Wall clock time and date at job start Tue Mar 31 2020 14:44:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37883 * 119.85940 * 2 1 4 4 C 1.38250 * 120.22553 * 180.02562 * 3 2 1 5 5 C 1.38269 * 119.82775 * 359.97438 * 4 3 2 6 6 C 1.38141 * 120.14586 * 359.97438 * 5 4 3 7 7 C 1.38595 * 120.47744 * 0.02562 * 6 5 4 8 8 N 1.39837 * 111.61314 * 180.02562 * 7 6 5 9 9 C 1.34785 * 124.97878 * 179.97438 * 8 7 6 10 10 O 1.21585 * 119.99493 * 352.68107 * 9 8 7 11 11 N 1.34769 * 119.99869 * 172.67737 * 9 8 7 12 12 C 1.39450 * 119.99878 * 184.40243 * 11 9 8 13 13 C 1.38653 * 119.65247 * 185.99742 * 12 11 9 14 14 C 1.40811 * 118.67503 * 179.97438 * 13 12 11 15 15 C 1.41552 * 120.99526 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99824 * 147.58012 * 15 14 13 17 17 C 1.40028 * 119.99892 * 327.57380 * 15 14 13 18 18 N 1.30740 * 119.99935 * 2.30512 * 17 15 14 19 19 Si 1.86797 * 120.00012 * 182.30759 * 17 15 14 20 20 H 1.48495 * 109.47520 * 89.99907 * 19 17 15 21 21 H 1.48503 * 109.47134 * 210.00220 * 19 17 15 22 22 H 1.48503 * 109.46784 * 329.99863 * 19 17 15 23 23 C 1.41167 * 118.00726 * 359.97438 * 14 13 12 24 24 C 1.36585 * 119.12954 * 0.02562 * 23 14 13 25 25 N 1.32066 * 121.25673 * 359.73973 * 24 23 14 26 26 C 1.46533 * 110.04385 * 359.97438 * 8 7 6 27 27 C 1.51218 * 130.97107 * 180.02562 * 6 5 4 28 28 H 1.09000 * 109.47072 * 249.15421 * 1 2 3 29 29 H 1.08996 * 109.47476 * 9.15604 * 1 2 3 30 30 H 1.09006 * 109.47252 * 129.15695 * 1 2 3 31 31 H 1.08001 * 119.88605 * 359.96211 * 3 2 1 32 32 H 1.08003 * 120.08846 * 179.97438 * 4 3 2 33 33 H 1.08000 * 119.92639 * 179.97438 * 5 4 3 34 34 H 0.96996 * 120.00563 * 4.40068 * 11 9 8 35 35 H 1.08001 * 120.65852 * 359.97438 * 13 12 11 36 36 H 0.96999 * 120.00027 * 180.02562 * 18 17 15 37 37 H 1.08000 * 120.43213 * 179.97438 * 23 14 13 38 38 H 1.07996 * 119.37246 * 180.02562 * 24 23 14 39 39 H 1.09004 * 110.29759 * 241.06812 * 26 8 7 40 40 H 1.09000 * 110.29697 * 118.93723 * 26 8 7 41 41 H 1.09002 * 110.41490 * 61.21929 * 27 6 5 42 42 H 1.09001 * 110.41348 * 298.77241 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1935 1.1958 0.0000 4 6 3.5759 1.2046 -0.0005 5 6 4.2713 0.0095 -0.0005 6 6 3.5877 -1.1909 0.0005 7 6 2.2019 -1.2106 0.0011 8 7 1.7055 -2.5179 0.0027 9 6 0.3987 -2.8481 0.0041 10 8 -0.4464 -1.9844 0.1381 11 7 0.0289 -4.1357 -0.1432 12 6 -1.3226 -4.4670 -0.2339 13 6 -1.7018 -5.8004 -0.2596 14 6 -3.0721 -6.1115 -0.3511 15 6 -3.5139 -7.4560 -0.3814 16 1 -4.4640 -7.7222 0.0577 17 6 -2.7191 -8.4407 -0.9809 18 7 -1.5490 -8.1267 -1.4724 19 14 -3.3306 -10.2031 -1.0783 20 1 -4.0863 -10.3958 -2.3420 21 1 -2.1719 -11.1315 -1.0480 22 1 -4.2196 -10.4831 0.0777 23 6 -3.9920 -5.0425 -0.4116 24 6 -3.5237 -3.7598 -0.3800 25 7 -2.2312 -3.5042 -0.2891 26 6 2.8140 -3.4762 0.0028 27 6 4.0893 -2.6175 0.0013 28 1 -0.3633 -0.3657 0.9604 29 1 -0.3634 1.0145 -0.1635 30 1 -0.3634 -0.6489 -0.7969 31 1 1.6493 2.1287 -0.0006 32 1 4.1114 2.1426 -0.0010 33 1 5.3513 0.0146 -0.0014 34 1 0.7028 -4.8321 -0.1860 35 1 -0.9610 -6.5847 -0.2104 36 1 -0.9986 -8.8087 -1.8880 37 1 -5.0521 -5.2363 -0.4827 38 1 -4.2240 -2.9389 -0.4257 39 1 2.7760 -4.0985 -0.8914 40 1 2.7773 -4.0968 0.8981 41 1 4.6797 -2.8125 0.8966 42 1 4.6789 -2.8137 -0.8942 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001467116492.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:29 Heat of formation + Delta-G solvation = 85.760820 kcal Electronic energy + Delta-G solvation = -26616.859517 eV Core-core repulsion = 22949.659711 eV Total energy + Delta-G solvation = -3667.199806 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.23596 -39.24502 -37.89270 -36.48592 -34.60369 -33.85211 -32.77469 -30.85863 -30.47422 -29.24136 -28.36973 -26.50360 -26.03171 -23.72016 -22.75580 -21.95162 -21.17735 -21.02954 -19.22559 -18.31346 -17.55399 -16.40898 -16.34570 -15.85523 -15.39629 -15.21082 -15.02059 -14.61215 -14.23128 -14.04678 -13.89667 -13.24612 -13.12466 -12.90170 -12.83968 -12.64711 -12.60074 -12.46554 -12.00070 -11.77906 -11.72879 -11.44903 -11.25452 -11.20831 -10.93893 -10.72856 -10.31251 -10.21096 -10.12410 -9.68102 -9.44522 -8.77372 -8.50361 -7.94770 -7.76968 -7.44913 -7.08033 -6.73075 -4.68166 1.40030 1.44037 2.59724 2.64997 2.78097 3.00120 3.04290 3.18307 3.52102 3.84864 3.94962 4.03947 4.42954 4.52804 4.67989 4.93328 4.99408 5.07270 5.22549 5.36014 5.47902 5.50455 5.60033 5.69942 5.70908 5.81175 5.98948 6.09033 6.26459 6.42952 6.47676 6.53271 6.55648 6.59835 6.73525 6.76256 6.92320 6.97842 7.12009 7.18068 7.26230 7.37365 7.45279 7.83687 8.00179 8.20702 8.41760 8.67661 8.73918 9.01593 9.61306 10.10999 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.022680 B = 0.003119 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.292160 B = 8974.449791 C =10123.259756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.093 4.093 3 C -0.098 4.098 4 C -0.148 4.148 5 C -0.087 4.087 6 C -0.148 4.148 7 C 0.176 3.824 8 N -0.573 5.573 9 C 0.686 3.314 10 O -0.492 6.492 11 N -0.658 5.658 12 C 0.349 3.651 13 C -0.233 4.233 14 C 0.142 3.858 15 C -0.456 4.456 16 H 0.081 0.919 17 C 0.073 3.927 18 N -0.804 5.804 19 Si 0.918 3.082 20 H -0.269 1.269 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.275 4.275 24 C 0.117 3.883 25 N -0.549 5.549 26 C 0.096 3.904 27 C -0.079 4.079 28 H 0.082 0.918 29 H 0.024 0.976 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.403 0.597 35 H 0.137 0.863 36 H 0.279 0.721 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.639 8.102 1.652 15.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C -0.117 4.117 4 C -0.168 4.168 5 C -0.106 4.106 6 C -0.152 4.152 7 C 0.079 3.921 8 N -0.301 5.301 9 C 0.391 3.609 10 O -0.363 6.363 11 N -0.306 5.306 12 C 0.123 3.877 13 C -0.258 4.258 14 C 0.133 3.867 15 C -0.488 4.488 16 H 0.099 0.901 17 C -0.144 4.144 18 N -0.431 5.431 19 Si 0.743 3.257 20 H -0.194 1.194 21 H -0.202 1.202 22 H -0.185 1.185 23 C -0.299 4.299 24 C -0.037 4.037 25 N -0.268 5.268 26 C -0.027 4.027 27 C -0.116 4.116 28 H 0.100 0.900 29 H 0.043 0.957 30 H 0.121 0.879 31 H 0.142 0.858 32 H 0.139 0.861 33 H 0.138 0.862 34 H 0.238 0.762 35 H 0.154 0.846 36 H 0.090 0.910 37 H 0.121 0.879 38 H 0.141 0.859 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.357 9.388 1.661 15.608 hybrid contribution -0.033 -2.219 -0.270 2.236 sum 12.324 7.169 1.391 14.325 Atomic orbital electron populations 1.21428 0.88632 0.98444 1.06218 1.19751 0.97762 0.90181 1.01920 1.20792 0.94031 0.96717 1.00126 1.20905 0.94150 0.97469 1.04235 1.20227 0.99199 0.90515 1.00631 1.19913 0.92390 0.95048 1.07814 1.18045 0.91891 0.84334 0.97823 1.45076 1.04979 1.05123 1.74944 1.16123 0.81887 0.83776 0.79157 1.91422 1.50041 1.43123 1.51763 1.42742 1.06945 1.06555 1.74327 1.17993 0.82205 0.90100 0.97409 1.21776 0.98504 0.92543 1.13008 1.17612 0.90349 0.93050 0.85674 1.19551 1.04561 0.91447 1.33276 0.90098 1.25920 0.94010 1.01233 0.93190 1.69703 1.09190 1.35455 1.28797 0.86144 0.79179 0.80650 0.79744 1.19412 1.20188 1.18547 1.21778 0.99492 0.93820 1.14761 1.21474 0.90769 0.94909 0.96570 1.67145 1.01443 1.34892 1.23343 1.22122 0.85300 0.92380 1.02850 1.21007 0.96638 0.90497 1.03505 0.89993 0.95698 0.87926 0.85838 0.86055 0.86204 0.76225 0.84562 0.90952 0.87870 0.85876 0.90122 0.90150 0.89383 0.89363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.60 7.82 36.00 0.28 -1.31 16 2 C -0.09 -1.47 5.91 -104.25 -0.62 -2.08 16 3 C -0.10 -1.26 9.64 -39.71 -0.38 -1.65 16 4 C -0.15 -1.64 10.06 -39.57 -0.40 -2.04 16 5 C -0.09 -0.96 10.04 -39.61 -0.40 -1.35 16 6 C -0.15 -1.85 6.23 -104.27 -0.65 -2.50 16 7 C 0.18 2.74 6.61 -83.57 -0.55 2.18 16 8 N -0.57 -9.10 3.13 -118.26 -0.37 -9.47 16 9 C 0.69 13.40 8.34 -86.92 -0.72 12.68 16 10 O -0.49 -10.82 7.72 5.29 0.04 -10.78 16 11 N -0.66 -12.98 5.35 -15.86 -0.08 -13.07 16 12 C 0.35 8.30 7.41 -154.68 -1.15 7.15 16 13 C -0.23 -5.79 8.62 -38.46 -0.33 -6.12 16 14 C 0.14 3.66 5.59 -106.55 -0.60 3.06 16 15 C -0.46 -11.56 9.12 -37.65 -0.34 -11.90 16 16 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 17 C 0.07 1.75 5.43 -17.35 -0.09 1.65 16 18 N -0.80 -19.51 10.60 55.55 0.59 -18.92 16 19 Si 0.92 17.90 29.56 -169.99 -5.02 12.88 16 20 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 21 H -0.28 -5.26 7.11 56.52 0.40 -4.86 16 22 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 23 C -0.27 -6.60 9.85 -39.07 -0.38 -6.98 16 24 C 0.12 2.73 11.10 -18.05 -0.20 2.52 16 25 N -0.55 -13.60 7.89 -12.76 -0.10 -13.70 16 26 C 0.10 1.09 6.37 -3.64 -0.02 1.07 16 27 C -0.08 -0.76 6.93 -27.25 -0.19 -0.95 16 28 H 0.08 1.59 6.62 -51.92 -0.34 1.25 16 29 H 0.02 0.38 7.89 -51.93 -0.41 -0.03 16 30 H 0.10 2.10 5.77 -55.80 -0.32 1.77 16 31 H 0.12 1.35 7.95 -52.49 -0.42 0.93 16 32 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 33 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.40 6.68 7.61 -40.82 -0.31 6.37 16 35 H 0.14 3.39 6.15 -52.49 -0.32 3.07 16 36 H 0.28 6.17 8.29 -40.82 -0.34 5.84 16 37 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 38 H 0.12 2.51 8.06 -52.49 -0.42 2.09 16 39 H 0.08 0.82 8.08 -51.93 -0.42 0.40 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 LS Contribution 343.47 15.07 5.18 5.18 Total: -1.00 -30.08 343.47 -11.57 -41.65 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: -5.05 Total: 12.80 kcal Atomic # 6 Polarization: 0.18 SS G_CDS: -6.75 Total: -6.56 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: 0.03 Total: -55.16 kcal Atomic # 8 Polarization: -10.82 SS G_CDS: 0.04 Total: -10.78 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.02 Total: 12.88 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.08 -11.57 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001467116492.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.409 kcal (2) G-P(sol) polarization free energy of solvation -30.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds