Wall clock time and date at job start Tue Mar 31 2020 14:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86804 * 120.00135 * 2 1 4 4 H 1.48499 * 109.47075 * 264.81891 * 3 2 1 5 5 H 1.48504 * 109.46950 * 24.81292 * 3 2 1 6 6 H 1.48500 * 109.47255 * 144.81536 * 3 2 1 7 7 C 1.37873 * 119.99854 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00012 * 353.52045 * 7 2 1 9 9 C 1.50702 * 119.99799 * 173.51673 * 7 2 1 10 10 H 1.09003 * 109.46972 * 33.99040 * 9 7 2 11 11 C 1.50698 * 109.47122 * 153.99233 * 9 7 2 12 12 O 1.21267 * 120.00426 * 119.99574 * 11 9 7 13 13 N 1.34783 * 120.00092 * 300.00282 * 11 9 7 14 14 C 1.38930 * 120.00338 * 179.97438 * 13 11 9 15 15 N 1.32420 * 119.20376 * 0.02562 * 14 13 11 16 16 C 1.32261 * 120.75314 * 179.97438 * 15 14 13 17 17 C 1.38636 * 119.18237 * 0.27046 * 16 15 14 18 18 C 1.38600 * 118.53230 * 359.46010 * 17 16 15 19 19 C 1.50694 * 120.40371 * 180.25920 * 18 17 16 20 20 C 1.53001 * 117.50314 * 344.03438 * 19 18 17 21 21 C 1.53003 * 117.50609 * 275.37173 * 19 18 17 22 22 N 1.32289 * 119.18380 * 0.54690 * 18 17 16 23 23 C 1.50699 * 109.47368 * 273.99306 * 9 7 2 24 24 C 1.38238 * 119.99657 * 305.81300 * 23 9 7 25 25 C 1.38239 * 120.00070 * 179.78732 * 24 23 9 26 26 C 1.38240 * 119.99324 * 0.44415 * 25 24 23 27 27 C 1.38233 * 120.00608 * 359.80876 * 26 25 24 28 28 C 1.38228 * 120.00167 * 126.08596 * 23 9 7 29 29 H 0.97004 * 119.99845 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99704 * 359.97438 * 13 11 9 31 31 H 1.08000 * 120.40947 * 180.02562 * 16 15 14 32 32 H 1.07999 * 120.73292 * 179.70555 * 17 16 15 33 33 H 1.09004 * 115.54838 * 129.70136 * 19 18 17 34 34 H 1.08996 * 117.49935 * 359.97438 * 20 19 18 35 35 H 1.09004 * 117.49995 * 145.01864 * 20 19 18 36 36 H 1.08996 * 117.50102 * 214.98307 * 21 19 18 37 37 H 1.09008 * 117.49211 * 359.97438 * 21 19 18 38 38 H 1.07995 * 120.00057 * 0.02562 * 24 23 9 39 39 H 1.07991 * 120.00306 * 180.27599 * 25 24 23 40 40 H 1.08002 * 119.99466 * 179.83823 * 26 25 24 41 41 H 1.07991 * 120.00114 * 179.97438 * 27 26 25 42 42 H 1.07998 * 120.00330 * 359.97438 * 28 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6062 1.9832 -1.3943 5 1 1.3961 2.6819 0.5876 6 1 3.4877 1.4743 0.8067 7 6 2.0045 -1.1940 0.0005 8 1 1.4696 -2.1263 0.1065 9 6 3.5042 -1.1983 -0.1468 10 1 3.9196 -0.3159 0.3400 11 6 4.0686 -2.4391 0.4957 12 8 4.7016 -3.2318 -0.1688 13 7 3.8698 -2.6679 1.8090 14 6 4.3897 -3.8121 2.4013 15 7 5.0785 -4.6670 1.6609 16 6 5.5874 -5.7655 2.1932 17 6 5.3873 -6.0188 3.5415 18 6 4.6664 -5.0998 4.2878 19 6 4.4287 -5.3301 5.7579 20 6 4.6676 -6.7408 6.2999 21 6 3.2399 -6.2088 6.1524 22 7 4.1849 -4.0211 3.6924 23 6 3.8654 -1.1815 -1.6098 24 6 3.3469 -2.1398 -2.4606 25 6 3.6746 -2.1219 -3.8035 26 6 4.5281 -1.1512 -4.2937 27 6 5.0507 -0.1961 -3.4419 28 6 4.7194 -0.2114 -2.0999 29 1 -0.4850 0.8401 -0.0004 30 1 3.3637 -2.0337 2.3406 31 1 6.1487 -6.4588 1.5842 32 1 5.7876 -6.9104 4.0009 33 1 4.6735 -4.4920 6.4106 34 1 4.9963 -7.5025 5.5930 35 1 5.0692 -6.8309 7.3093 36 1 2.7028 -5.9491 7.0646 37 1 2.6294 -6.6200 5.3483 38 1 2.6828 -2.9001 -2.0770 39 1 3.2661 -2.8678 -4.4690 40 1 4.7862 -1.1388 -5.3424 41 1 5.7177 0.5620 -3.8249 42 1 5.1276 0.5349 -1.4345 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433525728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:36 Heat of formation + Delta-G solvation = 66.363821 kcal Electronic energy + Delta-G solvation = -26236.655089 eV Core-core repulsion = 22568.614166 eV Total energy + Delta-G solvation = -3668.040923 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.39334 -40.96570 -39.53377 -38.20367 -35.89842 -35.55177 -34.45075 -33.40865 -31.71094 -31.64317 -29.51027 -26.53957 -25.96234 -24.85166 -23.45611 -23.23182 -23.11834 -21.91408 -20.90150 -19.30863 -19.16056 -18.48715 -17.59311 -17.38400 -17.10697 -16.73583 -16.31292 -16.09972 -15.86630 -15.67399 -15.30611 -14.96626 -14.88013 -14.79669 -14.41353 -14.14031 -13.80046 -13.52682 -13.11295 -13.04078 -12.76029 -12.45687 -12.35879 -12.07696 -12.06315 -11.97212 -11.92702 -11.65830 -11.46537 -11.41135 -11.01338 -10.89519 -10.70596 -10.00797 -9.66484 -9.64259 -9.41979 -8.38445 -6.48505 -0.10056 0.12735 0.60927 0.67561 1.33168 1.38089 1.42877 1.58713 1.74118 2.28466 2.69645 2.90126 2.91462 3.08293 3.12362 3.40076 3.64775 3.90363 4.04751 4.09310 4.11895 4.14842 4.16928 4.29505 4.30006 4.37488 4.39726 4.52879 4.66388 4.78807 4.80347 4.87897 5.02715 5.10896 5.12996 5.14561 5.27016 5.29538 5.35211 5.51116 5.67462 5.72099 5.91321 6.03265 6.13101 6.15863 6.29126 6.53898 7.10095 7.17247 7.30078 8.76155 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014544 B = 0.003718 C = 0.003178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1924.757600 B = 7529.287717 C = 8808.788519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.042 3.958 3 Si 0.920 3.080 4 H -0.260 1.260 5 H -0.282 1.282 6 H -0.236 1.236 7 C -0.510 4.510 8 H 0.037 0.963 9 C 0.033 3.967 10 H 0.082 0.918 11 C 0.531 3.469 12 O -0.505 6.505 13 N -0.635 5.635 14 C 0.524 3.476 15 N -0.546 5.546 16 C 0.163 3.837 17 C -0.251 4.251 18 C 0.220 3.780 19 C -0.133 4.133 20 C -0.138 4.138 21 C -0.164 4.164 22 N -0.566 5.566 23 C -0.059 4.059 24 C -0.100 4.100 25 C -0.133 4.133 26 C -0.133 4.133 27 C -0.125 4.125 28 C -0.149 4.149 29 H 0.272 0.728 30 H 0.429 0.571 31 H 0.200 0.800 32 H 0.189 0.811 33 H 0.128 0.872 34 H 0.114 0.886 35 H 0.128 0.872 36 H 0.116 0.884 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.134 0.866 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.631 -9.135 8.017 17.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.159 4.159 3 Si 0.743 3.257 4 H -0.184 1.184 5 H -0.208 1.208 6 H -0.159 1.159 7 C -0.548 4.548 8 H 0.055 0.945 9 C 0.012 3.988 10 H 0.099 0.901 11 C 0.319 3.681 12 O -0.376 6.376 13 N -0.284 5.284 14 C 0.168 3.832 15 N -0.268 5.268 16 C -0.002 4.002 17 C -0.274 4.274 18 C 0.073 3.927 19 C -0.152 4.152 20 C -0.175 4.175 21 C -0.202 4.202 22 N -0.288 5.288 23 C -0.060 4.060 24 C -0.119 4.119 25 C -0.151 4.151 26 C -0.151 4.151 27 C -0.142 4.142 28 C -0.167 4.167 29 H 0.081 0.919 30 H 0.268 0.732 31 H 0.217 0.783 32 H 0.206 0.794 33 H 0.146 0.854 34 H 0.132 0.868 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.101 0.899 38 H 0.105 0.895 39 H 0.152 0.848 40 H 0.169 0.831 41 H 0.168 0.832 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 12.507 -8.667 6.994 16.747 hybrid contribution -0.586 0.479 0.601 0.967 sum 11.921 -8.188 7.596 16.335 Atomic orbital electron populations 1.69998 1.08088 1.28608 1.49775 1.25665 0.95266 1.02264 0.92722 0.86100 0.80005 0.79248 0.80362 1.18432 1.20773 1.15943 1.20411 0.88223 0.93804 1.52332 0.94496 1.18411 0.96620 0.92942 0.90841 0.90053 1.21388 0.77851 0.88586 0.80268 1.90678 1.38008 1.47291 1.61632 1.43369 1.53130 1.20900 1.10970 1.19711 0.89793 0.87983 0.85694 1.68500 1.13320 1.05589 1.39351 1.23857 0.91360 0.91358 0.93674 1.22911 1.04715 1.04083 0.95683 1.21144 0.88458 0.87119 0.95994 1.20875 1.07816 0.97892 0.88646 1.23284 0.97385 0.92966 1.03851 1.23064 0.91753 1.01923 1.03473 1.67541 1.26292 1.25441 1.09484 1.19999 0.94959 0.95257 0.95790 1.20810 0.98736 0.98006 0.94306 1.21349 0.99174 0.99995 0.94603 1.21367 0.97852 0.95035 1.00819 1.21369 1.00511 0.99648 0.92715 1.21244 0.98925 0.99291 0.97259 0.91908 0.73211 0.78299 0.79413 0.85430 0.86822 0.85416 0.86588 0.89929 0.89502 0.84799 0.83079 0.83240 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.91 13.96 21.45 0.30 -54.61 16 2 C 0.04 2.29 5.47 84.65 0.46 2.76 16 3 Si 0.92 40.92 26.74 68.60 1.83 42.75 16 4 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 5 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 6 H -0.24 -9.39 6.31 99.48 0.63 -8.76 16 7 C -0.51 -27.74 8.03 25.60 0.21 -27.53 16 8 H 0.04 2.29 8.05 -2.91 -0.02 2.26 16 9 C 0.03 1.58 1.89 -13.03 -0.02 1.55 16 10 H 0.08 3.61 5.15 -2.39 -0.01 3.60 16 11 C 0.53 24.97 7.00 87.66 0.61 25.58 16 12 O -0.51 -25.40 13.61 -2.99 -0.04 -25.44 16 13 N -0.63 -27.22 5.30 -313.67 -1.66 -28.88 16 14 C 0.52 21.09 8.38 261.30 2.19 23.28 16 15 N -0.55 -21.35 7.87 -197.68 -1.56 -22.91 16 16 C 0.16 4.48 11.30 84.72 0.96 5.43 16 17 C -0.25 -5.49 9.43 22.45 0.21 -5.28 16 18 C 0.22 5.84 6.50 42.57 0.28 6.12 16 19 C -0.13 -2.50 6.24 -11.54 -0.07 -2.57 16 20 C -0.14 -1.48 9.83 30.62 0.30 -1.18 16 21 C -0.16 -2.59 10.24 30.62 0.31 -2.27 16 22 N -0.57 -19.94 10.39 -185.75 -1.93 -21.87 16 23 C -0.06 -2.69 3.95 -19.87 -0.08 -2.77 16 24 C -0.10 -4.58 8.30 22.27 0.18 -4.39 16 25 C -0.13 -4.97 10.05 22.27 0.22 -4.75 16 26 C -0.13 -4.25 10.05 22.27 0.22 -4.03 16 27 C -0.12 -4.10 10.05 22.27 0.22 -3.87 16 28 C -0.15 -5.84 9.26 22.27 0.21 -5.64 16 29 H 0.27 15.05 8.31 -92.70 -0.77 14.28 16 30 H 0.43 17.40 8.70 -92.71 -0.81 16.59 16 31 H 0.20 3.84 8.06 -2.91 -0.02 3.82 16 32 H 0.19 2.29 6.37 -2.91 -0.02 2.27 16 33 H 0.13 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.11 0.94 6.45 -2.39 -0.02 0.93 16 35 H 0.13 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.08 1.54 8.14 -2.38 -0.02 1.52 16 38 H 0.09 4.36 7.90 -2.91 -0.02 4.34 16 39 H 0.13 4.23 8.06 -2.92 -0.02 4.21 16 40 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 41 H 0.15 3.70 8.06 -2.92 -0.02 3.68 16 42 H 0.12 4.33 7.96 -2.91 -0.02 4.31 16 Total: -1.00 -75.27 358.03 3.54 -71.73 By element: Atomic # 1 Polarization: 38.62 SS G_CDS: 0.18 Total: 38.80 kcal Atomic # 6 Polarization: -5.98 SS G_CDS: 6.42 Total: 0.44 kcal Atomic # 7 Polarization: -123.42 SS G_CDS: -4.85 Total: -128.27 kcal Atomic # 8 Polarization: -25.40 SS G_CDS: -0.04 Total: -25.44 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 1.83 Total: 42.75 kcal Total: -75.27 3.54 -71.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433525728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.093 kcal (2) G-P(sol) polarization free energy of solvation -75.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds