Wall clock time and date at job start Tue Mar 31 2020 15:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00412 * 2 1 4 4 C 1.50701 * 109.46730 * 293.95720 * 3 2 1 5 5 C 1.38115 * 120.02729 * 260.24626 * 4 3 2 6 6 C 1.38390 * 120.05830 * 180.30214 * 5 4 3 7 7 Cl 1.73599 * 119.94538 * 179.72653 * 6 5 4 8 8 C 1.38424 * 120.10951 * 359.70075 * 6 5 4 9 9 C 1.38077 * 120.05999 * 0.02563 * 8 6 5 10 10 C 1.38859 * 120.03185 * 79.99782 * 4 3 2 11 11 O 1.35756 * 120.05390 * 359.97438 * 10 4 3 12 12 C 1.34823 * 116.99994 * 185.30477 * 11 10 4 13 13 H 1.08002 * 120.00150 * 355.10279 * 12 11 10 14 14 C 1.38656 * 120.00054 * 175.09422 * 12 11 10 15 15 N 1.31558 * 119.99705 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99993 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47194 * 270.00140 * 16 14 12 18 18 H 1.48496 * 109.46724 * 30.00134 * 16 14 12 19 19 H 1.48502 * 109.46810 * 149.99986 * 16 14 12 20 20 C 1.46902 * 110.99712 * 123.95360 * 2 1 3 21 21 C 1.53000 * 109.47111 * 66.04610 * 20 2 1 22 22 H 1.08992 * 115.55395 * 29.27785 * 21 20 2 23 23 C 1.53000 * 117.49923 * 243.60251 * 21 20 2 24 24 C 1.52999 * 60.00406 * 252.51195 * 23 21 20 25 25 C 1.52998 * 117.49748 * 252.51278 * 24 23 21 26 26 C 1.53000 * 117.49928 * 107.48717 * 24 23 21 27 27 H 1.08997 * 109.47048 * 60.00219 * 1 2 3 28 28 H 1.08998 * 109.47348 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47238 * 300.00112 * 1 2 3 30 30 H 1.08998 * 109.47205 * 173.95360 * 3 2 1 31 31 H 1.09004 * 109.46690 * 53.95091 * 3 2 1 32 32 H 1.08005 * 119.96876 * 0.05230 * 5 4 3 33 33 H 1.07998 * 119.97419 * 180.02562 * 8 6 5 34 34 H 1.07999 * 120.03145 * 179.97438 * 9 8 6 35 35 H 0.97001 * 119.99833 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.46894 * 186.04139 * 20 2 1 37 37 H 1.09002 * 109.47397 * 306.04308 * 20 2 1 38 38 H 1.09004 * 117.49292 * 0.02562 * 23 21 20 39 39 H 1.08999 * 117.49935 * 144.99569 * 23 21 20 40 40 H 1.08998 * 109.47147 * 128.62469 * 25 24 23 41 41 H 1.09005 * 109.46304 * 248.61903 * 25 24 23 42 42 H 1.08998 * 109.47153 * 8.61861 * 25 24 23 43 43 H 1.09005 * 109.46906 * 351.37949 * 26 24 23 44 44 H 1.08997 * 109.46863 * 111.37898 * 26 24 23 45 45 H 1.08994 * 109.47354 * 231.38338 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 2.5719 2.1394 -2.3108 6 6 2.2453 2.7652 -3.5011 7 17 3.4251 2.8859 -4.7689 8 6 0.9793 3.2947 -3.6826 9 6 0.0391 3.2001 -2.6759 10 6 0.3646 2.5728 -1.4801 11 8 -0.5580 2.4784 -0.4887 12 6 -1.8041 2.9099 -0.7691 13 1 -2.0117 3.3806 -1.7187 14 6 -2.8193 2.7492 0.1616 15 7 -4.0353 3.1698 -0.1122 16 14 -2.4601 1.9355 1.8044 17 1 -2.6729 0.4705 1.6881 18 1 -1.0514 2.2020 2.1912 19 1 -3.3706 2.4874 2.8396 20 6 1.9954 -0.7660 1.1376 21 6 1.6313 -2.2426 0.9704 22 1 1.5316 -2.5887 -0.0583 23 6 0.7062 -2.8652 2.0179 24 6 2.1921 -3.2291 1.9968 25 6 2.5702 -4.6261 1.5005 26 6 3.0739 -2.6634 3.1118 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.0798 1.3443 0.1082 31 1 1.5611 1.9273 0.8309 32 1 3.5601 1.7263 -2.1718 33 1 0.7266 3.7823 -4.6126 34 1 -0.9484 3.6137 -2.8178 35 1 -4.7456 3.0571 0.5387 36 1 3.0797 -0.6612 1.1756 37 1 1.5610 -0.3872 2.0629 38 1 0.3565 -2.2226 2.8260 39 1 -0.0023 -3.6207 1.6783 40 1 3.3382 -4.5430 0.7316 41 1 2.9524 -5.2163 2.3335 42 1 1.6895 -5.1142 1.0832 43 1 2.5048 -1.9367 3.6917 44 1 3.3995 -3.4738 3.7639 45 1 3.9454 -2.1766 2.6742 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001654354311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:33 Heat of formation + Delta-G solvation = 15.879087 kcal Electronic energy + Delta-G solvation = -25653.245580 eV Core-core repulsion = 22084.122969 eV Total energy + Delta-G solvation = -3569.122611 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.82473 -38.89068 -37.03084 -36.34307 -35.50379 -32.53388 -31.41121 -29.53761 -29.00820 -27.89903 -26.92340 -26.28883 -25.32754 -22.84053 -21.54428 -20.83605 -20.30577 -18.66236 -18.05384 -17.32970 -15.85404 -15.56265 -15.41408 -15.14777 -14.72826 -14.28726 -14.01470 -13.93185 -13.86114 -13.61027 -13.34174 -12.74338 -12.70588 -12.57625 -12.50068 -12.44554 -12.10103 -12.06948 -11.90523 -11.51656 -11.43170 -11.30898 -11.10282 -10.95960 -10.86315 -10.78504 -10.51715 -10.33401 -10.21491 -9.74409 -9.57803 -9.48158 -8.96573 -8.40931 -7.90786 -7.39930 -6.55867 -4.21699 1.85501 1.96085 2.73521 3.09430 3.13850 3.23932 3.66800 4.07856 4.08521 4.43353 4.65221 4.70154 4.74226 4.91961 4.96884 5.03045 5.25840 5.39487 5.42911 5.50136 5.53134 5.61884 5.68331 5.71636 5.77031 5.80710 5.83150 5.85068 5.90726 5.96057 6.02031 6.07268 6.17237 6.23536 6.28309 6.29430 6.38148 6.54620 6.77417 6.81136 6.86321 7.03557 7.34275 7.42599 7.47639 7.63443 7.87436 8.78897 9.36961 10.51539 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008064 B = 0.005299 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3471.471741 B = 5282.725444 C = 8280.479994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.532 5.532 3 C 0.112 3.888 4 C -0.141 4.141 5 C -0.048 4.048 6 C -0.115 4.115 7 Cl -0.104 7.104 8 C -0.062 4.062 9 C -0.211 4.211 10 C 0.168 3.832 11 O -0.203 6.203 12 C -0.391 4.391 13 H 0.108 0.892 14 C 0.070 3.930 15 N -0.872 5.872 16 Si 0.898 3.102 17 H -0.269 1.269 18 H -0.261 1.261 19 H -0.285 1.285 20 C 0.085 3.915 21 C -0.130 4.130 22 H 0.112 0.888 23 C -0.176 4.176 24 C -0.130 4.130 25 C -0.112 4.112 26 C -0.114 4.114 27 H 0.088 0.912 28 H 0.055 0.945 29 H 0.028 0.972 30 H 0.073 0.927 31 H 0.044 0.956 32 H 0.124 0.876 33 H 0.120 0.880 34 H 0.142 0.858 35 H 0.281 0.719 36 H 0.074 0.926 37 H 0.031 0.969 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.059 0.941 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.241 -8.726 2.159 15.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.256 5.256 3 C -0.015 4.015 4 C -0.143 4.143 5 C -0.068 4.068 6 C -0.142 4.142 7 Cl -0.075 7.075 8 C -0.081 4.081 9 C -0.231 4.231 10 C 0.114 3.886 11 O -0.107 6.107 12 C -0.467 4.467 13 H 0.126 0.874 14 C -0.134 4.134 15 N -0.509 5.509 16 Si 0.724 3.276 17 H -0.194 1.194 18 H -0.185 1.185 19 H -0.211 1.211 20 C -0.043 4.043 21 C -0.148 4.148 22 H 0.130 0.870 23 C -0.213 4.213 24 C -0.131 4.131 25 C -0.169 4.169 26 C -0.171 4.171 27 H 0.107 0.893 28 H 0.074 0.926 29 H 0.047 0.953 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.142 0.858 33 H 0.138 0.862 34 H 0.159 0.841 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.049 0.951 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.078 0.922 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.252 -8.997 1.957 15.326 hybrid contribution -0.469 0.210 1.175 1.283 sum 11.783 -8.787 3.133 15.029 Atomic orbital electron populations 1.22705 0.86056 1.00713 1.02951 1.62134 1.09082 1.12943 1.41473 1.20709 0.98886 0.87789 0.94135 1.18675 0.92330 1.05920 0.97329 1.20370 0.98746 0.97028 0.90642 1.20359 0.91355 1.11261 0.91266 1.98287 1.58922 1.97622 1.52697 1.20691 0.91106 0.97646 0.98697 1.21204 1.01278 1.06560 0.94040 1.18895 0.89069 0.92814 0.87785 1.83713 1.19535 1.72708 1.34783 1.20772 0.81197 1.39250 1.05451 0.87427 1.24411 0.93747 0.96342 0.98914 1.69627 1.00494 1.44315 1.36454 0.86398 0.78963 0.79952 0.82276 1.19448 1.18512 1.21103 1.21639 0.99469 0.91240 0.91939 1.22428 1.03068 0.93367 0.95971 0.87015 1.23337 0.92267 1.03625 1.02101 1.21593 0.95484 0.96203 0.99816 1.21325 1.01325 0.93571 1.00709 1.21323 0.98948 1.00409 0.96448 0.89315 0.92631 0.95328 0.90815 0.93804 0.85819 0.86195 0.84071 0.90871 0.90816 0.95124 0.89167 0.89027 0.92235 0.92436 0.92580 0.92556 0.92441 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 7.83 60.06 0.47 0.91 16 2 N -0.53 -8.93 4.75 -244.37 -1.16 -10.09 16 3 C 0.11 1.89 4.99 -4.98 -0.02 1.87 16 4 C -0.14 -2.60 5.17 -104.44 -0.54 -3.14 16 5 C -0.05 -0.81 9.45 -39.57 -0.37 -1.19 16 6 C -0.12 -1.95 6.32 -39.46 -0.25 -2.20 16 7 Cl -0.10 -1.54 28.95 -51.86 -1.50 -3.04 16 8 C -0.06 -1.10 9.82 -39.57 -0.39 -1.49 16 9 C -0.21 -4.25 9.17 -39.40 -0.36 -4.61 16 10 C 0.17 3.54 5.37 -39.11 -0.21 3.33 16 11 O -0.20 -4.78 4.72 0.05 0.00 -4.78 16 12 C -0.39 -10.14 9.95 30.89 0.31 -9.84 16 13 H 0.11 2.88 5.44 -52.49 -0.29 2.59 16 14 C 0.07 1.85 5.49 -17.51 -0.10 1.76 16 15 N -0.87 -24.00 13.96 55.48 0.77 -23.22 16 16 Si 0.90 20.64 26.04 -169.99 -4.43 16.21 16 17 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 18 H -0.26 -5.98 7.01 56.52 0.40 -5.58 16 19 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.09 1.20 4.32 -3.82 -0.02 1.18 16 21 C -0.13 -1.67 4.46 -90.61 -0.40 -2.07 16 22 H 0.11 1.53 8.14 -51.93 -0.42 1.11 16 23 C -0.18 -2.14 9.47 -26.73 -0.25 -2.39 16 24 C -0.13 -1.40 2.70 -154.50 -0.42 -1.82 16 25 C -0.11 -1.04 9.85 37.16 0.37 -0.67 16 26 C -0.11 -1.10 8.86 37.16 0.33 -0.77 16 27 H 0.09 1.91 4.99 -51.93 -0.26 1.65 16 28 H 0.05 0.99 7.16 -51.93 -0.37 0.62 16 29 H 0.03 0.59 4.70 -51.92 -0.24 0.34 16 30 H 0.07 1.05 7.80 -51.93 -0.40 0.65 16 31 H 0.04 0.81 7.84 -51.93 -0.41 0.41 16 32 H 0.12 1.82 8.04 -52.48 -0.42 1.39 16 33 H 0.12 1.86 8.06 -52.49 -0.42 1.44 16 34 H 0.14 2.96 5.64 -52.49 -0.30 2.66 16 35 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 36 H 0.07 0.93 7.56 -51.93 -0.39 0.54 16 37 H 0.03 0.45 7.85 -51.93 -0.41 0.05 16 38 H 0.09 1.14 7.94 -51.93 -0.41 0.73 16 39 H 0.09 1.05 8.05 -51.93 -0.42 0.64 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.47 7.92 -51.93 -0.41 0.05 16 42 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 43 H 0.06 0.56 7.90 -51.93 -0.41 0.15 16 44 H 0.06 0.48 7.92 -51.93 -0.41 0.07 16 45 H 0.06 0.55 7.83 -51.93 -0.41 0.15 16 LS Contribution 367.99 15.07 5.55 5.55 Total: -1.00 -26.08 367.99 -9.41 -35.49 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.78 Total: 5.03 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: -1.86 Total: -21.14 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: -0.39 Total: -33.32 kcal Atomic # 8 Polarization: -4.78 SS G_CDS: 0.00 Total: -4.78 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -4.43 Total: 16.21 kcal Atomic # 17 Polarization: -1.54 SS G_CDS: -1.50 Total: -3.04 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -26.08 -9.41 -35.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654354311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.369 kcal (2) G-P(sol) polarization free energy of solvation -26.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds