Wall clock time and date at job start Tue Mar 31 2020 14:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86797 * 120.00090 * 2 1 4 4 H 1.48502 * 109.47335 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47006 * 300.00437 * 3 2 1 6 6 H 1.48503 * 109.47209 * 60.00039 * 3 2 1 7 7 C 1.37872 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99949 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00410 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.47232 * 180.02562 * 9 7 2 11 11 C 1.34776 * 119.99894 * 90.00365 * 10 9 7 12 12 O 1.21294 * 119.99506 * 174.42420 * 11 10 9 13 13 C 1.50694 * 120.00396 * 354.41853 * 11 10 9 14 14 H 1.08999 * 109.46925 * 40.00119 * 13 11 10 15 15 N 1.46894 * 109.47279 * 160.00626 * 13 11 10 16 16 C 1.53000 * 109.47140 * 280.00799 * 13 11 10 17 17 C 1.52999 * 109.47429 * 174.99784 * 16 13 11 18 18 C 1.50700 * 109.47336 * 179.97438 * 17 16 13 19 19 N 1.34775 * 119.99770 * 179.72383 * 18 17 16 20 20 O 1.21280 * 120.00230 * 0.02562 * 18 17 16 21 21 C 1.40025 * 119.99979 * 269.99734 * 10 9 7 22 22 C 1.38850 * 120.04811 * 123.80411 * 21 10 9 23 23 C 1.38110 * 119.95639 * 179.77379 * 22 21 10 24 24 C 1.38470 * 120.04468 * 0.50287 * 23 22 21 25 25 F 1.35104 * 119.95550 * 179.72892 * 24 23 22 26 26 C 1.38473 * 120.09274 * 359.74891 * 24 23 22 27 27 C 1.38109 * 120.04370 * 359.97438 * 26 24 23 28 28 H 0.97001 * 119.99977 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.47296 * 59.99818 * 9 7 2 30 30 H 1.09005 * 109.46890 * 300.00220 * 9 7 2 31 31 H 1.00894 * 111.00468 * 60.00283 * 15 13 11 32 32 H 1.00908 * 111.00303 * 183.95570 * 15 13 11 33 33 H 1.08998 * 109.47630 * 54.99569 * 16 13 11 34 34 H 1.09009 * 109.46921 * 294.99623 * 16 13 11 35 35 H 1.09006 * 109.46747 * 59.99622 * 17 16 13 36 36 H 1.09001 * 109.47098 * 300.00096 * 17 16 13 37 37 H 0.97004 * 120.00257 * 0.02562 * 19 18 17 38 38 H 0.97002 * 120.00042 * 179.97438 * 19 18 17 39 39 H 1.08002 * 120.01655 * 0.02562 * 22 21 10 40 40 H 1.08003 * 119.97930 * 180.23278 * 23 22 21 41 41 H 1.07998 * 119.98146 * 179.97438 * 26 24 23 42 42 H 1.08001 * 120.02657 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6127 -0.0005 11 6 2.6409 -4.1249 1.1667 12 8 3.3487 -5.1099 1.1691 13 6 2.2512 -3.4739 2.4687 14 1 1.2085 -3.1600 2.4201 15 7 2.4230 -4.4341 3.5670 16 6 3.1402 -2.2532 2.7147 17 6 2.6645 -1.5207 3.9709 18 6 3.5406 -0.3187 4.2135 19 7 3.3040 0.4855 5.2689 20 8 4.4550 -0.0719 3.4561 21 6 2.6580 -4.1448 -1.2132 22 6 4.0193 -4.2002 -1.4810 23 6 4.4661 -4.7298 -2.6757 24 6 3.5571 -5.1958 -3.6106 25 9 3.9959 -5.7085 -4.7810 26 6 2.1988 -5.1367 -3.3477 27 6 1.7481 -4.6131 -2.1518 28 1 -0.4850 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5570 0.8897 31 1 3.3821 -4.7404 3.6329 32 1 2.1075 -4.0430 4.4420 33 1 3.0807 -1.5818 1.8582 34 1 4.1721 -2.5769 2.8517 35 1 2.7241 -2.1922 4.8275 36 1 1.6327 -1.1970 3.8340 37 1 2.5701 0.2904 5.8725 38 1 3.8681 1.2590 5.4254 39 1 4.7284 -3.8331 -0.7538 40 1 5.5250 -4.7765 -2.8828 41 1 1.4914 -5.5003 -4.0783 42 1 0.6887 -4.5668 -1.9473 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574242541.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:04 Heat of formation + Delta-G solvation = -118.784230 kcal Electronic energy + Delta-G solvation = -28029.392649 eV Core-core repulsion = 23922.553880 eV Total energy + Delta-G solvation = -4106.838769 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.85679 -41.65838 -40.49173 -39.43469 -36.80487 -36.59893 -34.63968 -34.56708 -32.17202 -31.87135 -30.92305 -29.00122 -27.71395 -25.16751 -24.54150 -23.83737 -22.78399 -21.27289 -20.26546 -18.94278 -18.65324 -18.61711 -18.14372 -17.74966 -17.57446 -17.26283 -16.59138 -16.54608 -16.46481 -15.81562 -15.70465 -15.59922 -15.15390 -14.93557 -14.56054 -14.47322 -14.30499 -14.17545 -13.80512 -13.51935 -13.50063 -13.28778 -13.05059 -13.00390 -12.75321 -12.59492 -12.19063 -12.05943 -11.86524 -11.63767 -11.07297 -10.78951 -10.63753 -10.55335 -10.30000 -10.09795 -9.64118 -9.06246 -8.22709 -6.30706 0.09378 0.25400 1.30926 1.37275 1.49287 1.63177 1.67624 2.08974 2.37663 2.60632 2.67342 3.07814 3.26959 3.60616 3.74363 3.78406 3.90208 3.92355 4.07195 4.19389 4.24460 4.39016 4.43613 4.47897 4.53981 4.74008 4.89856 4.96930 5.07972 5.10422 5.15565 5.19012 5.40125 5.48434 5.63617 5.71583 5.91694 5.99424 6.01436 6.13888 6.44713 6.49433 6.64661 6.76617 7.23366 7.38164 7.39439 8.82283 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.011956 B = 0.004710 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.335410 B = 5943.210871 C = 7150.118250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.045 3.955 3 Si 0.929 3.071 4 H -0.288 1.288 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.526 4.526 8 H 0.047 0.953 9 C 0.250 3.750 10 N -0.558 5.558 11 C 0.522 3.478 12 O -0.569 6.569 13 C 0.097 3.903 14 H 0.111 0.889 15 N -0.827 5.827 16 C -0.143 4.143 17 C -0.129 4.129 18 C 0.510 3.490 19 N -0.838 5.838 20 O -0.596 6.596 21 C 0.139 3.861 22 C -0.103 4.103 23 C -0.137 4.137 24 C 0.073 3.927 25 F -0.142 7.142 26 C -0.129 4.129 27 C -0.109 4.109 28 H 0.268 0.732 29 H 0.031 0.969 30 H 0.047 0.953 31 H 0.347 0.653 32 H 0.361 0.639 33 H 0.088 0.912 34 H 0.048 0.952 35 H 0.126 0.874 36 H 0.112 0.888 37 H 0.420 0.580 38 H 0.404 0.596 39 H 0.115 0.885 40 H 0.155 0.845 41 H 0.166 0.834 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.574 -3.859 7.202 8.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.157 4.157 3 Si 0.757 3.243 4 H -0.213 1.213 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.564 4.564 8 H 0.065 0.935 9 C 0.131 3.869 10 N -0.284 5.284 11 C 0.312 3.688 12 O -0.448 6.448 13 C -0.018 4.018 14 H 0.129 0.871 15 N -0.361 5.361 16 C -0.183 4.183 17 C -0.169 4.169 18 C 0.296 3.704 19 N -0.403 5.403 20 O -0.476 6.476 21 C 0.047 3.953 22 C -0.123 4.123 23 C -0.156 4.156 24 C 0.053 3.947 25 F -0.120 7.120 26 C -0.148 4.148 27 C -0.129 4.129 28 H 0.078 0.922 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.161 0.839 32 H 0.177 0.823 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.144 0.856 36 H 0.130 0.870 37 H 0.251 0.749 38 H 0.235 0.765 39 H 0.133 0.867 40 H 0.173 0.827 41 H 0.183 0.817 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 0.758 -4.713 6.254 7.868 hybrid contribution 1.166 2.217 0.380 2.534 sum 1.924 -2.495 6.635 7.345 Atomic orbital electron populations 1.69951 1.06280 1.27836 1.50389 1.25182 0.95201 1.00541 0.94766 0.85949 0.78800 0.81749 0.77843 1.21335 1.20460 1.20245 1.21410 0.92788 0.91157 1.51059 0.93478 1.19366 0.87113 0.81781 0.98632 1.45943 1.45253 1.34078 1.03154 1.21017 0.78928 0.82837 0.86039 1.90599 1.39300 1.26973 1.87916 1.21122 1.01585 0.90322 0.88784 0.87097 1.58584 1.29203 1.41143 1.07153 1.22169 0.97853 0.97619 1.00679 1.21592 1.00540 0.95028 0.99696 1.21095 0.84109 0.85152 0.80070 1.43698 1.37066 1.30303 1.29197 1.90750 1.34558 1.74646 1.47678 1.18042 0.92954 0.96551 0.87775 1.20973 0.94737 0.99670 0.96892 1.21095 1.01014 1.00518 0.92958 1.17674 0.93078 1.00990 0.82916 1.91468 1.90274 1.84923 1.45364 1.21176 0.94126 1.01410 0.98122 1.21143 1.00395 0.97828 0.93510 0.92214 0.95114 0.93490 0.83947 0.82291 0.89328 0.93298 0.85608 0.86982 0.74871 0.76523 0.86664 0.82739 0.81652 0.83862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -46.32 13.29 21.45 0.28 -46.04 16 2 C 0.04 2.26 5.46 84.65 0.46 2.72 16 3 Si 0.93 42.71 29.54 68.60 2.03 44.73 16 4 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 5 H -0.28 -12.55 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 7 C -0.53 -26.00 6.96 25.60 0.18 -25.82 16 8 H 0.05 2.51 7.08 -2.91 -0.02 2.49 16 9 C 0.25 11.15 4.83 85.63 0.41 11.56 16 10 N -0.56 -23.18 2.57 -635.23 -1.63 -24.81 16 11 C 0.52 21.15 6.69 87.66 0.59 21.74 16 12 O -0.57 -25.19 15.60 -3.07 -0.05 -25.24 16 13 C 0.10 3.19 2.52 44.17 0.11 3.30 16 14 H 0.11 3.68 6.20 -2.39 -0.01 3.66 16 15 N -0.83 -22.07 8.94 -171.82 -1.54 -23.61 16 16 C -0.14 -4.87 4.08 30.59 0.12 -4.75 16 17 C -0.13 -3.18 5.47 29.85 0.16 -3.02 16 18 C 0.51 14.80 8.10 87.66 0.71 15.51 16 19 N -0.84 -15.32 8.87 -173.53 -1.54 -16.86 16 20 O -0.60 -24.40 16.82 -3.03 -0.05 -24.45 16 21 C 0.14 5.51 5.19 38.13 0.20 5.71 16 22 C -0.10 -3.89 8.93 22.39 0.20 -3.69 16 23 C -0.14 -4.38 10.02 22.29 0.22 -4.15 16 24 C 0.07 2.23 7.30 22.38 0.16 2.40 16 25 F -0.14 -4.10 17.27 44.97 0.78 -3.32 16 26 C -0.13 -3.79 10.02 22.30 0.22 -3.57 16 27 C -0.11 -3.72 9.30 22.39 0.21 -3.51 16 28 H 0.27 13.12 8.31 -92.71 -0.77 12.35 16 29 H 0.03 1.44 7.30 -2.38 -0.02 1.43 16 30 H 0.05 2.07 6.02 -2.38 -0.01 2.06 16 31 H 0.35 9.54 8.58 -89.70 -0.77 8.77 16 32 H 0.36 6.80 7.55 -89.69 -0.68 6.12 16 33 H 0.09 3.82 4.39 -2.39 -0.01 3.81 16 34 H 0.05 1.76 8.10 -2.38 -0.02 1.74 16 35 H 0.13 1.98 6.87 -2.38 -0.02 1.96 16 36 H 0.11 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.42 4.25 8.83 -92.71 -0.82 3.43 16 38 H 0.40 6.83 8.93 -92.71 -0.83 6.01 16 39 H 0.12 4.58 8.04 -2.91 -0.02 4.56 16 40 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 41 H 0.17 3.72 8.06 -2.91 -0.02 3.69 16 42 H 0.14 4.53 7.78 -2.91 -0.02 4.50 16 Total: -1.00 -69.15 357.29 0.28 -68.87 By element: Atomic # 1 Polarization: 38.28 SS G_CDS: -1.97 Total: 36.31 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: 3.97 Total: 14.43 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -4.42 Total: -111.32 kcal Atomic # 8 Polarization: -49.60 SS G_CDS: -0.10 Total: -49.69 kcal Atomic # 9 Polarization: -4.10 SS G_CDS: 0.78 Total: -3.32 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -69.15 0.28 -68.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574242541.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.916 kcal (2) G-P(sol) polarization free energy of solvation -69.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds