Wall clock time and date at job start Tue Mar 31 2020 14:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 120.00006 * 2 1 4 4 H 1.48491 * 109.47200 * 273.69711 * 3 2 1 5 5 H 1.48502 * 109.46824 * 33.69707 * 3 2 1 6 6 H 1.48500 * 109.47021 * 153.69200 * 3 2 1 7 7 C 1.37879 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00227 * 0.62939 * 7 2 1 9 9 C 1.50698 * 119.99742 * 180.63483 * 7 2 1 10 10 H 1.08999 * 109.47410 * 329.25072 * 9 7 2 11 11 C 1.50700 * 109.47240 * 209.24299 * 9 7 2 12 12 O 1.21278 * 119.99956 * 266.08654 * 11 9 7 13 13 N 1.34772 * 119.99605 * 86.08500 * 11 9 7 14 14 C 1.47229 * 121.31208 * 179.97438 * 13 11 9 15 15 C 1.52862 * 108.04316 * 115.79483 * 14 13 11 16 16 C 1.50414 * 110.74460 * 47.21726 * 15 14 13 17 17 N 1.32967 * 118.38659 * 160.66059 * 16 15 14 18 18 C 1.31580 * 121.10318 * 179.38997 * 17 16 15 19 19 N 1.31815 * 121.73027 * 0.02562 * 18 17 16 20 20 C 1.32210 * 120.58175 * 0.47073 * 19 18 17 21 21 C 1.37765 * 122.90120 * 340.41933 * 16 15 14 22 22 C 1.46798 * 121.31777 * 359.97438 * 13 11 9 23 23 C 1.50708 * 109.47108 * 89.24562 * 9 7 2 24 24 C 1.38231 * 119.99805 * 51.42636 * 23 9 7 25 25 C 1.38243 * 119.99764 * 179.78907 * 24 23 9 26 26 C 1.38230 * 119.99929 * 0.43892 * 25 24 23 27 27 C 1.38241 * 120.00079 * 359.81290 * 26 25 24 28 28 C 1.38231 * 119.99825 * 359.97438 * 27 26 25 29 29 H 0.96994 * 119.99796 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.75040 * 235.42907 * 14 13 11 31 31 H 1.09000 * 109.74768 * 356.11512 * 14 13 11 32 32 H 1.08997 * 109.22746 * 167.55171 * 15 14 13 33 33 H 1.09000 * 109.22359 * 286.90253 * 15 14 13 34 34 H 1.07999 * 119.13408 * 180.02562 * 18 17 16 35 35 H 1.07999 * 120.38221 * 179.70292 * 20 19 18 36 36 H 1.08994 * 109.47107 * 104.21005 * 22 13 11 37 37 H 1.09007 * 109.46388 * 344.22327 * 22 13 11 38 38 H 1.07998 * 120.00370 * 359.97438 * 24 23 9 39 39 H 1.08004 * 119.99651 * 180.27348 * 25 24 23 40 40 H 1.08000 * 120.00194 * 179.83703 * 26 25 24 41 41 H 1.08002 * 119.99831 * 179.97438 * 27 26 25 42 42 H 1.07997 * 119.99739 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4185 2.0916 -1.3971 5 1 1.4879 2.6288 0.7768 6 1 3.5836 1.4189 0.6205 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0112 9 6 3.5115 -1.1941 0.0139 10 1 3.8798 -0.3078 -0.5027 11 6 4.0205 -2.4297 -0.6827 12 8 4.2841 -3.4234 -0.0394 13 7 4.1828 -2.4303 -2.0206 14 6 4.6787 -3.6209 -2.7307 15 6 3.5684 -4.1161 -3.6574 16 6 2.9796 -2.9749 -4.4406 17 7 2.2989 -3.2532 -5.5484 18 6 1.7512 -2.2973 -6.2679 19 7 1.8518 -1.0282 -5.9262 20 6 2.5218 -0.6744 -4.8427 21 6 3.1109 -1.6580 -4.0578 22 6 3.8723 -1.2439 -2.8274 23 6 4.0002 -1.1839 1.4395 24 6 3.5181 -2.1134 2.3420 25 6 3.9696 -2.1068 3.6486 26 6 4.8964 -1.1650 4.0549 27 6 5.3746 -0.2323 3.1536 28 6 4.9264 -0.2416 1.8460 29 1 -0.4849 0.8400 0.0004 30 1 5.5591 -3.3596 -3.3178 31 1 4.9334 -4.3992 -2.0114 32 1 3.9793 -4.8517 -4.3488 33 1 2.7850 -4.5837 -3.0609 34 1 1.2048 -2.5594 -7.1618 35 1 2.6062 0.3668 -4.5683 36 1 4.7992 -0.7523 -3.1225 37 1 3.2661 -0.5538 -2.2403 38 1 2.7909 -2.8466 2.0257 39 1 3.5962 -2.8358 4.3527 40 1 5.2472 -1.1582 5.0763 41 1 6.0984 0.5038 3.4711 42 1 5.2996 0.4873 1.1420 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001438824693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:13 Heat of formation + Delta-G solvation = 44.406155 kcal Electronic energy + Delta-G solvation = -27395.835681 eV Core-core repulsion = 23726.842602 eV Total energy + Delta-G solvation = -3668.993079 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.23082 -39.58630 -38.17387 -36.24683 -34.22913 -33.66509 -31.96343 -31.68653 -30.92094 -30.15919 -27.87881 -26.25525 -24.90211 -23.56973 -23.13802 -22.01248 -21.83007 -20.49419 -18.70941 -17.45159 -17.19737 -16.95943 -16.25441 -16.03562 -15.73394 -15.24446 -14.80873 -14.55857 -14.27575 -13.96704 -13.83637 -13.65215 -13.36950 -13.15228 -12.86760 -12.79167 -12.57512 -12.29948 -12.18403 -12.07042 -11.64897 -11.40727 -11.19764 -11.01990 -10.85743 -10.55190 -10.36390 -10.31053 -9.97222 -9.63307 -9.18851 -9.15027 -8.96310 -8.83086 -8.36528 -8.13613 -7.85605 -6.34990 -4.40004 0.99448 1.12927 2.10414 2.18563 3.04056 3.20072 3.22488 3.28227 3.42057 3.81768 4.09408 4.16053 4.28473 4.49893 4.57239 4.72998 4.91379 4.96818 5.12380 5.25679 5.42129 5.47405 5.52494 5.55636 5.59491 5.66772 5.72118 5.76810 5.89606 5.97245 6.02421 6.07329 6.16950 6.28312 6.40012 6.48617 6.67981 6.79461 6.83603 7.04694 7.13982 7.20864 7.24955 7.57333 7.74273 7.85046 8.15302 8.18762 8.65764 8.85004 9.20724 10.75907 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.005008 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.372116 B = 5589.876072 C = 6689.230772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.086 3.914 3 Si 0.849 3.151 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.243 1.243 7 C -0.509 4.509 8 H 0.081 0.919 9 C 0.035 3.965 10 H 0.058 0.942 11 C 0.547 3.453 12 O -0.546 6.546 13 N -0.619 5.619 14 C 0.112 3.888 15 C -0.087 4.087 16 C 0.189 3.811 17 N -0.524 5.524 18 C 0.285 3.715 19 N -0.522 5.522 20 C 0.159 3.841 21 C -0.184 4.184 22 C 0.156 3.844 23 C -0.041 4.041 24 C -0.063 4.063 25 C -0.134 4.134 26 C -0.140 4.140 27 C -0.135 4.135 28 C -0.130 4.130 29 H 0.269 0.731 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.096 0.904 34 H 0.193 0.807 35 H 0.170 0.830 36 H 0.079 0.921 37 H 0.118 0.882 38 H 0.122 0.878 39 H 0.111 0.889 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.436 -1.121 -6.134 11.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.119 4.119 3 Si 0.675 3.325 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.166 1.166 7 C -0.547 4.547 8 H 0.099 0.901 9 C 0.014 3.986 10 H 0.075 0.925 11 C 0.338 3.662 12 O -0.423 6.423 13 N -0.353 5.353 14 C -0.011 4.011 15 C -0.126 4.126 16 C 0.045 3.955 17 N -0.238 5.238 18 C -0.003 4.003 19 N -0.235 5.235 20 C -0.009 4.009 21 C -0.188 4.188 22 C 0.031 3.969 23 C -0.042 4.042 24 C -0.082 4.082 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.153 4.153 28 C -0.148 4.148 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.121 0.879 32 H 0.114 0.886 33 H 0.114 0.886 34 H 0.209 0.791 35 H 0.187 0.813 36 H 0.097 0.903 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.129 0.871 40 H 0.126 0.874 41 H 0.127 0.873 42 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 8.874 -1.800 -6.581 11.194 hybrid contribution 0.383 1.338 0.610 1.520 sum 9.257 -0.461 -5.971 11.026 Atomic orbital electron populations 1.69851 1.06275 1.27520 1.47802 1.24947 0.94699 0.98699 0.93566 0.87250 0.82215 0.84060 0.78983 1.19788 1.20766 1.16617 1.20425 0.85670 0.95312 1.53255 0.90140 1.18405 0.98603 0.92193 0.89440 0.92458 1.21156 0.73948 0.90848 0.80241 1.90588 1.51059 1.36097 1.64565 1.48020 1.67198 1.13323 1.06753 1.21518 0.94848 0.89665 0.95059 1.20784 0.99453 0.94819 0.97543 1.21123 0.90782 0.93274 0.90326 1.68374 1.10240 1.38619 1.06591 1.24807 0.93647 0.84011 0.97833 1.68423 1.16972 1.21043 1.17103 1.23157 0.88863 1.00328 0.88530 1.21401 1.02377 0.95358 0.99699 1.20410 0.98570 0.88843 0.89058 1.20132 0.93043 0.94028 0.97031 1.20943 0.97668 0.97598 0.91941 1.21072 0.98566 0.99170 0.96395 1.20890 0.99288 0.96885 0.98744 1.20881 1.01053 0.99429 0.93949 1.21049 0.98242 0.99417 0.96126 0.92058 0.91276 0.87860 0.88560 0.88576 0.79055 0.81305 0.90299 0.86376 0.85986 0.87099 0.87363 0.87324 0.87136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.63 13.96 55.43 0.77 -23.85 16 2 C 0.09 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.85 18.42 26.80 -169.99 -4.56 13.86 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.24 -4.88 4.29 56.52 0.24 -4.64 16 7 C -0.51 -12.76 7.60 -34.44 -0.26 -13.03 16 8 H 0.08 2.31 8.06 -52.48 -0.42 1.89 16 9 C 0.04 0.75 1.02 -94.07 -0.10 0.66 16 10 H 0.06 1.14 3.96 -51.93 -0.21 0.93 16 11 C 0.55 11.17 6.79 -10.99 -0.07 11.09 16 12 O -0.55 -12.29 14.76 5.56 0.08 -12.21 16 13 N -0.62 -10.41 2.94 -174.43 -0.51 -10.92 16 14 C 0.11 1.54 6.43 -3.72 -0.02 1.52 16 15 C -0.09 -1.17 6.13 -28.09 -0.17 -1.35 16 16 C 0.19 2.87 6.65 -82.41 -0.55 2.32 16 17 N -0.52 -7.89 10.31 -11.00 -0.11 -8.00 16 18 C 0.29 3.94 12.28 -92.32 -1.13 2.81 16 19 N -0.52 -7.75 10.45 -14.56 -0.15 -7.90 16 20 C 0.16 2.29 10.94 -17.13 -0.19 2.11 16 21 C -0.18 -2.77 5.82 -104.63 -0.61 -3.38 16 22 C 0.16 2.34 5.91 -5.13 -0.03 2.31 16 23 C -0.04 -0.88 4.16 -104.62 -0.44 -1.32 16 24 C -0.06 -1.35 8.07 -39.58 -0.32 -1.67 16 25 C -0.13 -2.47 10.05 -39.58 -0.40 -2.87 16 26 C -0.14 -2.37 10.05 -39.58 -0.40 -2.76 16 27 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 28 C -0.13 -2.49 8.37 -39.58 -0.33 -2.82 16 29 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.48 7.07 -51.93 -0.37 1.11 16 32 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.10 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.19 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.12 2.02 5.52 -51.93 -0.29 1.73 16 38 H 0.12 2.78 7.68 -52.49 -0.40 2.38 16 39 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 41 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.11 1.93 7.14 -52.49 -0.37 1.56 16 LS Contribution 344.12 15.07 5.19 5.19 Total: -1.00 -31.06 344.12 -9.97 -41.03 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.16 Total: 9.80 kcal Atomic # 6 Polarization: -1.48 SS G_CDS: -5.51 Total: -6.99 kcal Atomic # 7 Polarization: -50.67 SS G_CDS: 0.00 Total: -50.67 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.08 Total: -12.21 kcal Atomic # 14 Polarization: 18.42 SS G_CDS: -4.56 Total: 13.86 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.06 -9.97 -41.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438824693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.432 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds