Wall clock time and date at job start Tue Mar 31 2020 15:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46899 * 111.00412 * 2 1 4 4 C 1.50701 * 109.46730 * 293.95720 * 3 2 1 5 5 C 1.38115 * 120.02729 * 260.24626 * 4 3 2 6 6 C 1.38390 * 120.05830 * 180.30214 * 5 4 3 7 7 Cl 1.73599 * 119.94538 * 179.72653 * 6 5 4 8 8 C 1.38424 * 120.10951 * 359.70075 * 6 5 4 9 9 C 1.38077 * 120.05999 * 0.02563 * 8 6 5 10 10 C 1.38859 * 120.03185 * 79.99782 * 4 3 2 11 11 O 1.35756 * 120.05390 * 359.97438 * 10 4 3 12 12 C 1.34823 * 116.99994 * 185.30477 * 11 10 4 13 13 H 1.08002 * 120.00150 * 355.10279 * 12 11 10 14 14 C 1.38656 * 120.00054 * 175.09422 * 12 11 10 15 15 N 1.31558 * 119.99705 * 180.02562 * 14 12 11 16 16 Si 1.86803 * 119.99993 * 0.02562 * 14 12 11 17 17 H 1.48494 * 109.47194 * 270.00140 * 16 14 12 18 18 H 1.48496 * 109.46724 * 30.00134 * 16 14 12 19 19 H 1.48502 * 109.46810 * 149.99986 * 16 14 12 20 20 C 1.46902 * 110.99712 * 123.95360 * 2 1 3 21 21 C 1.53000 * 109.47111 * 66.04610 * 20 2 1 22 22 H 1.08992 * 115.55395 * 29.27785 * 21 20 2 23 23 C 1.53000 * 117.49923 * 243.60251 * 21 20 2 24 24 C 1.52999 * 60.00406 * 252.51195 * 23 21 20 25 25 C 1.52998 * 117.49748 * 252.51278 * 24 23 21 26 26 C 1.53000 * 117.49928 * 107.48717 * 24 23 21 27 27 H 1.08997 * 109.47048 * 60.00219 * 1 2 3 28 28 H 1.08998 * 109.47348 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47238 * 300.00112 * 1 2 3 30 30 H 1.08998 * 109.47205 * 173.95360 * 3 2 1 31 31 H 1.09004 * 109.46690 * 53.95091 * 3 2 1 32 32 H 1.08005 * 119.96876 * 0.05230 * 5 4 3 33 33 H 1.07998 * 119.97419 * 180.02562 * 8 6 5 34 34 H 1.07999 * 120.03145 * 179.97438 * 9 8 6 35 35 H 0.97001 * 119.99833 * 179.97438 * 15 14 12 36 36 H 1.09006 * 109.46894 * 186.04139 * 20 2 1 37 37 H 1.09002 * 109.47397 * 306.04308 * 20 2 1 38 38 H 1.09004 * 117.49292 * 0.02562 * 23 21 20 39 39 H 1.08999 * 117.49935 * 144.99569 * 23 21 20 40 40 H 1.08998 * 109.47147 * 128.62469 * 25 24 23 41 41 H 1.09005 * 109.46304 * 248.61903 * 25 24 23 42 42 H 1.08998 * 109.47153 * 8.61861 * 25 24 23 43 43 H 1.09005 * 109.46906 * 351.37949 * 26 24 23 44 44 H 1.08997 * 109.46863 * 111.37898 * 26 24 23 45 45 H 1.08994 * 109.47354 * 231.38338 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 6 2.5719 2.1394 -2.3108 6 6 2.2453 2.7652 -3.5011 7 17 3.4251 2.8859 -4.7689 8 6 0.9793 3.2947 -3.6826 9 6 0.0391 3.2001 -2.6759 10 6 0.3646 2.5728 -1.4801 11 8 -0.5580 2.4784 -0.4887 12 6 -1.8041 2.9099 -0.7691 13 1 -2.0117 3.3806 -1.7187 14 6 -2.8193 2.7492 0.1616 15 7 -4.0353 3.1698 -0.1122 16 14 -2.4601 1.9355 1.8044 17 1 -2.6729 0.4705 1.6881 18 1 -1.0514 2.2020 2.1912 19 1 -3.3706 2.4874 2.8396 20 6 1.9954 -0.7660 1.1376 21 6 1.6313 -2.2426 0.9704 22 1 1.5316 -2.5887 -0.0583 23 6 0.7062 -2.8652 2.0179 24 6 2.1921 -3.2291 1.9968 25 6 2.5702 -4.6261 1.5005 26 6 3.0739 -2.6634 3.1118 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 3.0798 1.3443 0.1082 31 1 1.5611 1.9273 0.8309 32 1 3.5601 1.7263 -2.1718 33 1 0.7266 3.7823 -4.6126 34 1 -0.9484 3.6137 -2.8178 35 1 -4.7456 3.0571 0.5387 36 1 3.0797 -0.6612 1.1756 37 1 1.5610 -0.3872 2.0629 38 1 0.3565 -2.2226 2.8260 39 1 -0.0023 -3.6207 1.6783 40 1 3.3382 -4.5430 0.7316 41 1 2.9524 -5.2163 2.3335 42 1 1.6895 -5.1142 1.0832 43 1 2.5048 -1.9367 3.6917 44 1 3.3995 -3.4738 3.7639 45 1 3.9454 -2.1766 2.6742 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001654354311.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:00:32 Heat of formation + Delta-G solvation = 3.245112 kcal Electronic energy + Delta-G solvation = -25653.793430 eV Core-core repulsion = 22084.122969 eV Total energy + Delta-G solvation = -3569.670461 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.37396 -39.91851 -38.60174 -37.62590 -36.87159 -34.47270 -32.81422 -30.77033 -30.26322 -28.80557 -28.20424 -27.57541 -27.09495 -24.19336 -23.12922 -22.03274 -21.60209 -19.91459 -19.55311 -18.97306 -17.17387 -17.04132 -16.93836 -16.44903 -16.19964 -15.62623 -15.48443 -15.32691 -15.02063 -14.79357 -14.47344 -14.40431 -14.17866 -14.00792 -13.81705 -13.58408 -13.26916 -13.03862 -12.95633 -12.88699 -12.83643 -12.76124 -12.38257 -12.26261 -12.23225 -12.03953 -11.91065 -11.87094 -11.75655 -11.28762 -10.88029 -10.68309 -10.42891 -9.86975 -9.30747 -8.97052 -8.53362 -6.22453 0.36397 0.44532 1.24765 1.26624 1.33665 1.40715 2.19055 2.56261 2.76286 2.93244 3.01547 3.22312 3.75816 3.80789 3.87627 3.93552 3.99820 4.20809 4.25705 4.28694 4.34641 4.48142 4.51284 4.57964 4.63800 4.71538 4.79486 4.82253 4.84417 4.88266 4.93204 5.06062 5.06765 5.07926 5.12363 5.21482 5.24930 5.29335 5.31905 5.35818 5.48247 5.50747 5.70291 5.73285 6.01663 6.06708 6.19841 6.82431 7.52896 8.58268 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.008064 B = 0.005299 C = 0.003381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3471.471741 B = 5282.725444 C = 8280.479994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.531 5.531 3 C 0.112 3.888 4 C -0.137 4.137 5 C -0.043 4.043 6 C -0.104 4.104 7 Cl -0.074 7.074 8 C -0.063 4.063 9 C -0.225 4.225 10 C 0.141 3.859 11 O -0.220 6.220 12 C -0.390 4.390 13 H 0.086 0.914 14 C 0.024 3.976 15 N -0.918 5.918 16 Si 0.951 3.049 17 H -0.263 1.263 18 H -0.263 1.263 19 H -0.279 1.279 20 C 0.088 3.912 21 C -0.143 4.143 22 H 0.103 0.897 23 C -0.188 4.188 24 C -0.111 4.111 25 C -0.112 4.112 26 C -0.116 4.116 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.010 0.990 30 H 0.110 0.890 31 H 0.024 0.976 32 H 0.157 0.843 33 H 0.142 0.858 34 H 0.122 0.878 35 H 0.283 0.717 36 H 0.095 0.905 37 H 0.022 0.978 38 H 0.082 0.918 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.072 0.928 42 H 0.054 0.946 43 H 0.049 0.951 44 H 0.072 0.928 45 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.873 -10.294 2.176 19.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.255 5.255 3 C -0.015 4.015 4 C -0.139 4.139 5 C -0.062 4.062 6 C -0.131 4.131 7 Cl -0.045 7.045 8 C -0.082 4.082 9 C -0.245 4.245 10 C 0.090 3.910 11 O -0.126 6.126 12 C -0.466 4.466 13 H 0.103 0.897 14 C -0.176 4.176 15 N -0.558 5.558 16 Si 0.775 3.225 17 H -0.188 1.188 18 H -0.188 1.188 19 H -0.205 1.205 20 C -0.039 4.039 21 C -0.162 4.162 22 H 0.121 0.879 23 C -0.225 4.225 24 C -0.111 4.111 25 C -0.169 4.169 26 C -0.173 4.173 27 H 0.079 0.921 28 H 0.081 0.919 29 H 0.028 0.972 30 H 0.128 0.872 31 H 0.042 0.958 32 H 0.174 0.826 33 H 0.159 0.841 34 H 0.140 0.860 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.040 0.960 38 H 0.100 0.900 39 H 0.112 0.888 40 H 0.083 0.917 41 H 0.091 0.909 42 H 0.073 0.927 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.932 -10.571 1.949 19.219 hybrid contribution -1.306 0.703 0.911 1.740 sum 14.626 -9.868 2.860 17.874 Atomic orbital electron populations 1.22475 0.87853 1.00332 1.00686 1.62147 1.07407 1.12970 1.42926 1.20793 1.00786 0.87485 0.92466 1.18990 0.91351 1.04958 0.98568 1.20718 0.99604 0.96106 0.89770 1.20554 0.91466 1.09080 0.91952 1.98308 1.57497 1.97420 1.51313 1.20884 0.91037 0.97495 0.98766 1.21209 1.01288 1.07096 0.94864 1.19363 0.89810 0.93827 0.87974 1.83699 1.18772 1.74411 1.35723 1.20669 0.82625 1.38726 1.04626 0.89696 1.25018 0.93591 0.97198 1.01748 1.69706 1.01383 1.46964 1.37772 0.85597 0.78474 0.79407 0.79013 1.18753 1.18775 1.20481 1.21701 1.00424 0.91438 0.90368 1.22343 1.04776 0.93080 0.95971 0.87914 1.23373 0.93538 1.03809 1.01747 1.21723 0.94383 0.96310 0.98721 1.21361 1.01509 0.92646 1.01433 1.21372 0.98809 1.00887 0.96222 0.92054 0.91918 0.97171 0.87216 0.95780 0.82555 0.84052 0.86002 0.90691 0.88688 0.95984 0.89993 0.88785 0.91697 0.90926 0.92709 0.93226 0.90875 0.91399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.34 7.83 127.69 1.00 2.34 16 2 N -0.53 -17.10 4.75 -927.03 -4.41 -21.50 16 3 C 0.11 3.58 4.99 85.56 0.43 4.01 16 4 C -0.14 -4.88 5.17 -19.74 -0.10 -4.99 16 5 C -0.04 -1.30 9.45 22.28 0.21 -1.09 16 6 C -0.10 -3.20 6.32 22.35 0.14 -3.06 16 7 Cl -0.07 -1.92 28.95 -2.72 -0.08 -2.00 16 8 C -0.06 -2.14 9.82 22.28 0.22 -1.92 16 9 C -0.23 -9.28 9.17 22.39 0.21 -9.07 16 10 C 0.14 6.06 5.37 22.58 0.12 6.18 16 11 O -0.22 -10.77 4.72 -22.74 -0.11 -10.87 16 12 C -0.39 -21.38 9.95 67.92 0.68 -20.71 16 13 H 0.09 4.90 5.44 -2.91 -0.02 4.89 16 14 C 0.02 1.32 5.49 84.83 0.47 1.78 16 15 N -0.92 -53.04 13.96 21.61 0.30 -52.74 16 16 Si 0.95 44.14 26.04 68.60 1.79 45.93 16 17 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.26 -12.14 7.01 99.48 0.70 -11.44 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 C 0.09 2.30 4.32 86.30 0.37 2.68 16 21 C -0.14 -3.44 4.46 -10.79 -0.05 -3.49 16 22 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 23 C -0.19 -4.34 9.47 30.59 0.29 -4.05 16 24 C -0.11 -2.12 2.70 -52.18 -0.14 -2.26 16 25 C -0.11 -1.76 9.85 71.98 0.71 -1.05 16 26 C -0.12 -1.90 8.86 71.98 0.64 -1.26 16 27 H 0.06 2.72 4.99 -2.39 -0.01 2.71 16 28 H 0.06 2.26 7.16 -2.39 -0.02 2.24 16 29 H 0.01 0.42 4.70 -2.38 -0.01 0.41 16 30 H 0.11 2.71 7.80 -2.39 -0.02 2.69 16 31 H 0.02 0.88 7.84 -2.38 -0.02 0.86 16 32 H 0.16 3.78 8.04 -2.91 -0.02 3.76 16 33 H 0.14 4.14 8.06 -2.91 -0.02 4.11 16 34 H 0.12 5.46 5.64 -2.91 -0.02 5.45 16 35 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 36 H 0.09 2.08 7.56 -2.38 -0.02 2.06 16 37 H 0.02 0.62 7.85 -2.39 -0.02 0.61 16 38 H 0.08 2.02 7.94 -2.38 -0.02 2.00 16 39 H 0.09 2.09 8.05 -2.39 -0.02 2.07 16 40 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.07 0.93 7.92 -2.38 -0.02 0.91 16 42 H 0.05 0.87 7.90 -2.39 -0.02 0.86 16 43 H 0.05 0.88 7.90 -2.38 -0.02 0.86 16 44 H 0.07 0.98 7.92 -2.39 -0.02 0.96 16 45 H 0.07 1.02 7.83 -2.39 -0.02 1.00 16 Total: -1.00 -58.57 367.99 3.65 -54.91 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.98 Total: 22.24 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 5.18 Total: -35.97 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -4.10 Total: -74.24 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: -0.11 Total: -10.87 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 1.79 Total: 45.93 kcal Atomic # 17 Polarization: -1.92 SS G_CDS: -0.08 Total: -2.00 kcal Total: -58.57 3.65 -54.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001654354311.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.157 kcal (2) G-P(sol) polarization free energy of solvation -58.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.912 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds