Wall clock time and date at job start Tue Mar 31 2020 14:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86799 * 119.99811 * 2 1 4 4 H 1.48505 * 109.47139 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.46916 * 299.99604 * 3 2 1 6 6 H 1.48500 * 109.47507 * 59.99763 * 3 2 1 7 7 C 1.37873 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99844 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00003 * 0.02562 * 7 2 1 10 10 N 1.46503 * 109.46785 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99700 * 180.02562 * 10 9 7 12 12 O 1.21582 * 120.00146 * 4.97409 * 11 10 9 13 13 N 1.34777 * 120.00069 * 184.98363 * 11 10 9 14 14 C 1.46926 * 120.63276 * 174.77090 * 13 11 10 15 15 C 1.53195 * 108.89465 * 126.29442 * 14 13 11 16 16 C 1.53354 * 109.14900 * 54.57801 * 15 14 13 17 17 C 1.53048 * 109.60504 * 298.71131 * 16 15 14 18 18 H 1.08998 * 109.52042 * 301.40720 * 17 16 15 19 19 N 1.46497 * 109.49448 * 181.32561 * 17 16 15 20 20 C 1.34778 * 126.58795 * 275.16211 * 19 17 16 21 21 C 1.36667 * 106.83862 * 180.02562 * 20 19 17 22 22 C 1.47382 * 125.78293 * 180.02562 * 21 20 19 23 23 O 1.21514 * 120.00057 * 0.02562 * 22 21 20 24 24 O 1.34759 * 119.99999 * 179.97438 * 22 21 20 25 25 N 1.34444 * 108.43587 * 0.02562 * 21 20 19 26 26 N 1.28759 * 109.51170 * 359.70606 * 25 21 20 27 27 C 1.46924 * 120.62813 * 354.73841 * 13 11 10 28 28 H 0.97001 * 119.99558 * 0.02562 * 1 2 3 29 29 H 1.08993 * 109.47361 * 59.99593 * 9 7 2 30 30 H 1.08997 * 109.47040 * 299.99032 * 9 7 2 31 31 H 0.96996 * 120.00063 * 359.97438 * 10 9 7 32 32 H 1.08999 * 109.58093 * 246.14987 * 14 13 11 33 33 H 1.08998 * 109.58877 * 6.43143 * 14 13 11 34 34 H 1.08997 * 109.49623 * 174.65400 * 15 14 13 35 35 H 1.09002 * 109.49577 * 294.75334 * 15 14 13 36 36 H 1.08999 * 109.41604 * 178.67378 * 16 15 14 37 37 H 1.08994 * 109.42355 * 58.74835 * 16 15 14 38 38 H 1.07999 * 126.58222 * 359.97438 * 20 19 17 39 39 H 0.96695 * 116.99516 * 180.02562 * 24 22 21 40 40 H 1.08997 * 109.58973 * 353.42567 * 27 13 11 41 41 H 1.09005 * 109.58705 * 113.84648 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2031 -3.6126 0.0005 11 6 1.7538 -4.8833 0.0000 12 8 0.5623 -5.1068 -0.0918 13 7 2.6254 -5.9063 0.1014 14 6 2.1454 -7.2901 0.2173 15 6 2.8091 -8.1382 -0.8723 16 6 4.3318 -7.9873 -0.7696 17 6 4.7187 -6.5231 -0.9905 18 1 4.3676 -6.1974 -1.9697 19 7 6.1758 -6.3870 -0.9234 20 6 6.9175 -6.2306 0.1910 21 6 8.2213 -6.1454 -0.2099 22 6 9.3857 -5.9698 0.6764 23 8 9.2275 -5.8883 1.8785 24 8 10.6259 -5.9006 0.1538 25 7 8.2617 -6.2490 -1.5497 26 7 7.0670 -6.3992 -2.0057 27 6 4.0737 -5.6589 0.0975 28 1 -0.4849 0.8401 -0.0004 29 1 0.6247 -2.5570 -0.8896 30 1 0.6242 -2.5567 0.8904 31 1 3.1567 -3.4353 0.0002 32 1 2.4065 -7.6863 1.1985 33 1 1.0632 -7.3133 0.0899 34 1 2.5340 -9.1842 -0.7371 35 1 2.4754 -7.7974 -1.8524 36 1 4.8093 -8.6076 -1.5280 37 1 4.6616 -8.3047 0.2196 38 1 6.5517 -6.1811 1.2060 39 1 11.3580 -5.7855 0.7748 40 1 4.2640 -4.6062 -0.1114 41 1 4.4920 -5.9221 1.0690 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601068375.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:21 Heat of formation + Delta-G solvation = -42.592828 kcal Electronic energy + Delta-G solvation = -27087.447493 eV Core-core repulsion = 23003.832592 eV Total energy + Delta-G solvation = -4083.614901 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.48421 -41.47459 -40.85881 -38.94737 -37.11787 -36.31420 -35.53952 -34.60227 -33.36849 -32.25472 -31.10239 -29.30158 -26.65076 -26.14718 -25.09601 -24.62652 -22.98978 -22.28922 -22.06505 -20.72549 -19.70563 -19.22150 -18.64144 -18.08419 -17.51230 -17.28295 -17.18136 -16.54561 -16.45833 -16.26033 -15.84819 -15.65609 -15.42888 -15.05695 -14.80910 -14.62324 -14.54313 -14.14760 -13.77248 -13.74514 -13.32623 -12.90316 -12.77885 -12.72831 -12.68112 -12.59521 -12.45102 -12.22979 -12.10224 -11.94089 -11.85734 -11.51602 -11.46694 -11.13228 -10.83536 -10.54126 -10.12205 -9.52538 -8.30531 -6.46574 -0.04017 0.36289 0.71834 1.42295 1.42898 1.55505 1.68588 1.91425 1.96077 2.13678 2.36227 3.02151 3.04684 3.06000 3.14757 3.39194 3.67535 3.74130 3.90995 3.94215 4.07359 4.11106 4.22136 4.39863 4.51667 4.65123 4.66863 4.81446 4.92438 4.98074 5.07569 5.19875 5.25942 5.28825 5.43894 5.48430 5.49412 5.64018 5.82313 5.98392 6.64679 6.71409 7.00513 7.08162 7.23677 7.61281 8.81773 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.009838 B = 0.003524 C = 0.002756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2845.457952 B = 7942.720932 C =10157.757767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.981 3.019 4 H -0.256 1.256 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.554 4.554 8 H 0.080 0.920 9 C 0.285 3.715 10 N -0.725 5.725 11 C 0.697 3.303 12 O -0.637 6.637 13 N -0.620 5.620 14 C 0.117 3.883 15 C -0.119 4.119 16 C -0.119 4.119 17 C 0.138 3.862 18 H 0.112 0.888 19 N -0.339 5.339 20 C 0.122 3.878 21 C -0.112 4.112 22 C 0.584 3.416 23 O -0.531 6.531 24 O -0.499 6.499 25 N -0.206 5.206 26 N -0.080 5.080 27 C 0.101 3.899 28 H 0.269 0.731 29 H -0.014 1.014 30 H -0.011 1.011 31 H 0.400 0.600 32 H 0.096 0.904 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.243 0.757 39 H 0.437 0.563 40 H 0.086 0.914 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.701 -18.269 2.114 25.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.804 3.196 4 H -0.180 1.180 5 H -0.205 1.205 6 H -0.203 1.203 7 C -0.592 4.592 8 H 0.098 0.902 9 C 0.162 3.838 10 N -0.380 5.380 11 C 0.398 3.602 12 O -0.519 6.519 13 N -0.358 5.358 14 C -0.005 4.005 15 C -0.158 4.158 16 C -0.157 4.157 17 C 0.036 3.964 18 H 0.130 0.870 19 N -0.122 5.122 20 C -0.036 4.036 21 C -0.250 4.250 22 C 0.427 3.573 23 O -0.420 6.420 24 O -0.313 6.313 25 N -0.080 5.080 26 N -0.060 5.060 27 C -0.024 4.024 28 H 0.078 0.922 29 H 0.004 0.996 30 H 0.007 0.993 31 H 0.238 0.762 32 H 0.114 0.886 33 H 0.092 0.908 34 H 0.134 0.866 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.118 0.882 38 H 0.259 0.741 39 H 0.300 0.700 40 H 0.104 0.896 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 16.415 -18.430 0.580 24.687 hybrid contribution 0.491 1.373 1.116 1.836 sum 16.906 -17.056 1.696 24.075 Atomic orbital electron populations 1.70132 1.08131 1.28502 1.49884 1.25981 0.95731 1.03623 0.93889 0.85171 0.78998 0.77655 0.77761 1.17952 1.20517 1.20282 1.21584 0.94122 0.90588 1.52934 0.90201 1.18420 0.88035 0.83182 0.94161 1.45528 1.10804 1.04099 1.77575 1.16164 0.84799 0.81451 0.77773 1.90855 1.16614 1.84389 1.59999 1.47121 1.04335 1.06393 1.77995 1.21783 1.00261 0.77994 1.00435 1.21932 0.93067 1.01971 0.98821 1.22014 0.97069 0.91491 1.05169 1.22192 0.71290 0.99942 1.02960 0.87017 1.50706 1.09144 1.47016 1.05350 1.23878 0.89693 0.94182 0.95862 1.20445 0.93095 1.21027 0.90417 1.18982 0.82434 0.71431 0.84503 1.90947 1.86744 1.48436 1.15880 1.84602 1.16665 1.83889 1.46105 1.74777 1.14703 1.09110 1.09415 1.82125 0.91976 1.22990 1.08939 1.22044 0.80540 1.00112 0.99696 0.92196 0.99562 0.99263 0.76224 0.88551 0.90753 0.86614 0.92133 0.89665 0.88197 0.74095 0.69995 0.89603 0.86558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.19 13.29 21.45 0.28 -54.91 16 2 C 0.01 0.42 5.46 84.65 0.46 0.89 16 3 Si 0.98 41.99 29.54 68.60 2.03 44.01 16 4 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 5 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 6 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 7 C -0.55 -29.65 9.28 25.60 0.24 -29.42 16 8 H 0.08 3.89 7.60 -2.91 -0.02 3.87 16 9 C 0.29 15.35 5.43 85.63 0.47 15.82 16 10 N -0.72 -29.70 5.46 -482.31 -2.63 -32.33 16 11 C 0.70 26.75 8.29 179.05 1.49 28.23 16 12 O -0.64 -30.77 15.77 -3.98 -0.06 -30.83 16 13 N -0.62 -15.05 2.97 -836.92 -2.49 -17.54 16 14 C 0.12 2.13 6.43 86.36 0.56 2.68 16 15 C -0.12 -1.39 6.11 30.78 0.19 -1.20 16 16 C -0.12 -1.14 5.49 30.73 0.17 -0.97 16 17 C 0.14 1.96 3.38 45.07 0.15 2.11 16 18 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 19 N -0.34 -5.53 3.54 -326.14 -1.16 -6.68 16 20 C 0.12 1.72 10.39 83.87 0.87 2.59 16 21 C -0.11 -2.19 7.02 40.78 0.29 -1.91 16 22 C 0.58 10.78 8.33 70.23 0.59 11.37 16 23 O -0.53 -11.31 17.65 19.79 0.35 -10.96 16 24 O -0.50 -7.18 13.44 -56.69 -0.76 -7.94 16 25 N -0.21 -4.96 12.39 -50.03 -0.62 -5.58 16 26 N -0.08 -1.85 13.78 37.02 0.51 -1.34 16 27 C 0.10 1.63 5.44 86.36 0.47 2.10 16 28 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 29 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 30 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H 0.40 13.62 5.81 -92.71 -0.54 13.08 16 32 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.07 1.83 6.99 -2.39 -0.02 1.81 16 34 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.24 1.55 7.22 -2.91 -0.02 1.53 16 39 H 0.44 1.60 9.11 -74.06 -0.67 0.92 16 40 H 0.09 1.60 5.65 -2.39 -0.01 1.59 16 41 H 0.12 1.10 6.97 -2.38 -0.02 1.08 16 Total: -1.00 -81.94 353.00 1.27 -80.68 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -0.11 Total: 11.13 kcal Atomic # 6 Polarization: 26.36 SS G_CDS: 5.93 Total: 32.29 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -6.10 Total: -118.37 kcal Atomic # 8 Polarization: -49.26 SS G_CDS: -0.48 Total: -49.73 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -81.94 1.27 -80.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601068375.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.084 kcal (2) G-P(sol) polarization free energy of solvation -81.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds