Wall clock time and date at job start Tue Mar 31 2020 14:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38300 * 119.89083 * 2 1 4 4 C 1.38231 * 119.82410 * 180.02562 * 3 2 1 5 5 C 1.38188 * 120.15085 * 0.02562 * 4 3 2 6 6 C 1.38552 * 120.47103 * 359.97438 * 5 4 3 7 7 C 1.37850 * 119.88749 * 179.73370 * 2 1 3 8 8 N 1.39841 * 111.61510 * 179.97438 * 6 5 4 9 9 C 1.34777 * 124.97604 * 180.02562 * 8 6 5 10 10 O 1.21585 * 120.00148 * 359.94518 * 9 8 6 11 11 N 1.34776 * 119.99951 * 179.97438 * 9 8 6 12 12 C 1.39454 * 120.00234 * 174.96942 * 11 9 8 13 13 C 1.38645 * 119.64908 * 185.36205 * 12 11 9 14 14 C 1.40826 * 118.67273 * 180.02562 * 13 12 11 15 15 C 1.41539 * 120.99465 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99828 * 151.72834 * 15 14 13 17 17 C 1.40039 * 120.00196 * 331.73056 * 15 14 13 18 18 N 1.30735 * 120.00023 * 350.16186 * 17 15 14 19 19 Si 1.86802 * 119.99986 * 170.16321 * 17 15 14 20 20 H 1.48504 * 109.46977 * 89.99617 * 19 17 15 21 21 H 1.48495 * 109.47077 * 210.00168 * 19 17 15 22 22 H 1.48506 * 109.46929 * 329.99940 * 19 17 15 23 23 C 1.41159 * 118.00571 * 359.97438 * 14 13 12 24 24 C 1.36592 * 119.12975 * 0.02562 * 23 14 13 25 25 N 1.32073 * 121.25774 * 359.71892 * 24 23 14 26 26 C 1.46529 * 110.04376 * 359.97438 * 8 6 5 27 27 C 1.51210 * 130.96822 * 179.97438 * 5 4 3 28 28 H 1.08993 * 109.47198 * 89.99027 * 1 2 3 29 29 H 1.08995 * 109.47095 * 209.99725 * 1 2 3 30 30 H 1.09001 * 109.46844 * 329.99393 * 1 2 3 31 31 H 1.07996 * 120.08510 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.92311 * 179.97438 * 4 3 2 33 33 H 1.07994 * 119.85184 * 359.97438 * 7 2 1 34 34 H 0.97005 * 120.00109 * 354.97104 * 11 9 8 35 35 H 1.08005 * 120.66612 * 0.02648 * 13 12 11 36 36 H 0.96994 * 120.00567 * 180.02562 * 18 17 15 37 37 H 1.07995 * 120.43825 * 179.97438 * 23 14 13 38 38 H 1.08000 * 119.37246 * 179.97438 * 24 23 14 39 39 H 1.09004 * 110.30062 * 241.07195 * 26 8 6 40 40 H 1.08997 * 110.38173 * 118.97291 * 26 8 6 41 41 H 1.09004 * 110.41588 * 298.81540 * 27 5 4 42 42 H 1.09004 * 110.41704 * 61.26193 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1990 0.0000 4 6 3.5785 1.1974 -0.0005 5 6 4.2712 0.0017 -0.0016 6 6 3.5901 -1.2049 -0.0016 7 6 2.1939 -1.1952 0.0056 8 7 4.4690 -2.2926 -0.0034 9 6 4.0956 -3.5876 -0.0043 10 8 2.9155 -3.8800 -0.0026 11 7 5.0304 -4.5584 -0.0065 12 6 4.6476 -5.8953 0.0985 13 6 5.6176 -6.8799 0.2078 14 6 5.2080 -8.2232 0.3121 15 6 6.1565 -9.2677 0.4255 16 1 5.8960 -10.1800 0.9416 17 6 7.4327 -9.1182 -0.1313 18 7 7.6885 -8.1049 -0.9168 19 14 8.7694 -10.3666 0.2481 20 1 8.7290 -11.4568 -0.7594 21 1 10.0958 -9.7004 0.2039 22 1 8.5460 -10.9351 1.6018 23 6 3.8233 -8.4968 0.3001 24 6 2.9415 -7.4596 0.1885 25 7 3.3608 -6.2105 0.0976 26 6 5.8553 -1.8180 -0.0053 27 6 5.7561 -0.2838 -0.0029 28 1 -0.3633 0.0002 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6558 2.1341 -0.0004 32 1 4.1183 2.1328 -0.0010 33 1 1.6497 -2.1279 0.0103 34 1 5.9696 -4.3273 -0.0811 35 1 6.6664 -6.6218 0.2130 36 1 8.5723 -8.0015 -1.3028 37 1 3.4656 -9.5129 0.3773 38 1 1.8812 -7.6645 0.1785 39 1 6.3719 -2.1631 -0.9010 40 1 6.3761 -2.1637 0.8877 41 1 6.2218 0.1283 -0.8981 42 1 6.2230 0.1263 0.8927 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001563139869.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:23 Heat of formation + Delta-G solvation = 43.729154 kcal Electronic energy + Delta-G solvation = -26104.871078 eV Core-core repulsion = 22435.848642 eV Total energy + Delta-G solvation = -3669.022435 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.11117 -39.29417 -37.95319 -36.52427 -34.44738 -33.83341 -32.72566 -30.67170 -30.58748 -29.98365 -28.30153 -26.35635 -26.03729 -23.72777 -22.85671 -22.00258 -21.48140 -20.59003 -19.56510 -18.04753 -17.66831 -16.30072 -16.23809 -15.66636 -15.39859 -15.17926 -15.05366 -14.45719 -14.25206 -14.09044 -13.72318 -13.66396 -13.48504 -12.90891 -12.75487 -12.68961 -12.58496 -12.44118 -12.26118 -11.96764 -11.79474 -11.59101 -11.46944 -11.22244 -10.96096 -10.89841 -10.33276 -10.20240 -10.10163 -9.80378 -9.64478 -9.43334 -8.58637 -8.00226 -7.80482 -7.67929 -7.09385 -6.80282 -4.66505 1.34184 1.47480 2.60455 2.63178 2.76491 2.99193 3.03702 3.19043 3.55667 3.82908 3.90011 4.00721 4.41740 4.51937 4.66320 4.89358 4.92016 5.02063 5.10845 5.32849 5.42722 5.47574 5.58307 5.60687 5.63249 5.69801 5.77573 5.81653 5.92239 6.08500 6.25658 6.41877 6.47909 6.54867 6.58436 6.71924 6.75723 6.90842 7.05959 7.10796 7.24531 7.35810 7.41282 7.80000 7.97476 8.19141 8.39510 8.66723 8.71722 8.93934 9.63584 10.06949 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021763 B = 0.002926 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.264990 B = 9567.585853 C =10764.136244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.060 4.060 3 C -0.154 4.154 4 C -0.075 4.075 5 C -0.157 4.157 6 C 0.184 3.816 7 C -0.137 4.137 8 N -0.573 5.573 9 C 0.702 3.298 10 O -0.508 6.508 11 N -0.659 5.659 12 C 0.350 3.650 13 C -0.237 4.237 14 C 0.145 3.855 15 C -0.455 4.455 16 H 0.082 0.918 17 C 0.076 3.924 18 N -0.796 5.796 19 Si 0.914 3.086 20 H -0.269 1.269 21 H -0.276 1.276 22 H -0.260 1.260 23 C -0.279 4.279 24 C 0.120 3.880 25 N -0.552 5.552 26 C 0.094 3.906 27 C -0.079 4.079 28 H 0.070 0.930 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.143 0.857 34 H 0.406 0.594 35 H 0.129 0.871 36 H 0.281 0.719 37 H 0.103 0.897 38 H 0.124 0.876 39 H 0.081 0.919 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.978 16.336 0.995 16.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.060 4.060 3 C -0.174 4.174 4 C -0.093 4.093 5 C -0.161 4.161 6 C 0.087 3.913 7 C -0.158 4.158 8 N -0.300 5.300 9 C 0.403 3.597 10 O -0.377 6.377 11 N -0.307 5.307 12 C 0.124 3.876 13 C -0.263 4.263 14 C 0.137 3.863 15 C -0.487 4.487 16 H 0.100 0.900 17 C -0.142 4.142 18 N -0.422 5.422 19 Si 0.738 3.262 20 H -0.194 1.194 21 H -0.201 1.201 22 H -0.184 1.184 23 C -0.303 4.303 24 C -0.034 4.034 25 N -0.271 5.271 26 C -0.029 4.029 27 C -0.116 4.116 28 H 0.089 0.911 29 H 0.087 0.913 30 H 0.084 0.916 31 H 0.140 0.860 32 H 0.139 0.861 33 H 0.161 0.839 34 H 0.241 0.759 35 H 0.147 0.853 36 H 0.092 0.908 37 H 0.121 0.879 38 H 0.141 0.859 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -2.266 16.717 0.800 16.889 hybrid contribution 2.008 -1.186 0.007 2.332 sum -0.259 15.531 0.807 15.554 Atomic orbital electron populations 1.20779 0.91038 1.02755 1.02364 1.19658 0.96012 0.92336 0.98042 1.20800 0.93660 0.97353 1.05538 1.20234 0.93718 0.95918 0.99444 1.19920 0.94994 0.92550 1.08596 1.18125 0.90923 0.85587 0.96664 1.20906 0.91369 0.99337 1.04141 1.45253 1.06718 1.03714 1.74307 1.15778 0.85873 0.78853 0.79147 1.90991 1.14869 1.79657 1.52215 1.42551 1.08976 1.04070 1.75076 1.17951 0.90772 0.81465 0.97380 1.21541 0.98520 0.91767 1.14452 1.17572 0.91328 0.91827 0.85604 1.19566 0.95767 1.01641 1.31713 0.89982 1.25941 0.99445 0.96135 0.92699 1.69739 1.22776 1.27644 1.22058 0.86212 0.79236 0.80547 0.80164 1.19374 1.20070 1.18421 1.21721 0.94522 0.98594 1.15437 1.21486 0.98178 0.87482 0.96254 1.67177 1.14829 1.21221 1.23908 1.22154 0.82806 0.94978 1.02954 1.20998 0.93186 0.93880 1.03519 0.91132 0.91290 0.91620 0.86043 0.86071 0.83941 0.75882 0.85283 0.90797 0.87858 0.85875 0.90048 0.90031 0.89364 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.15 10.01 36.01 0.36 -0.79 16 2 C -0.06 -0.77 5.87 -104.74 -0.61 -1.38 16 3 C -0.15 -1.71 9.71 -39.56 -0.38 -2.09 16 4 C -0.07 -0.81 10.04 -39.60 -0.40 -1.21 16 5 C -0.16 -1.96 6.23 -104.27 -0.65 -2.61 16 6 C 0.18 2.91 6.62 -83.57 -0.55 2.36 16 7 C -0.14 -2.19 9.10 -39.21 -0.36 -2.55 16 8 N -0.57 -9.34 3.13 -118.26 -0.37 -9.71 16 9 C 0.70 14.38 8.39 -86.92 -0.73 13.65 16 10 O -0.51 -12.23 12.77 5.29 0.07 -12.16 16 11 N -0.66 -13.39 5.34 -15.86 -0.08 -13.47 16 12 C 0.35 8.55 7.42 -154.68 -1.15 7.40 16 13 C -0.24 -5.96 8.60 -38.45 -0.33 -6.29 16 14 C 0.15 3.78 5.58 -106.55 -0.59 3.19 16 15 C -0.46 -11.57 9.13 -37.65 -0.34 -11.91 16 16 H 0.08 1.99 7.87 -52.48 -0.41 1.58 16 17 C 0.08 1.81 5.30 -17.34 -0.09 1.72 16 18 N -0.80 -19.37 10.83 55.55 0.60 -18.77 16 19 Si 0.91 17.75 29.57 -169.99 -5.03 12.73 16 20 H -0.27 -5.19 7.11 56.52 0.40 -4.79 16 21 H -0.28 -5.21 7.11 56.52 0.40 -4.81 16 22 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 23 C -0.28 -6.80 9.85 -39.07 -0.38 -7.19 16 24 C 0.12 2.88 11.10 -18.04 -0.20 2.68 16 25 N -0.55 -14.22 7.86 -12.75 -0.10 -14.32 16 26 C 0.09 1.07 6.33 -3.64 -0.02 1.05 16 27 C -0.08 -0.75 6.93 -27.25 -0.19 -0.94 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 30 H 0.06 0.54 8.08 -51.93 -0.42 0.12 16 31 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 32 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.14 2.63 6.28 -52.49 -0.33 2.31 16 34 H 0.41 6.82 7.64 -40.82 -0.31 6.50 16 35 H 0.13 3.21 6.27 -52.48 -0.33 2.88 16 36 H 0.28 6.19 8.29 -40.82 -0.34 5.85 16 37 H 0.10 2.30 8.06 -52.49 -0.42 1.88 16 38 H 0.12 2.59 8.06 -52.49 -0.42 2.17 16 39 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 352.46 15.07 5.31 5.31 Total: -1.00 -31.85 352.46 -11.39 -43.24 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: -5.16 Total: 12.08 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: -6.63 Total: -4.93 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: 0.05 Total: -56.27 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.07 Total: -12.16 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.85 -11.39 -43.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563139869.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.973 kcal (2) G-P(sol) polarization free energy of solvation -31.851 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds