Wall clock time and date at job start Tue Mar 31 2020 14:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86800 * 120.00222 * 2 1 4 4 H 1.48491 * 109.47107 * 269.99589 * 3 2 1 5 5 H 1.48506 * 109.47076 * 29.99895 * 3 2 1 6 6 H 1.48496 * 109.47207 * 149.99613 * 3 2 1 7 7 C 1.39916 * 119.99759 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99946 * 175.56494 * 7 2 1 9 9 C 1.41126 * 120.00242 * 355.56616 * 7 2 1 10 10 C 1.40884 * 120.16333 * 214.78062 * 9 7 2 11 11 C 1.36354 * 119.83036 * 180.02562 * 10 9 7 12 12 C 1.39523 * 120.17004 * 0.02562 * 11 10 9 13 13 N 1.39101 * 119.83603 * 179.97438 * 12 11 10 14 14 C 1.34773 * 120.00307 * 35.31031 * 13 12 11 15 15 O 1.21522 * 119.99962 * 355.71507 * 14 13 12 16 16 C 1.48106 * 119.99827 * 175.71000 * 14 13 12 17 17 C 1.39364 * 119.75234 * 179.97438 * 16 14 13 18 18 C 1.38436 * 118.78715 * 180.09835 * 17 16 14 19 19 C 1.38932 * 118.78527 * 359.97438 * 18 17 16 20 20 C 1.38197 * 119.50491 * 359.80770 * 19 18 17 21 21 N 1.32176 * 120.27293 * 0.29349 * 20 19 18 22 22 C 1.50750 * 121.55679 * 180.58149 * 20 19 18 23 23 N 1.46606 * 110.47859 * 342.06658 * 22 20 19 24 24 C 1.47145 * 110.33811 * 52.82619 * 23 22 20 25 25 C 1.50607 * 118.63391 * 179.54051 * 19 18 17 26 26 C 1.39514 * 120.32233 * 0.25675 * 12 11 10 27 27 C 1.36360 * 120.16914 * 359.44460 * 26 12 11 28 28 H 0.97000 * 119.99854 * 0.02562 * 1 2 3 29 29 H 1.07995 * 120.08561 * 359.97438 * 10 9 7 30 30 H 1.08006 * 119.91707 * 180.02562 * 11 10 9 31 31 H 0.97002 * 119.99733 * 215.30984 * 13 12 11 32 32 H 1.08003 * 120.60251 * 0.08527 * 17 16 14 33 33 H 1.07997 * 120.61031 * 179.97438 * 18 17 16 34 34 H 1.09003 * 109.29983 * 102.36893 * 22 20 19 35 35 H 1.08998 * 109.30533 * 221.95625 * 22 20 19 36 36 H 1.00900 * 110.99472 * 289.34670 * 23 22 20 37 37 H 1.08999 * 109.63435 * 48.37567 * 24 23 22 38 38 H 1.09003 * 109.63440 * 168.77828 * 24 23 22 39 39 H 1.08997 * 109.39818 * 283.36896 * 25 19 18 40 40 H 1.09003 * 109.39265 * 43.08445 * 25 19 18 41 41 H 1.08000 * 119.91378 * 179.70080 * 26 12 11 42 42 H 1.08002 * 120.08505 * 180.26484 * 27 26 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6177 0.0000 4 1 2.4903 2.0463 -1.4000 5 1 1.4402 2.6527 0.7000 6 1 3.5402 1.4401 0.7001 7 6 2.0082 -1.2117 0.0005 8 1 3.0858 -1.2132 -0.0718 9 6 1.3057 -2.4321 0.0956 10 6 1.8650 -3.5180 0.7975 11 6 1.1806 -4.6941 0.8846 12 6 -0.0702 -4.8239 0.2804 13 7 -0.7621 -6.0271 0.3731 14 6 -0.6809 -6.7663 1.4971 15 8 0.0573 -6.4218 2.3989 16 6 -1.4913 -7.9985 1.6332 17 6 -1.4028 -8.7593 2.7975 18 6 -2.1677 -9.9084 2.9027 19 6 -2.9955 -10.2603 1.8439 20 6 -3.0396 -9.4588 0.7189 21 7 -2.2956 -8.3686 0.6479 22 6 -3.9307 -9.7897 -0.4511 23 7 -4.3472 -11.1943 -0.3975 24 6 -4.9371 -11.5030 0.9148 25 6 -3.8182 -11.5166 1.9576 26 6 -0.6278 -3.7548 -0.4214 27 6 0.0421 -2.5705 -0.5119 28 1 -0.4850 0.8401 -0.0004 29 1 2.8337 -3.4195 1.2647 30 1 1.6079 -5.5274 1.4228 31 1 -1.3031 -6.3340 -0.3712 32 1 -0.7494 -8.4580 3.6029 33 1 -2.1217 -10.5201 3.7915 34 1 -4.8135 -9.1508 -0.4237 35 1 -3.3871 -9.6133 -1.3793 36 1 -3.5730 -11.8089 -0.5995 37 1 -5.6716 -10.7407 1.1747 38 1 -5.4198 -12.4796 0.8787 39 1 -3.1791 -12.3840 1.7923 40 1 -4.2541 -11.5748 2.9550 41 1 -1.5944 -3.8641 -0.8907 42 1 -0.3927 -1.7424 -1.0519 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001580055816.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:00 Heat of formation + Delta-G solvation = 24.057168 kcal Electronic energy + Delta-G solvation = -25483.242796 eV Core-core repulsion = 21813.367319 eV Total energy + Delta-G solvation = -3669.875477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.12393 -39.51098 -37.59074 -36.90164 -34.53803 -33.79538 -32.86706 -31.38922 -30.38522 -29.56244 -28.82028 -25.97088 -25.01787 -24.14224 -23.08077 -21.95333 -21.18849 -20.59286 -19.82241 -17.83614 -17.27831 -17.11656 -16.63731 -16.02268 -15.35657 -15.19818 -15.10054 -15.03588 -14.60446 -14.20384 -14.12833 -13.87987 -13.45974 -13.23127 -13.01459 -12.69649 -12.58008 -12.24571 -12.11819 -12.05866 -11.70354 -11.52588 -11.36035 -11.15777 -11.00682 -10.73718 -10.27536 -10.00525 -9.90660 -9.50753 -9.44017 -9.18142 -9.09286 -8.98623 -8.87626 -7.54290 -6.85767 -6.61903 -4.33906 0.47884 0.94938 2.52642 2.93912 3.09222 3.10487 3.13752 3.22654 3.48972 3.75506 3.85668 3.91771 3.98464 4.18811 4.39977 4.51308 4.68798 4.70829 4.79886 4.83872 5.11129 5.14746 5.25837 5.34613 5.36105 5.49088 5.53116 5.65093 5.83502 5.91729 6.22013 6.32386 6.38198 6.44440 6.76233 6.82093 6.92707 7.06643 7.20202 7.29280 7.54377 7.64290 7.76503 7.87190 8.06534 8.27088 8.31839 8.61336 8.71520 8.92498 9.00009 10.28936 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.032085 B = 0.002291 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 872.480619 B =12217.180256 C =12757.533496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.069 3.931 3 Si 0.916 3.084 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.459 4.459 8 H 0.076 0.924 9 C 0.101 3.899 10 C -0.206 4.206 11 C -0.084 4.084 12 C -0.001 4.001 13 N -0.625 5.625 14 C 0.550 3.450 15 O -0.525 6.525 16 C 0.097 3.903 17 C -0.115 4.115 18 C -0.081 4.081 19 C -0.121 4.121 20 C 0.092 3.908 21 N -0.455 5.455 22 C 0.107 3.893 23 N -0.674 5.674 24 C 0.051 3.949 25 C -0.115 4.115 26 C -0.116 4.116 27 C -0.142 4.142 28 H 0.278 0.722 29 H 0.097 0.903 30 H 0.107 0.893 31 H 0.406 0.594 32 H 0.150 0.850 33 H 0.140 0.860 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.345 0.655 37 H 0.079 0.921 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.093 0.907 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.590 -20.807 1.440 22.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.146 4.146 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.094 0.906 9 C 0.098 3.902 10 C -0.226 4.226 11 C -0.104 4.104 12 C -0.093 4.093 13 N -0.266 5.266 14 C 0.335 3.665 15 O -0.402 6.402 16 C -0.043 4.043 17 C -0.136 4.136 18 C -0.106 4.106 19 C -0.124 4.124 20 C -0.048 4.048 21 N -0.167 5.167 22 C -0.024 4.024 23 N -0.301 5.301 24 C -0.078 4.078 25 C -0.154 4.154 26 C -0.136 4.136 27 C -0.162 4.162 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.241 0.759 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.163 0.837 37 H 0.098 0.902 38 H 0.105 0.895 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.926 -19.739 1.005 22.117 hybrid contribution 0.906 0.159 1.305 1.597 sum -9.020 -19.580 2.310 21.681 Atomic orbital electron populations 1.69762 1.07300 1.28753 1.37927 1.25899 0.94956 1.01214 0.92569 0.86184 0.80232 0.80442 0.79049 1.19507 1.20301 1.18719 1.19504 0.94757 0.90199 1.44515 0.90556 1.17744 0.92281 0.92010 0.88137 1.20801 1.01262 0.94905 1.05627 1.20406 0.92736 0.97853 0.99398 1.17296 0.94353 0.85782 1.11910 1.42803 1.47387 1.20499 1.15925 1.17834 0.82721 0.82955 0.82964 1.90773 1.38898 1.70127 1.40363 1.21328 0.95810 0.96017 0.91180 1.22146 0.98819 0.94050 0.98579 1.21526 0.94484 0.96166 0.98470 1.20620 0.98816 0.98190 0.94757 1.22070 0.95951 0.90720 0.96081 1.67440 1.04753 1.15236 1.29285 1.20905 0.96988 0.89815 0.94648 1.61037 1.35555 1.03682 1.29818 1.22158 0.95999 1.02877 0.86781 1.21219 0.97597 0.94518 1.02097 1.20333 0.98401 0.93024 1.01878 1.21199 0.97285 0.95543 1.02129 0.91104 0.88508 0.87468 0.75867 0.83214 0.84213 0.88421 0.88167 0.83722 0.90249 0.89489 0.89964 0.89677 0.88920 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.23 10.60 55.55 0.59 -20.64 16 2 C 0.07 1.75 5.42 -17.33 -0.09 1.66 16 3 Si 0.92 19.11 29.56 -169.99 -5.03 14.09 16 4 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 5 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.46 -12.32 9.02 -37.86 -0.34 -12.66 16 8 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 9 C 0.10 2.73 5.55 -106.80 -0.59 2.14 16 10 C -0.21 -5.28 9.74 -39.26 -0.38 -5.67 16 11 C -0.08 -2.06 8.61 -39.78 -0.34 -2.40 16 12 C 0.00 -0.02 6.30 -83.61 -0.53 -0.55 16 13 N -0.62 -12.12 5.29 -10.52 -0.06 -12.17 16 14 C 0.55 10.56 7.64 -12.21 -0.09 10.46 16 15 O -0.53 -11.62 13.75 5.35 0.07 -11.55 16 16 C 0.10 1.50 6.75 -83.12 -0.56 0.94 16 17 C -0.12 -1.49 9.64 -39.09 -0.38 -1.87 16 18 C -0.08 -0.79 9.79 -39.25 -0.38 -1.17 16 19 C -0.12 -1.13 5.78 -104.43 -0.60 -1.74 16 20 C 0.09 1.01 6.69 -82.43 -0.55 0.46 16 21 N -0.46 -6.28 9.40 -6.06 -0.06 -6.34 16 22 C 0.11 0.91 6.57 -5.11 -0.03 0.88 16 23 N -0.67 -4.61 6.95 -115.09 -0.80 -5.41 16 24 C 0.05 0.29 6.63 -3.71 -0.02 0.26 16 25 C -0.12 -0.67 5.83 -27.95 -0.16 -0.83 16 26 C -0.12 -2.73 9.90 -39.78 -0.39 -3.12 16 27 C -0.14 -3.69 8.61 -39.26 -0.34 -4.03 16 28 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 29 H 0.10 2.35 8.06 -52.49 -0.42 1.92 16 30 H 0.11 2.58 6.22 -52.48 -0.33 2.25 16 31 H 0.41 6.83 8.15 -40.82 -0.33 6.49 16 32 H 0.15 1.90 7.65 -52.48 -0.40 1.49 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.35 2.05 8.74 -39.29 -0.34 1.71 16 37 H 0.08 0.49 8.05 -51.93 -0.42 0.07 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 1.92 8.06 -52.49 -0.42 1.50 16 42 H 0.13 3.55 6.13 -52.49 -0.32 3.23 16 LS Contribution 351.31 15.07 5.29 5.29 Total: -1.00 -30.79 351.31 -10.86 -41.65 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -5.07 Total: 12.32 kcal Atomic # 6 Polarization: -11.44 SS G_CDS: -5.80 Total: -17.24 kcal Atomic # 7 Polarization: -44.24 SS G_CDS: -0.32 Total: -44.56 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.07 Total: -11.55 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.09 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.79 -10.86 -41.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580055816.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.704 kcal (2) G-P(sol) polarization free energy of solvation -30.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds