Wall clock time and date at job start Tue Mar 31 2020 15:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00188 * 2 1 4 4 C 1.50698 * 109.47311 * 66.04650 * 3 2 1 5 5 C 1.38107 * 120.03128 * 260.25507 * 4 3 2 6 6 C 1.38390 * 120.05441 * 180.30122 * 5 4 3 7 7 Cl 1.73604 * 119.94167 * 179.72175 * 6 5 4 8 8 C 1.38426 * 120.11234 * 359.69529 * 6 5 4 9 9 C 1.38069 * 120.05626 * 0.02641 * 8 6 5 10 10 C 1.38858 * 120.02564 * 79.99770 * 4 3 2 11 11 O 1.35762 * 120.05713 * 0.02562 * 10 4 3 12 12 C 1.34824 * 117.00207 * 185.31829 * 11 10 4 13 13 H 1.08006 * 119.99916 * 354.94353 * 12 11 10 14 14 C 1.38652 * 120.00207 * 174.93385 * 12 11 10 15 15 N 1.31560 * 119.99581 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 120.00128 * 180.02562 * 14 12 11 17 17 H 1.48497 * 109.47204 * 180.02562 * 16 14 12 18 18 H 1.48506 * 109.47106 * 300.00161 * 16 14 12 19 19 H 1.48501 * 109.47256 * 60.00024 * 16 14 12 20 20 C 1.46901 * 110.99551 * 236.04769 * 2 1 3 21 21 C 1.52997 * 109.46960 * 293.95125 * 20 2 1 22 22 H 1.09004 * 115.55461 * 330.58684 * 21 20 2 23 23 C 1.53005 * 117.49623 * 116.25746 * 21 20 2 24 24 C 1.53010 * 117.50050 * 184.91443 * 21 20 2 25 25 C 1.52998 * 117.49263 * 0.02562 * 24 21 20 26 26 C 1.52995 * 117.49866 * 145.02071 * 24 21 20 27 27 H 1.08999 * 109.47204 * 59.99793 * 1 2 3 28 28 H 1.08997 * 109.47658 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46760 * 299.99853 * 1 2 3 30 30 H 1.08996 * 109.46899 * 306.04557 * 3 2 1 31 31 H 1.08999 * 109.46723 * 186.05186 * 3 2 1 32 32 H 1.08001 * 119.97106 * 359.97438 * 5 4 3 33 33 H 1.08007 * 119.96829 * 180.02562 * 8 6 5 34 34 H 1.08000 * 120.02186 * 179.97438 * 9 8 6 35 35 H 0.97009 * 119.99486 * 179.97438 * 15 14 12 36 36 H 1.08996 * 109.47388 * 53.95297 * 20 2 1 37 37 H 1.08998 * 109.47160 * 173.95721 * 20 2 1 38 38 H 1.09005 * 117.49269 * 214.97728 * 23 21 20 39 39 H 1.08994 * 117.50184 * 359.97438 * 23 21 20 40 40 H 1.08997 * 109.47656 * 60.00177 * 25 24 21 41 41 H 1.09002 * 109.46361 * 180.02562 * 25 24 21 42 42 H 1.08999 * 109.47072 * 299.99523 * 25 24 21 43 43 H 1.09006 * 109.46996 * 60.00189 * 26 24 21 44 44 H 1.08999 * 109.46744 * 180.02562 * 26 24 21 45 45 H 1.09001 * 109.47566 * 300.00245 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 1.2984 5 6 0.5612 2.9114 1.3539 6 6 0.2354 3.5370 2.5445 7 17 -1.1132 4.6283 2.6091 8 6 0.9826 3.2936 3.6841 9 6 2.0556 2.4260 3.6352 10 6 2.3849 1.7973 2.4414 11 8 3.4401 0.9445 2.3906 12 6 4.0548 0.6612 3.5566 13 1 3.7558 1.1686 4.4620 14 6 5.0708 -0.2816 3.5936 15 7 5.4352 -0.8994 2.4907 16 14 5.9220 -0.6746 5.2092 17 1 6.9643 -1.7075 4.9812 18 1 6.5550 0.5562 5.7475 19 1 4.9239 -1.1845 6.1834 20 6 1.9953 -0.7660 -1.1377 21 6 1.6313 -2.2426 -0.9704 22 1 1.5339 -2.5892 0.0585 23 6 0.7034 -2.8643 -2.0161 24 6 2.1901 -3.2288 -1.9981 25 6 3.0705 -2.6629 -3.1141 26 6 2.5688 -4.6261 -1.5031 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.5612 1.9273 -0.8309 31 1 3.0797 1.3443 -0.1083 32 1 -0.0231 3.1032 0.4660 33 1 0.7260 3.7828 4.6122 34 1 2.6384 2.2369 4.5245 35 1 6.1463 -1.5587 2.5165 36 1 1.5610 -0.3873 -2.0628 37 1 3.0796 -0.6612 -1.1757 38 1 -0.0041 -3.6201 -1.6752 39 1 0.3520 -2.2212 -2.8229 40 1 3.9429 -2.1768 -2.6775 41 1 3.3944 -3.4731 -3.7674 42 1 2.5009 -1.9357 -3.6928 43 1 1.6887 -5.1142 -1.0844 44 1 2.9498 -5.2159 -2.3368 45 1 3.3382 -4.5435 -0.7354 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654354310.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:30 Heat of formation + Delta-G solvation = 11.642157 kcal Electronic energy + Delta-G solvation = -25422.289950 eV Core-core repulsion = 21852.983612 eV Total energy + Delta-G solvation = -3569.306338 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.44120 -38.71240 -36.85245 -36.25825 -35.30590 -32.32940 -31.24231 -29.29479 -28.78925 -27.71669 -26.84171 -26.07171 -25.36617 -22.56080 -21.69621 -20.65268 -20.19833 -18.43686 -18.04778 -16.91660 -15.59773 -15.46006 -15.20752 -14.85142 -14.50484 -14.35302 -13.91918 -13.77360 -13.66206 -13.35715 -13.25173 -12.91855 -12.50230 -12.33271 -12.28717 -12.18632 -11.89030 -11.80931 -11.74831 -11.52170 -11.22613 -11.18950 -11.10329 -10.95517 -10.82922 -10.72238 -10.50804 -10.36211 -10.28511 -9.56782 -9.41341 -9.27395 -8.83008 -8.28025 -7.73040 -7.18934 -6.48424 -4.05213 1.98361 2.13491 2.84705 3.11217 3.12550 3.14671 3.87195 3.93116 4.22516 4.58608 4.87960 4.93560 5.03645 5.10052 5.20044 5.23109 5.39075 5.54531 5.59230 5.66514 5.67549 5.75149 5.75639 5.82006 5.88539 5.97520 5.99605 6.00553 6.03910 6.09877 6.15655 6.23771 6.27707 6.34994 6.39338 6.42107 6.45556 6.61540 6.68501 6.90743 6.94661 7.16299 7.28501 7.58772 7.62321 7.64844 7.93999 8.96005 9.64347 10.67452 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.007568 B = 0.005173 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3699.079563 B = 5410.995286 C = 8633.499455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.521 5.521 3 C 0.120 3.880 4 C -0.147 4.147 5 C -0.057 4.057 6 C -0.129 4.129 7 Cl -0.110 7.110 8 C -0.058 4.058 9 C -0.229 4.229 10 C 0.176 3.824 11 O -0.149 6.149 12 C -0.394 4.394 13 H 0.090 0.910 14 C 0.046 3.954 15 N -0.848 5.848 16 Si 0.937 3.063 17 H -0.278 1.278 18 H -0.270 1.270 19 H -0.270 1.270 20 C 0.094 3.906 21 C -0.124 4.124 22 H 0.113 0.887 23 C -0.181 4.181 24 C -0.127 4.127 25 C -0.114 4.114 26 C -0.113 4.113 27 H 0.014 0.986 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.027 0.973 31 H 0.085 0.915 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.135 0.865 35 H 0.270 0.730 36 H 0.024 0.976 37 H 0.081 0.919 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.063 0.937 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.902 -0.758 -6.711 9.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.244 5.244 3 C -0.007 4.007 4 C -0.149 4.149 5 C -0.077 4.077 6 C -0.156 4.156 7 Cl -0.082 7.082 8 C -0.077 4.077 9 C -0.249 4.249 10 C 0.119 3.881 11 O -0.050 6.050 12 C -0.470 4.470 13 H 0.108 0.892 14 C -0.160 4.160 15 N -0.481 5.481 16 Si 0.761 3.239 17 H -0.203 1.203 18 H -0.195 1.195 19 H -0.195 1.195 20 C -0.034 4.034 21 C -0.143 4.143 22 H 0.131 0.869 23 C -0.218 4.218 24 C -0.127 4.127 25 C -0.171 4.171 26 C -0.171 4.171 27 H 0.032 0.968 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.104 0.896 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.152 0.848 35 H 0.080 0.920 36 H 0.042 0.958 37 H 0.099 0.901 38 H 0.106 0.894 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.074 0.926 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.532 -1.224 -6.554 9.334 hybrid contribution -0.122 0.338 0.293 0.463 sum -6.654 -0.887 -6.261 9.179 Atomic orbital electron populations 1.22357 0.88218 1.01354 1.00027 1.61819 1.06928 1.13323 1.42305 1.20649 1.00634 0.86901 0.92523 1.18628 0.98194 1.03366 0.94707 1.20375 0.95781 0.95674 0.95851 1.20208 0.95741 1.03442 0.96255 1.98272 1.46755 1.64344 1.98839 1.20610 0.94064 0.96824 0.96239 1.21096 1.01336 1.03067 0.99396 1.19098 0.87301 0.89402 0.92267 1.84015 1.35332 1.52423 1.33226 1.21284 1.16747 1.23269 0.85661 0.89229 1.25238 0.96657 0.95232 0.98898 1.70042 1.27472 1.23819 1.26765 0.85848 0.78994 0.78669 0.80360 1.20275 1.19520 1.19480 1.21568 1.00375 0.90933 0.90504 1.22423 1.02244 0.93576 0.96011 0.86922 1.23338 0.92469 1.03721 1.02256 1.21553 0.94920 0.96404 0.99867 1.21320 0.99230 1.00226 0.96336 1.21332 1.01428 0.93478 1.00818 0.96784 0.91842 0.91363 0.95450 0.89636 0.86529 0.86619 0.84783 0.91991 0.95770 0.90108 0.89362 0.89461 0.91799 0.92605 0.92813 0.92784 0.92603 0.91817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.45 9.10 60.06 0.55 1.00 16 2 N -0.52 -9.40 4.75 -244.38 -1.16 -10.56 16 3 C 0.12 2.21 4.76 -4.98 -0.02 2.19 16 4 C -0.15 -2.92 4.60 -104.44 -0.48 -3.40 16 5 C -0.06 -1.02 8.49 -39.57 -0.34 -1.35 16 6 C -0.13 -2.29 6.32 -39.46 -0.25 -2.54 16 7 Cl -0.11 -1.71 28.95 -51.86 -1.50 -3.21 16 8 C -0.06 -1.07 9.82 -39.57 -0.39 -1.46 16 9 C -0.23 -4.78 9.17 -39.40 -0.36 -5.14 16 10 C 0.18 4.00 6.62 -39.11 -0.26 3.74 16 11 O -0.15 -3.95 8.99 0.03 0.00 -3.95 16 12 C -0.39 -10.41 9.49 30.89 0.29 -10.12 16 13 H 0.09 2.21 5.20 -52.48 -0.27 1.93 16 14 C 0.05 1.20 5.49 -17.52 -0.10 1.10 16 15 N -0.85 -23.50 13.67 55.48 0.76 -22.74 16 16 Si 0.94 19.81 29.55 -169.99 -5.02 14.79 16 17 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 18 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 C 0.09 1.51 4.32 -3.82 -0.02 1.49 16 21 C -0.12 -1.86 4.46 -90.61 -0.40 -2.26 16 22 H 0.11 1.94 8.14 -51.93 -0.42 1.52 16 23 C -0.18 -2.23 9.47 -26.69 -0.25 -2.48 16 24 C -0.13 -1.64 2.70 -154.47 -0.42 -2.06 16 25 C -0.11 -1.35 8.86 37.16 0.33 -1.02 16 26 C -0.11 -1.37 9.85 37.16 0.37 -1.01 16 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.95 7.17 -51.93 -0.37 0.57 16 29 H 0.07 1.15 6.64 -51.93 -0.34 0.81 16 30 H 0.03 0.45 7.99 -51.93 -0.41 0.03 16 31 H 0.09 1.74 7.65 -51.93 -0.40 1.35 16 32 H 0.12 1.83 8.04 -52.49 -0.42 1.41 16 33 H 0.12 1.85 8.06 -52.48 -0.42 1.43 16 34 H 0.13 2.77 5.64 -52.49 -0.30 2.48 16 35 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.02 0.35 7.85 -51.93 -0.41 -0.05 16 37 H 0.08 1.42 7.56 -51.93 -0.39 1.03 16 38 H 0.09 1.01 8.05 -51.93 -0.42 0.60 16 39 H 0.09 1.02 7.94 -51.93 -0.41 0.60 16 40 H 0.06 0.82 7.84 -51.93 -0.41 0.41 16 41 H 0.05 0.58 7.92 -51.93 -0.41 0.17 16 42 H 0.05 0.60 7.90 -51.93 -0.41 0.19 16 43 H 0.05 0.61 7.90 -51.93 -0.41 0.20 16 44 H 0.05 0.59 7.92 -51.93 -0.41 0.18 16 45 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -27.32 380.76 -9.97 -37.29 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -7.03 Total: 5.95 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -1.75 Total: -23.31 kcal Atomic # 7 Polarization: -32.90 SS G_CDS: -0.40 Total: -33.30 kcal Atomic # 8 Polarization: -3.95 SS G_CDS: 0.00 Total: -3.95 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.02 Total: 14.79 kcal Atomic # 17 Polarization: -1.71 SS G_CDS: -1.50 Total: -3.21 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -27.32 -9.97 -37.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654354310.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.929 kcal (2) G-P(sol) polarization free energy of solvation -27.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds