Wall clock time and date at job start Tue Mar 31 2020 14:43:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38300 * 119.89083 * 2 1 4 4 C 1.38231 * 119.82410 * 180.02562 * 3 2 1 5 5 C 1.38188 * 120.15085 * 0.02562 * 4 3 2 6 6 C 1.38552 * 120.47103 * 359.97438 * 5 4 3 7 7 C 1.37850 * 119.88749 * 179.73370 * 2 1 3 8 8 N 1.39841 * 111.61510 * 179.97438 * 6 5 4 9 9 C 1.34777 * 124.97604 * 180.02562 * 8 6 5 10 10 O 1.21585 * 120.00148 * 359.94518 * 9 8 6 11 11 N 1.34776 * 119.99951 * 179.97438 * 9 8 6 12 12 C 1.39454 * 120.00234 * 174.96942 * 11 9 8 13 13 C 1.38645 * 119.64908 * 185.36205 * 12 11 9 14 14 C 1.40826 * 118.67273 * 180.02562 * 13 12 11 15 15 C 1.41539 * 120.99465 * 179.97438 * 14 13 12 16 16 H 1.08007 * 119.99828 * 151.72834 * 15 14 13 17 17 C 1.40039 * 120.00196 * 331.73056 * 15 14 13 18 18 N 1.30735 * 120.00023 * 350.16186 * 17 15 14 19 19 Si 1.86802 * 119.99986 * 170.16321 * 17 15 14 20 20 H 1.48504 * 109.46977 * 89.99617 * 19 17 15 21 21 H 1.48495 * 109.47077 * 210.00168 * 19 17 15 22 22 H 1.48506 * 109.46929 * 329.99940 * 19 17 15 23 23 C 1.41159 * 118.00571 * 359.97438 * 14 13 12 24 24 C 1.36592 * 119.12975 * 0.02562 * 23 14 13 25 25 N 1.32073 * 121.25774 * 359.71892 * 24 23 14 26 26 C 1.46529 * 110.04376 * 359.97438 * 8 6 5 27 27 C 1.51210 * 130.96822 * 179.97438 * 5 4 3 28 28 H 1.08993 * 109.47198 * 89.99027 * 1 2 3 29 29 H 1.08995 * 109.47095 * 209.99725 * 1 2 3 30 30 H 1.09001 * 109.46844 * 329.99393 * 1 2 3 31 31 H 1.07996 * 120.08510 * 359.97438 * 3 2 1 32 32 H 1.07997 * 119.92311 * 179.97438 * 4 3 2 33 33 H 1.07994 * 119.85184 * 359.97438 * 7 2 1 34 34 H 0.97005 * 120.00109 * 354.97104 * 11 9 8 35 35 H 1.08005 * 120.66612 * 0.02648 * 13 12 11 36 36 H 0.96994 * 120.00567 * 180.02562 * 18 17 15 37 37 H 1.07995 * 120.43825 * 179.97438 * 23 14 13 38 38 H 1.08000 * 119.37246 * 179.97438 * 24 23 14 39 39 H 1.09004 * 110.30062 * 241.07195 * 26 8 6 40 40 H 1.08997 * 110.38173 * 118.97291 * 26 8 6 41 41 H 1.09004 * 110.41588 * 298.81540 * 27 5 4 42 42 H 1.09004 * 110.41704 * 61.26193 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1990 0.0000 4 6 3.5785 1.1974 -0.0005 5 6 4.2712 0.0017 -0.0016 6 6 3.5901 -1.2049 -0.0016 7 6 2.1939 -1.1952 0.0056 8 7 4.4690 -2.2926 -0.0034 9 6 4.0956 -3.5876 -0.0043 10 8 2.9155 -3.8800 -0.0026 11 7 5.0304 -4.5584 -0.0065 12 6 4.6476 -5.8953 0.0985 13 6 5.6176 -6.8799 0.2078 14 6 5.2080 -8.2232 0.3121 15 6 6.1565 -9.2677 0.4255 16 1 5.8960 -10.1800 0.9416 17 6 7.4327 -9.1182 -0.1313 18 7 7.6885 -8.1049 -0.9168 19 14 8.7694 -10.3666 0.2481 20 1 8.7290 -11.4568 -0.7594 21 1 10.0958 -9.7004 0.2039 22 1 8.5460 -10.9351 1.6018 23 6 3.8233 -8.4968 0.3001 24 6 2.9415 -7.4596 0.1885 25 7 3.3608 -6.2105 0.0976 26 6 5.8553 -1.8180 -0.0053 27 6 5.7561 -0.2838 -0.0029 28 1 -0.3633 0.0002 -1.0276 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5139 31 1 1.6558 2.1341 -0.0004 32 1 4.1183 2.1328 -0.0010 33 1 1.6497 -2.1279 0.0103 34 1 5.9696 -4.3273 -0.0811 35 1 6.6664 -6.6218 0.2130 36 1 8.5723 -8.0015 -1.3028 37 1 3.4656 -9.5129 0.3773 38 1 1.8812 -7.6645 0.1785 39 1 6.3719 -2.1631 -0.9010 40 1 6.3761 -2.1637 0.8877 41 1 6.2218 0.1283 -0.8981 42 1 6.2230 0.1263 0.8927 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001563139869.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:22 Heat of formation + Delta-G solvation = 27.000562 kcal Electronic energy + Delta-G solvation = -26105.596484 eV Core-core repulsion = 22435.848642 eV Total energy + Delta-G solvation = -3669.747842 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.34192 -40.82802 -39.54440 -37.66851 -36.21736 -35.61772 -33.78572 -32.47517 -31.59484 -31.27250 -29.89091 -27.94344 -27.27147 -25.05878 -23.93062 -23.69177 -23.00086 -21.74964 -21.02250 -19.56884 -19.31101 -17.74974 -17.44925 -17.28230 -16.69501 -16.43048 -16.25875 -16.09239 -15.78992 -15.71530 -15.00124 -14.76538 -14.57077 -14.52969 -14.40169 -14.31792 -13.60770 -13.40323 -13.24359 -13.12886 -12.88371 -12.82062 -12.80791 -12.69630 -12.47807 -12.14720 -11.92495 -11.88999 -11.63560 -11.26195 -11.21704 -11.05563 -9.94271 -9.69332 -9.57200 -9.04612 -8.69467 -8.58409 -6.60018 0.32818 0.43989 0.80520 0.97199 1.25817 1.41448 1.52868 1.56869 2.06344 2.20372 2.65819 2.79819 2.86397 3.49877 3.60065 3.69933 3.99588 4.03932 4.12499 4.14150 4.22889 4.45369 4.52317 4.57071 4.67800 4.75368 4.76766 4.81315 4.87591 4.92456 4.98494 5.01552 5.03692 5.17812 5.22644 5.31345 5.43671 5.50011 5.51094 5.56457 5.72991 5.85058 5.92831 6.14347 6.18348 6.50041 6.63143 6.76339 6.81805 7.34439 7.78448 8.28476 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.021763 B = 0.002926 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.264990 B = 9567.585853 C =10764.136244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.070 4.070 3 C -0.144 4.144 4 C -0.070 4.070 5 C -0.150 4.150 6 C 0.139 3.861 7 C -0.170 4.170 8 N -0.572 5.572 9 C 0.696 3.304 10 O -0.556 6.556 11 N -0.651 5.651 12 C 0.347 3.653 13 C -0.251 4.251 14 C 0.117 3.883 15 C -0.483 4.483 16 H 0.085 0.915 17 C 0.037 3.963 18 N -0.818 5.818 19 Si 0.990 3.010 20 H -0.264 1.264 21 H -0.263 1.263 22 H -0.259 1.259 23 C -0.291 4.291 24 C 0.113 3.887 25 N -0.580 5.580 26 C 0.081 3.919 27 C -0.069 4.069 28 H 0.077 0.923 29 H 0.053 0.947 30 H 0.093 0.907 31 H 0.157 0.843 32 H 0.163 0.837 33 H 0.101 0.899 34 H 0.420 0.580 35 H 0.127 0.873 36 H 0.292 0.708 37 H 0.119 0.881 38 H 0.148 0.852 39 H 0.094 0.906 40 H 0.094 0.906 41 H 0.115 0.885 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.072 18.864 1.042 18.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.071 4.071 3 C -0.163 4.163 4 C -0.088 4.088 5 C -0.154 4.154 6 C 0.043 3.957 7 C -0.191 4.191 8 N -0.299 5.299 9 C 0.398 3.602 10 O -0.429 6.429 11 N -0.300 5.300 12 C 0.120 3.880 13 C -0.277 4.277 14 C 0.108 3.892 15 C -0.514 4.514 16 H 0.103 0.897 17 C -0.179 4.179 18 N -0.444 5.444 19 Si 0.810 3.190 20 H -0.189 1.189 21 H -0.188 1.188 22 H -0.182 1.182 23 C -0.315 4.315 24 C -0.040 4.040 25 N -0.300 5.300 26 C -0.040 4.040 27 C -0.106 4.106 28 H 0.096 0.904 29 H 0.072 0.928 30 H 0.111 0.889 31 H 0.175 0.825 32 H 0.180 0.820 33 H 0.119 0.881 34 H 0.258 0.742 35 H 0.145 0.855 36 H 0.103 0.897 37 H 0.137 0.863 38 H 0.165 0.835 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.133 0.867 42 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.193 19.321 0.840 19.341 hybrid contribution 1.321 -1.835 -0.039 2.261 sum 1.128 17.487 0.802 17.542 Atomic orbital electron populations 1.20822 0.89630 1.03343 1.03012 1.19960 0.97275 0.92050 0.97779 1.21260 0.94218 0.97670 1.03161 1.20747 0.93826 0.96780 0.97413 1.20354 0.96500 0.91629 1.06910 1.18527 0.91102 0.86663 0.99408 1.20857 0.92156 0.99114 1.06965 1.45189 1.09000 1.02239 1.73464 1.15949 0.85184 0.80188 0.78865 1.90953 1.16679 1.80961 1.54261 1.42398 1.09858 1.02892 1.74901 1.18158 0.90379 0.83007 0.96440 1.21507 0.98418 0.91909 1.15838 1.18006 0.92383 0.92624 0.86178 1.19861 0.97013 1.01810 1.32691 0.89678 1.26822 1.01074 0.98161 0.91851 1.69777 1.23902 1.28855 1.21873 0.85078 0.76232 0.77807 0.79846 1.18868 1.18761 1.18236 1.21908 0.94223 0.99469 1.15873 1.21921 0.99482 0.87148 0.95462 1.67299 1.15627 1.22021 1.25079 1.22574 0.80325 0.96845 1.04258 1.21111 0.91377 0.92008 1.06072 0.90405 0.92828 0.88870 0.82500 0.81977 0.88065 0.74184 0.85487 0.89716 0.86307 0.83460 0.88795 0.88782 0.86697 0.86688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 10.01 71.24 0.71 -1.53 16 2 C -0.07 -1.78 5.87 -19.94 -0.12 -1.90 16 3 C -0.14 -2.74 9.71 22.28 0.22 -2.52 16 4 C -0.07 -1.23 10.04 22.26 0.22 -1.01 16 5 C -0.15 -3.41 6.23 -19.64 -0.12 -3.53 16 6 C 0.14 4.46 6.62 38.27 0.25 4.72 16 7 C -0.17 -5.81 9.10 22.51 0.20 -5.60 16 8 N -0.57 -19.13 3.13 -646.33 -2.02 -21.15 16 9 C 0.70 30.13 8.39 179.05 1.50 31.63 16 10 O -0.56 -28.83 12.77 -3.98 -0.05 -28.88 16 11 N -0.65 -27.61 5.34 -322.36 -1.72 -29.33 16 12 C 0.35 17.72 7.42 132.76 0.99 18.70 16 13 C -0.25 -13.10 8.60 23.00 0.20 -12.90 16 14 C 0.12 6.27 5.58 -21.12 -0.12 6.15 16 15 C -0.48 -24.93 9.13 23.52 0.21 -24.72 16 16 H 0.09 4.19 7.87 -2.91 -0.02 4.17 16 17 C 0.04 1.77 5.30 85.29 0.45 2.22 16 18 N -0.82 -39.86 10.83 21.84 0.24 -39.62 16 19 Si 0.99 35.68 29.57 68.60 2.03 37.71 16 20 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 21 H -0.26 -8.90 7.11 99.48 0.71 -8.20 16 22 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 23 C -0.29 -14.66 9.85 22.60 0.22 -14.44 16 24 C 0.11 5.64 11.10 84.27 0.94 6.57 16 25 N -0.58 -31.34 7.86 -194.27 -1.53 -32.86 16 26 C 0.08 1.73 6.33 86.62 0.55 2.28 16 27 C -0.07 -1.07 6.93 30.26 0.21 -0.86 16 28 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.05 1.22 8.08 -2.39 -0.02 1.20 16 30 H 0.09 1.33 8.08 -2.39 -0.02 1.31 16 31 H 0.16 1.87 8.06 -2.91 -0.02 1.85 16 32 H 0.16 1.60 8.06 -2.91 -0.02 1.57 16 33 H 0.10 4.23 6.28 -2.91 -0.02 4.22 16 34 H 0.42 14.53 7.64 -92.70 -0.71 13.82 16 35 H 0.13 6.53 6.27 -2.91 -0.02 6.51 16 36 H 0.29 12.67 8.29 -92.71 -0.77 11.90 16 37 H 0.12 5.42 8.06 -2.91 -0.02 5.40 16 38 H 0.15 6.38 8.06 -2.91 -0.02 6.36 16 39 H 0.09 1.75 8.14 -2.38 -0.02 1.73 16 40 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.11 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -74.34 352.46 3.82 -70.52 By element: Atomic # 1 Polarization: 40.01 SS G_CDS: 0.35 Total: 40.37 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: 6.52 Total: 3.25 kcal Atomic # 7 Polarization: -117.94 SS G_CDS: -5.03 Total: -122.97 kcal Atomic # 8 Polarization: -28.83 SS G_CDS: -0.05 Total: -28.88 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.71 kcal Total: -74.34 3.82 -70.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001563139869.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.519 kcal (2) G-P(sol) polarization free energy of solvation -74.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds