Wall clock time and date at job start Tue Mar 31 2020 14:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99811 * 2 1 4 4 H 1.48505 * 109.47139 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46916 * 299.99604 * 3 2 1 6 6 H 1.48500 * 109.47507 * 59.99763 * 3 2 1 7 7 C 1.37873 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99844 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00003 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46785 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99700 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00146 * 4.97409 * 11 10 9 13 13 N 1.34777 * 120.00069 * 184.98363 * 11 10 9 14 14 C 1.46926 * 120.63276 * 174.77090 * 13 11 10 15 15 C 1.53195 * 108.89465 * 126.29442 * 14 13 11 16 16 C 1.53354 * 109.14900 * 54.57801 * 15 14 13 17 17 C 1.53048 * 109.60504 * 298.71131 * 16 15 14 18 18 H 1.08998 * 109.52042 * 301.40720 * 17 16 15 19 19 N 1.46497 * 109.49448 * 181.32561 * 17 16 15 20 20 C 1.34778 * 126.58795 * 275.16211 * 19 17 16 21 21 C 1.36667 * 106.83862 * 180.02562 * 20 19 17 22 22 C 1.47382 * 125.78293 * 180.02562 * 21 20 19 23 23 O 1.21514 * 120.00057 * 0.02562 * 22 21 20 24 24 O 1.34759 * 119.99999 * 179.97438 * 22 21 20 25 25 N 1.34444 * 108.43587 * 0.02562 * 21 20 19 26 26 N 1.28759 * 109.51170 * 359.70606 * 25 21 20 27 27 C 1.46924 * 120.62813 * 354.73841 * 13 11 10 28 28 H 0.97001 * 119.99558 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47361 * 59.99593 * 9 7 2 30 30 H 1.08997 * 109.47040 * 299.99032 * 9 7 2 31 31 H 0.96996 * 120.00063 * 359.97438 * 10 9 7 32 32 H 1.08999 * 109.58093 * 246.14987 * 14 13 11 33 33 H 1.08998 * 109.58877 * 6.43143 * 14 13 11 34 34 H 1.08997 * 109.49623 * 174.65400 * 15 14 13 35 35 H 1.09002 * 109.49577 * 294.75334 * 15 14 13 36 36 H 1.08999 * 109.41604 * 178.67378 * 16 15 14 37 37 H 1.08994 * 109.42355 * 58.74835 * 16 15 14 38 38 H 1.07999 * 126.58222 * 359.97438 * 20 19 17 39 39 H 0.96695 * 116.99516 * 180.02562 * 24 22 21 40 40 H 1.08997 * 109.58973 * 353.42567 * 27 13 11 41 41 H 1.09005 * 109.58705 * 113.84648 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5623 -5.1068 -0.0918 13 7 2.6254 -5.9063 0.1014 14 6 2.1454 -7.2901 0.2173 15 6 2.8091 -8.1382 -0.8723 16 6 4.3318 -7.9873 -0.7696 17 6 4.7187 -6.5231 -0.9905 18 1 4.3676 -6.1974 -1.9697 19 7 6.1758 -6.3870 -0.9234 20 6 6.9175 -6.2306 0.1910 21 6 8.2213 -6.1454 -0.2099 22 6 9.3857 -5.9698 0.6764 23 8 9.2275 -5.8883 1.8785 24 8 10.6259 -5.9006 0.1538 25 7 8.2617 -6.2490 -1.5497 26 7 7.0670 -6.3992 -2.0057 27 6 4.0737 -5.6589 0.0975 28 1 -0.4849 0.8401 -0.0004 29 1 0.6247 -2.5570 -0.8896 30 1 0.6242 -2.5567 0.8904 31 1 3.1567 -3.4353 0.0002 32 1 2.4065 -7.6863 1.1985 33 1 1.0632 -7.3133 0.0899 34 1 2.5340 -9.1842 -0.7371 35 1 2.4754 -7.7974 -1.8524 36 1 4.8093 -8.6076 -1.5280 37 1 4.6616 -8.3047 0.2196 38 1 6.5517 -6.1811 1.2060 39 1 11.3580 -5.7855 0.7748 40 1 4.2640 -4.6062 -0.1114 41 1 4.4920 -5.9221 1.0690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601068375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:21 Heat of formation + Delta-G solvation = -14.208320 kcal Electronic energy + Delta-G solvation = -27086.216648 eV Core-core repulsion = 23003.832592 eV Total energy + Delta-G solvation = -4082.384056 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.70777 -40.32881 -40.03498 -37.81802 -36.41263 -34.80147 -34.29983 -33.04269 -32.06510 -31.47479 -30.28267 -27.44074 -25.67386 -25.28391 -24.26393 -22.98645 -22.03008 -21.54499 -21.03650 -19.33529 -18.78449 -18.24418 -17.83753 -16.60843 -16.51814 -16.11325 -16.01971 -15.52954 -15.26216 -15.14526 -14.83347 -14.68414 -14.36342 -13.93753 -13.74320 -13.60982 -13.36976 -12.89223 -12.56372 -12.13008 -12.02167 -11.94628 -11.91805 -11.81097 -11.65224 -11.42615 -11.18700 -11.10855 -10.97114 -10.95732 -10.69897 -10.35342 -9.77277 -9.59030 -9.42878 -8.85799 -8.72605 -7.92979 -6.22203 -4.29405 0.66094 1.18798 1.46711 2.58642 2.68054 2.88545 3.20361 3.28142 3.30833 3.54712 3.81731 3.90375 4.00553 4.23848 4.31834 4.37729 4.46744 4.58702 4.64414 4.72880 4.83423 4.98149 5.14373 5.14473 5.21381 5.34241 5.35802 5.45977 5.49177 5.79727 5.85881 5.94100 6.07380 6.42111 6.86422 7.32828 7.39723 7.41999 7.46364 7.67587 7.69564 7.92030 8.60059 8.75294 9.10884 9.38046 10.87916 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009838 B = 0.003524 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.457952 B = 7942.720932 C =10157.757767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.903 3.097 4 H -0.272 1.272 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.544 4.544 8 H 0.062 0.938 9 C 0.265 3.735 10 N -0.727 5.727 11 C 0.699 3.301 12 O -0.587 6.587 13 N -0.633 5.633 14 C 0.124 3.876 15 C -0.130 4.130 16 C -0.127 4.127 17 C 0.133 3.867 18 H 0.125 0.875 19 N -0.346 5.346 20 C 0.107 3.893 21 C -0.095 4.095 22 C 0.579 3.421 23 O -0.512 6.512 24 O -0.497 6.497 25 N -0.183 5.183 26 N -0.053 5.053 27 C 0.105 3.895 28 H 0.266 0.734 29 H 0.027 0.973 30 H 0.026 0.974 31 H 0.384 0.616 32 H 0.065 0.935 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.209 0.791 39 H 0.417 0.583 40 H 0.096 0.904 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.147 -17.439 1.102 23.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.139 4.139 3 Si 0.730 3.270 4 H -0.197 1.197 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.582 4.582 8 H 0.080 0.920 9 C 0.145 3.855 10 N -0.381 5.381 11 C 0.400 3.600 12 O -0.465 6.465 13 N -0.373 5.373 14 C 0.001 3.999 15 C -0.169 4.169 16 C -0.166 4.166 17 C 0.030 3.970 18 H 0.142 0.858 19 N -0.129 5.129 20 C -0.051 4.051 21 C -0.232 4.232 22 C 0.420 3.580 23 O -0.399 6.399 24 O -0.308 6.308 25 N -0.058 5.058 26 N -0.033 5.033 27 C -0.021 4.021 28 H 0.076 0.924 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.219 0.781 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.098 0.902 37 H 0.095 0.905 38 H 0.225 0.775 39 H 0.275 0.725 40 H 0.114 0.886 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.760 -17.534 -0.419 22.292 hybrid contribution 1.256 1.213 1.423 2.253 sum 15.017 -16.320 1.005 22.200 Atomic orbital electron populations 1.69982 1.06086 1.27286 1.48750 1.24928 0.94913 0.99420 0.94606 0.86368 0.79817 0.82934 0.77839 1.19663 1.20717 1.20717 1.21217 0.93218 0.90380 1.53433 0.92011 1.19045 0.87723 0.80981 0.97793 1.45961 1.10895 1.04475 1.76757 1.16024 0.84742 0.80935 0.78279 1.90890 1.14007 1.83559 1.58058 1.47224 1.03460 1.06808 1.79854 1.21489 1.01439 0.79375 0.97636 1.22003 0.92861 1.01179 1.00870 1.22030 0.97915 0.93079 1.03586 1.22256 0.71881 0.98818 1.04024 0.85759 1.50718 1.09148 1.47529 1.05515 1.23345 0.90533 0.96234 0.95006 1.20127 0.91883 1.20398 0.90810 1.19063 0.82025 0.71950 0.84949 1.90957 1.86378 1.47287 1.15317 1.84638 1.16488 1.84453 1.45199 1.74804 1.14260 1.08454 1.08259 1.82156 0.91660 1.21622 1.07880 1.21800 0.82804 1.00188 0.97321 0.92421 0.95485 0.95597 0.78092 0.91646 0.87962 0.89448 0.90572 0.90239 0.90549 0.77451 0.72464 0.88620 0.90340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.58 13.29 55.43 0.74 -24.84 16 2 C 0.07 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 4 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -14.43 9.28 -34.44 -0.32 -14.75 16 8 H 0.06 1.54 7.60 -52.49 -0.40 1.14 16 9 C 0.27 6.83 5.43 -5.19 -0.03 6.80 16 10 N -0.73 -14.64 5.46 -66.42 -0.36 -15.00 16 11 C 0.70 13.18 8.29 -86.92 -0.72 12.46 16 12 O -0.59 -13.54 15.77 5.29 0.08 -13.46 16 13 N -0.63 -8.11 2.97 -178.50 -0.53 -8.64 16 14 C 0.12 1.25 6.43 -3.71 -0.02 1.22 16 15 C -0.13 -0.94 6.11 -26.45 -0.16 -1.10 16 16 C -0.13 -0.85 5.49 -26.52 -0.15 -0.99 16 17 C 0.13 1.11 3.38 -67.81 -0.23 0.88 16 18 H 0.12 1.15 8.14 -51.93 -0.42 0.73 16 19 N -0.35 -3.26 3.54 -54.44 -0.19 -3.45 16 20 C 0.11 0.93 10.39 -16.83 -0.17 0.75 16 21 C -0.10 -1.03 7.02 -83.57 -0.59 -1.62 16 22 C 0.58 5.91 8.33 34.45 0.29 6.20 16 23 O -0.51 -6.03 17.65 -19.28 -0.34 -6.37 16 24 O -0.50 -4.02 13.44 -40.65 -0.55 -4.57 16 25 N -0.18 -2.32 12.39 32.83 0.41 -1.91 16 26 N -0.05 -0.64 13.78 60.35 0.83 0.19 16 27 C 0.11 1.00 5.44 -3.71 -0.02 0.98 16 28 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 29 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.38 6.65 5.81 -40.82 -0.24 6.41 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.10 1.26 6.99 -51.93 -0.36 0.90 16 34 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.21 1.17 7.22 -52.49 -0.38 0.79 16 39 H 0.42 1.18 9.11 45.56 0.42 1.59 16 40 H 0.10 1.00 5.65 -51.93 -0.29 0.70 16 41 H 0.08 0.56 6.97 -51.93 -0.36 0.20 16 LS Contribution 353.00 15.07 5.32 5.32 Total: -1.00 -35.77 353.00 -5.97 -41.74 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -4.13 Total: 2.88 kcal Atomic # 6 Polarization: 14.74 SS G_CDS: -2.22 Total: 12.51 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: 0.89 Total: -53.65 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.80 Total: -24.39 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -35.77 -5.97 -41.74 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.531 kcal (2) G-P(sol) polarization free energy of solvation -35.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds