.27 13.37 8.31 -92.71 -0.77 12.60 16 36 H 0.21 3.59 8.06 -2.91 -0.02 3.57 16 37 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 38 H 0.12 4.32 4.02 -2.91 -0.01 4.31 16 39 H 0.14 2.96 8.06 -2.91 -0.02 2.94 16 40 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 42 H 0.13 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -64.08 369.53 5.67 -58.41 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: 0.24 Total: 30.65 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 5.93 Total: -2.48 kcal Atomic # 7 Polarization: -101.15 SS G_CDS: -2.45 Total: -103.61 kcal Atomic # 8 Polarization: -24.74 SS G_CDS: -0.07 Total: -24.81 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -64.08 5.67 -58.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412459781.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.354 kcal (2) G-P(sol) polarization free energy of solvation -64.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.940 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds