Wall clock time and date at job start Tue Mar 31 2020 14:01:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86802 * 120.00006 * 2 1 4 4 H 1.48491 * 109.47200 * 273.69711 * 3 2 1 5 5 H 1.48502 * 109.46824 * 33.69707 * 3 2 1 6 6 H 1.48500 * 109.47021 * 153.69200 * 3 2 1 7 7 C 1.37879 * 119.99813 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00227 * 0.62939 * 7 2 1 9 9 C 1.50698 * 119.99742 * 180.63483 * 7 2 1 10 10 H 1.08999 * 109.47410 * 329.25072 * 9 7 2 11 11 C 1.50700 * 109.47240 * 209.24299 * 9 7 2 12 12 O 1.21278 * 119.99956 * 266.08654 * 11 9 7 13 13 N 1.34772 * 119.99605 * 86.08500 * 11 9 7 14 14 C 1.47229 * 121.31208 * 179.97438 * 13 11 9 15 15 C 1.52862 * 108.04316 * 115.79483 * 14 13 11 16 16 C 1.50414 * 110.74460 * 47.21726 * 15 14 13 17 17 N 1.32967 * 118.38659 * 160.66059 * 16 15 14 18 18 C 1.31580 * 121.10318 * 179.38997 * 17 16 15 19 19 N 1.31815 * 121.73027 * 0.02562 * 18 17 16 20 20 C 1.32210 * 120.58175 * 0.47073 * 19 18 17 21 21 C 1.37765 * 122.90120 * 340.41933 * 16 15 14 22 22 C 1.46798 * 121.31777 * 359.97438 * 13 11 9 23 23 C 1.50708 * 109.47108 * 89.24562 * 9 7 2 24 24 C 1.38231 * 119.99805 * 51.42636 * 23 9 7 25 25 C 1.38243 * 119.99764 * 179.78907 * 24 23 9 26 26 C 1.38230 * 119.99929 * 0.43892 * 25 24 23 27 27 C 1.38241 * 120.00079 * 359.81290 * 26 25 24 28 28 C 1.38231 * 119.99825 * 359.97438 * 27 26 25 29 29 H 0.96994 * 119.99796 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.75040 * 235.42907 * 14 13 11 31 31 H 1.09000 * 109.74768 * 356.11512 * 14 13 11 32 32 H 1.08997 * 109.22746 * 167.55171 * 15 14 13 33 33 H 1.09000 * 109.22359 * 286.90253 * 15 14 13 34 34 H 1.07999 * 119.13408 * 180.02562 * 18 17 16 35 35 H 1.07999 * 120.38221 * 179.70292 * 20 19 18 36 36 H 1.08994 * 109.47107 * 104.21005 * 22 13 11 37 37 H 1.09007 * 109.46388 * 344.22327 * 22 13 11 38 38 H 1.07998 * 120.00370 * 359.97438 * 24 23 9 39 39 H 1.08004 * 119.99651 * 180.27348 * 25 24 23 40 40 H 1.08000 * 120.00194 * 179.83703 * 26 25 24 41 41 H 1.08002 * 119.99831 * 179.97438 * 27 26 25 42 42 H 1.07997 * 119.99739 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4185 2.0916 -1.3971 5 1 1.4879 2.6288 0.7768 6 1 3.5836 1.4189 0.6205 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0112 9 6 3.5115 -1.1941 0.0139 10 1 3.8798 -0.3078 -0.5027 11 6 4.0205 -2.4297 -0.6827 12 8 4.2841 -3.4234 -0.0394 13 7 4.1828 -2.4303 -2.0206 14 6 4.6787 -3.6209 -2.7307 15 6 3.5684 -4.1161 -3.6574 16 6 2.9796 -2.9749 -4.4406 17 7 2.2989 -3.2532 -5.5484 18 6 1.7512 -2.2973 -6.2679 19 7 1.8518 -1.0282 -5.9262 20 6 2.5218 -0.6744 -4.8427 21 6 3.1109 -1.6580 -4.0578 22 6 3.8723 -1.2439 -2.8274 23 6 4.0002 -1.1839 1.4395 24 6 3.5181 -2.1134 2.3420 25 6 3.9696 -2.1068 3.6486 26 6 4.8964 -1.1650 4.0549 27 6 5.3746 -0.2323 3.1536 28 6 4.9264 -0.2416 1.8460 29 1 -0.4849 0.8400 0.0004 30 1 5.5591 -3.3596 -3.3178 31 1 4.9334 -4.3992 -2.0114 32 1 3.9793 -4.8517 -4.3488 33 1 2.7850 -4.5837 -3.0609 34 1 1.2048 -2.5594 -7.1618 35 1 2.6062 0.3668 -4.5683 36 1 4.7992 -0.7523 -3.1225 37 1 3.2661 -0.5538 -2.2403 38 1 2.7909 -2.8466 2.0257 39 1 3.5962 -2.8358 4.3527 40 1 5.2472 -1.1582 5.0763 41 1 6.0984 0.5038 3.4711 42 1 5.2996 0.4873 1.1420 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001438824693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:12 Heat of formation + Delta-G solvation = 26.251088 kcal Electronic energy + Delta-G solvation = -27396.622943 eV Core-core repulsion = 23726.842602 eV Total energy + Delta-G solvation = -3669.780341 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.38404 -41.06349 -39.58217 -37.61248 -35.69165 -35.14079 -33.45222 -33.15860 -32.13744 -31.60269 -29.47137 -27.51517 -26.22248 -25.18720 -24.29942 -23.40859 -23.20722 -21.87378 -20.08005 -19.07541 -18.74503 -18.21288 -17.59657 -17.41333 -17.06112 -16.54398 -16.38149 -15.88357 -15.74808 -15.35000 -15.04785 -14.89862 -14.72244 -14.60602 -14.41381 -14.26025 -14.01485 -13.57579 -13.48906 -13.41993 -13.09072 -12.89100 -12.68207 -12.54997 -12.09888 -12.02969 -11.91674 -11.60159 -11.50711 -11.44506 -10.78091 -10.60640 -10.29775 -10.28441 -9.69411 -9.59217 -9.34977 -8.33617 -6.44012 -0.12481 -0.00989 0.65324 0.72644 1.34090 1.43624 1.52830 1.75636 2.04745 2.33799 2.69719 2.98912 3.00927 3.15442 3.24864 3.41064 3.57722 3.73406 3.97315 4.10283 4.15830 4.19356 4.24678 4.36511 4.39042 4.43652 4.44744 4.51284 4.59372 4.65419 4.76144 4.85239 4.88385 4.92037 4.93589 5.21502 5.35279 5.39447 5.40866 5.51061 5.72451 5.77850 5.92024 5.97260 6.18013 6.30735 6.42606 6.60392 7.04004 7.20780 7.29362 8.81414 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.014539 B = 0.005008 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.372116 B = 5589.876072 C = 6689.230772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.032 3.968 3 Si 0.911 3.089 4 H -0.241 1.241 5 H -0.297 1.297 6 H -0.214 1.214 7 C -0.499 4.499 8 H 0.019 0.981 9 C 0.040 3.960 10 H 0.078 0.922 11 C 0.540 3.460 12 O -0.578 6.578 13 N -0.617 5.617 14 C 0.113 3.887 15 C -0.082 4.082 16 C 0.174 3.826 17 N -0.537 5.537 18 C 0.282 3.718 19 N -0.534 5.534 20 C 0.155 3.845 21 C -0.196 4.196 22 C 0.154 3.846 23 C -0.068 4.068 24 C -0.097 4.097 25 C -0.140 4.140 26 C -0.134 4.134 27 C -0.128 4.128 28 C -0.140 4.140 29 H 0.269 0.731 30 H 0.106 0.894 31 H 0.093 0.907 32 H 0.124 0.876 33 H 0.072 0.928 34 H 0.225 0.775 35 H 0.192 0.808 36 H 0.122 0.878 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.128 0.872 40 H 0.148 0.852 41 H 0.150 0.850 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.746 1.064 -6.473 14.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.167 4.167 3 Si 0.732 3.268 4 H -0.165 1.165 5 H -0.223 1.223 6 H -0.137 1.137 7 C -0.536 4.536 8 H 0.037 0.963 9 C 0.018 3.982 10 H 0.096 0.904 11 C 0.331 3.669 12 O -0.457 6.457 13 N -0.349 5.349 14 C -0.009 4.009 15 C -0.120 4.120 16 C 0.030 3.970 17 N -0.251 5.251 18 C -0.006 4.006 19 N -0.248 5.248 20 C -0.012 4.012 21 C -0.201 4.201 22 C 0.031 3.969 23 C -0.069 4.069 24 C -0.115 4.115 25 C -0.158 4.158 26 C -0.152 4.152 27 C -0.146 4.146 28 C -0.158 4.158 29 H 0.078 0.922 30 H 0.124 0.876 31 H 0.112 0.888 32 H 0.142 0.858 33 H 0.090 0.910 34 H 0.241 0.759 35 H 0.209 0.791 36 H 0.140 0.860 37 H 0.115 0.885 38 H 0.102 0.898 39 H 0.146 0.854 40 H 0.166 0.834 41 H 0.168 0.832 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 12.211 0.367 -6.968 14.064 hybrid contribution -0.695 0.517 0.733 1.135 sum 11.517 0.884 -6.235 13.126 Atomic orbital electron populations 1.70032 1.08592 1.28452 1.50434 1.25820 0.95286 1.02765 0.92876 0.86292 0.81630 0.78174 0.80712 1.16497 1.22333 1.13662 1.20306 0.87939 0.92906 1.52484 0.96268 1.18294 0.95688 0.93569 0.90601 0.90386 1.21025 0.74112 0.90182 0.81579 1.90560 1.52636 1.36815 1.65718 1.48046 1.66011 1.14986 1.05884 1.21726 0.96008 0.88351 0.94849 1.20752 0.98729 0.94982 0.97538 1.21385 0.91061 0.93800 0.90710 1.68429 1.10729 1.39104 1.06857 1.25496 0.93039 0.83649 0.98411 1.68504 1.17339 1.21516 1.17454 1.23566 0.88123 1.01340 0.88205 1.21469 1.03119 0.95598 0.99936 1.20566 1.00235 0.87824 0.88319 1.20163 0.94869 0.95350 0.96479 1.20847 0.98605 0.98092 0.94004 1.21337 0.98903 1.00240 0.95367 1.21349 0.97702 0.95456 1.00656 1.21380 1.00695 0.99629 0.92898 1.21334 0.97724 0.99016 0.97744 0.92233 0.87619 0.88833 0.85813 0.90981 0.75925 0.79101 0.86048 0.88467 0.89823 0.85368 0.83435 0.83229 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.32 13.96 21.45 0.30 -55.02 16 2 C 0.03 1.70 5.47 84.65 0.46 2.16 16 3 Si 0.91 37.36 26.80 68.60 1.84 39.20 16 4 H -0.24 -8.66 7.11 99.48 0.71 -7.96 16 5 H -0.30 -12.90 7.11 99.48 0.71 -12.19 16 6 H -0.21 -7.72 4.29 99.48 0.43 -7.30 16 7 C -0.50 -26.49 7.60 25.60 0.19 -26.30 16 8 H 0.02 1.21 8.06 -2.91 -0.02 1.19 16 9 C 0.04 1.73 1.02 -13.03 -0.01 1.72 16 10 H 0.08 2.98 3.96 -2.39 -0.01 2.97 16 11 C 0.54 22.69 6.79 87.66 0.60 23.28 16 12 O -0.58 -27.29 14.76 -3.02 -0.04 -27.33 16 13 N -0.62 -20.55 2.94 -824.18 -2.42 -22.97 16 14 C 0.11 3.00 6.43 86.19 0.55 3.55 16 15 C -0.08 -2.17 6.13 29.71 0.18 -1.99 16 16 C 0.17 5.17 6.65 42.19 0.28 5.46 16 17 N -0.54 -15.68 10.31 -188.72 -1.95 -17.63 16 18 C 0.28 7.41 12.28 180.94 2.22 9.63 16 19 N -0.53 -15.12 10.45 -199.99 -2.09 -17.21 16 20 C 0.16 4.24 10.94 84.81 0.93 5.17 16 21 C -0.20 -5.71 5.82 -19.87 -0.12 -5.82 16 22 C 0.15 4.39 5.91 85.51 0.51 4.90 16 23 C -0.07 -2.88 4.16 -19.86 -0.08 -2.96 16 24 C -0.10 -4.32 8.07 22.27 0.18 -4.14 16 25 C -0.14 -5.10 10.05 22.27 0.22 -4.88 16 26 C -0.13 -4.06 10.05 22.27 0.22 -3.83 16 27 C -0.13 -3.85 10.05 22.27 0.22 -3.63 16 28 C -0.14 -4.96 8.37 22.27 0.19 -4.77 16 29 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 30 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.09 2.69 7.07 -2.39 -0.02 2.68 16 32 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.22 4.09 8.06 -2.91 -0.02 4.07 16 35 H 0.19 4.16 8.06 -2.91 -0.02 4.13 16 36 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.10 3.21 5.52 -2.38 -0.01 3.20 16 38 H 0.08 4.23 7.68 -2.91 -0.02 4.21 16 39 H 0.13 4.03 8.06 -2.91 -0.02 4.01 16 40 H 0.15 3.31 8.06 -2.91 -0.02 3.29 16 41 H 0.15 3.29 8.06 -2.91 -0.02 3.26 16 42 H 0.13 4.01 7.14 -2.91 -0.02 3.99 16 Total: -1.00 -73.63 344.12 3.16 -70.47 By element: Atomic # 1 Polarization: 32.16 SS G_CDS: 0.77 Total: 32.93 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: 6.75 Total: -2.45 kcal Atomic # 7 Polarization: -106.67 SS G_CDS: -6.16 Total: -112.83 kcal Atomic # 8 Polarization: -27.29 SS G_CDS: -0.04 Total: -27.33 kcal Atomic # 14 Polarization: 37.36 SS G_CDS: 1.84 Total: 39.20 kcal Total: -73.63 3.16 -70.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001438824693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.725 kcal (2) G-P(sol) polarization free energy of solvation -73.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds