Wall clock time and date at job start Tue Mar 31 2020 14:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 119.99932 * 2 1 4 4 H 1.48497 * 109.46873 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47089 * 300.00677 * 3 2 1 6 6 H 1.48500 * 109.46952 * 60.00462 * 3 2 1 7 7 C 1.38811 * 119.99763 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99310 * 179.97438 * 7 2 1 9 9 N 1.36931 * 120.00373 * 359.97438 * 7 2 1 10 10 C 1.46500 * 120.00330 * 174.08365 * 9 7 2 11 11 C 1.53005 * 109.54000 * 300.69100 * 10 9 7 12 12 N 1.46507 * 109.46746 * 305.05576 * 11 10 9 13 13 C 1.34777 * 119.99586 * 175.90312 * 12 11 10 14 14 O 1.21570 * 120.00201 * 359.97438 * 13 12 11 15 15 C 1.47727 * 119.99916 * 180.02562 * 13 12 11 16 16 C 1.40153 * 120.53039 * 179.97438 * 15 13 12 17 17 C 1.38156 * 118.32258 * 179.74897 * 16 15 13 18 18 C 1.38759 * 119.28119 * 0.53577 * 17 16 15 19 19 F 1.35099 * 119.48769 * 179.72465 * 18 17 16 20 20 N 1.32143 * 121.01633 * 359.45104 * 18 17 16 21 21 C 1.31696 * 121.84243 * 0.27164 * 20 18 17 22 22 C 1.53176 * 109.54407 * 60.86092 * 10 9 7 23 23 C 1.53110 * 109.15292 * 63.06826 * 22 10 9 24 24 O 1.42903 * 109.48456 * 57.47761 * 23 22 10 25 25 C 1.42907 * 114.09696 * 298.88356 * 24 23 22 26 26 C 1.53091 * 109.41108 * 61.15933 * 25 24 23 27 27 H 0.97000 * 119.99984 * 359.97438 * 1 2 3 28 28 H 0.97003 * 119.99857 * 354.07766 * 9 7 2 29 29 H 1.08996 * 109.46904 * 185.05807 * 11 10 9 30 30 H 1.09002 * 109.47259 * 65.05398 * 11 10 9 31 31 H 0.96991 * 120.00332 * 355.90077 * 12 11 10 32 32 H 1.07997 * 120.83799 * 0.04411 * 16 15 13 33 33 H 1.07996 * 120.36292 * 180.25886 * 17 16 15 34 34 H 1.07999 * 119.70332 * 180.02562 * 21 20 18 35 35 H 1.08998 * 109.52160 * 182.88361 * 22 10 9 36 36 H 1.08997 * 109.52832 * 303.07723 * 22 10 9 37 37 H 1.08997 * 109.40732 * 297.48988 * 23 22 10 38 38 H 1.09006 * 109.48760 * 177.50346 * 23 22 10 39 39 H 1.08999 * 109.47989 * 301.18053 * 25 24 23 40 40 H 1.08991 * 109.49377 * 181.14974 * 25 24 23 41 41 H 1.09006 * 109.52189 * 182.48333 * 26 25 24 42 42 H 1.09001 * 109.57500 * 62.33325 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7101 1.3464 -0.0006 5 1 1.8913 2.3965 -1.2124 6 1 1.8915 2.3964 1.2126 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0005 10 6 2.0521 -3.6534 -0.1319 11 6 2.8304 -3.6623 -1.4492 12 7 1.9129 -3.3972 -2.5602 13 6 2.3910 -3.2751 -3.8144 14 8 3.5836 -3.3844 -4.0237 15 6 1.4660 -3.0072 -4.9346 16 6 1.9511 -2.8777 -6.2431 17 6 1.0451 -2.6326 -7.2568 18 6 -0.3024 -2.5125 -6.9483 19 9 -1.1914 -2.2673 -7.9356 20 7 -0.7301 -2.6395 -5.7045 21 6 0.0956 -2.8788 -4.7068 22 6 3.0264 -3.8089 1.0398 23 6 2.2326 -3.8802 2.3471 24 8 1.3060 -4.9662 2.2835 25 6 0.3409 -4.8492 1.2360 26 6 1.0585 -4.8189 -0.1159 27 1 -0.4850 0.8400 0.0004 28 1 0.3595 -2.3903 0.0865 29 1 3.2977 -4.6371 -1.5885 30 1 3.6001 -2.8909 -1.4216 31 1 0.9615 -3.3096 -2.3931 32 1 3.0061 -2.9719 -6.4543 33 1 1.3823 -2.5312 -8.2778 34 1 -0.2916 -2.9767 -3.7034 35 1 3.6031 -4.7253 0.9149 36 1 3.7015 -2.9536 1.0683 37 1 1.6891 -2.9466 2.4922 38 1 2.9177 -4.0353 3.1806 39 1 -0.2274 -3.9282 1.3666 40 1 -0.3368 -5.7021 1.2689 41 1 0.3275 -4.6854 -0.9134 42 1 1.5941 -5.7563 -0.2661 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699883679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:09 Heat of formation + Delta-G solvation = -72.667693 kcal Electronic energy + Delta-G solvation = -27959.633089 eV Core-core repulsion = 23854.794082 eV Total energy + Delta-G solvation = -4104.839006 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.22510 -40.58999 -39.51083 -38.49295 -35.91118 -33.70148 -32.86214 -32.38878 -31.13670 -30.71916 -29.23673 -27.01364 -24.50568 -24.17845 -23.88814 -23.07164 -22.05841 -20.45928 -18.82474 -18.37611 -17.69426 -17.48250 -17.17014 -16.26928 -15.76794 -15.60510 -15.35306 -15.16173 -14.91043 -14.66198 -14.41561 -14.14429 -13.89700 -13.69426 -13.51448 -13.20933 -13.13986 -12.94155 -12.75103 -12.29167 -12.08106 -11.83645 -11.49610 -10.97937 -10.96330 -10.86522 -10.38039 -10.26177 -10.22098 -10.06222 -9.87469 -9.77230 -9.62385 -9.24620 -9.18101 -8.90728 -8.60474 -7.16861 -5.92684 -3.23511 0.37327 0.88735 2.83835 3.30258 3.34040 3.39019 3.42383 3.43104 3.69106 4.24172 4.31274 4.45999 4.54855 4.60805 4.86767 5.10464 5.13969 5.15760 5.26986 5.37043 5.47211 5.48372 5.57860 5.63583 5.70016 5.81670 5.92972 6.00284 6.04670 6.13477 6.22430 6.29795 6.32696 6.46572 6.48102 6.64126 6.70485 6.83992 7.35762 7.59743 7.64849 7.80905 8.24058 8.43381 9.37408 9.86532 10.23097 11.28772 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010924 B = 0.004351 C = 0.003691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2562.463411 B = 6433.897579 C = 7583.437073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.004 4.004 3 Si 0.900 3.100 4 H -0.280 1.280 5 H -0.292 1.292 6 H -0.291 1.291 7 C -0.238 4.238 8 H 0.071 0.929 9 N -0.713 5.713 10 C 0.188 3.812 11 C 0.119 3.881 12 N -0.689 5.689 13 C 0.561 3.439 14 O -0.547 6.547 15 C -0.189 4.189 16 C 0.008 3.992 17 C -0.203 4.203 18 C 0.323 3.677 19 F -0.110 7.110 20 N -0.514 5.514 21 C 0.179 3.821 22 C -0.154 4.154 23 C 0.070 3.930 24 O -0.392 6.392 25 C 0.066 3.934 26 C -0.152 4.152 27 H 0.255 0.745 28 H 0.385 0.615 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.401 0.599 32 H 0.158 0.842 33 H 0.154 0.846 34 H 0.174 0.826 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.129 -9.518 -7.610 12.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.201 4.201 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.089 0.911 9 N -0.355 5.355 10 C 0.096 3.904 11 C -0.007 4.007 12 N -0.339 5.339 13 C 0.346 3.654 14 O -0.427 6.427 15 C -0.195 4.195 16 C -0.019 4.019 17 C -0.224 4.224 18 C 0.169 3.831 19 F -0.089 7.089 20 N -0.228 5.228 21 C 0.021 3.979 22 C -0.194 4.194 23 C -0.007 4.007 24 O -0.311 6.311 25 C -0.011 4.011 26 C -0.191 4.191 27 H 0.065 0.935 28 H 0.220 0.780 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.238 0.762 32 H 0.176 0.824 33 H 0.171 0.829 34 H 0.191 0.809 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.087 0.913 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.161 -9.504 -7.492 12.157 hybrid contribution 0.334 1.481 -0.538 1.611 sum 1.495 -8.023 -8.029 11.449 Atomic orbital electron populations 1.69638 1.04970 1.25743 1.57122 1.24686 0.95409 0.97517 1.02459 0.86234 0.79007 0.84446 0.77191 1.20549 1.21947 1.21857 1.19081 0.91005 0.83572 1.43188 0.91125 1.42494 1.06210 0.99454 1.87349 1.19851 0.91624 0.87402 0.91540 1.21872 0.92726 0.99893 0.86211 1.45632 1.11961 1.70284 1.05993 1.17758 0.87407 0.77551 0.82684 1.90752 1.15633 1.51784 1.84500 1.21173 0.95358 1.07234 0.95696 1.21620 1.01137 0.89046 0.90050 1.21800 0.91595 1.06694 1.02303 1.18422 0.85129 0.95240 0.84278 1.91635 1.68774 1.90741 1.57790 1.67033 1.40905 1.15781 0.99047 1.22848 0.88216 0.89582 0.97270 1.22480 0.99023 1.01476 0.96451 1.22450 0.91315 0.90389 0.96521 1.87809 1.44714 1.46222 1.52402 1.22460 0.90638 1.01690 0.86323 1.22371 0.99457 0.98766 0.98458 0.93463 0.78025 0.92683 0.90943 0.76220 0.82427 0.82878 0.80945 0.92517 0.90444 0.91444 0.90301 0.92266 0.89946 0.91309 0.91064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -25.17 13.07 55.49 0.73 -24.44 16 2 C 0.00 -0.10 5.50 -17.43 -0.10 -0.20 16 3 Si 0.90 21.29 29.55 -169.99 -5.02 16.27 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 7 C -0.24 -5.66 8.70 -15.06 -0.13 -5.79 16 8 H 0.07 1.71 6.75 -52.49 -0.35 1.35 16 9 N -0.71 -14.39 3.77 -47.07 -0.18 -14.56 16 10 C 0.19 3.08 0.41 -131.64 -0.05 3.02 16 11 C 0.12 1.97 4.32 -4.04 -0.02 1.95 16 12 N -0.69 -10.93 5.12 -61.28 -0.31 -11.24 16 13 C 0.56 9.18 7.78 -12.38 -0.10 9.08 16 14 O -0.55 -10.41 16.42 5.30 0.09 -10.32 16 15 C -0.19 -2.64 5.89 -104.83 -0.62 -3.26 16 16 C 0.01 0.09 9.71 -38.89 -0.38 -0.29 16 17 C -0.20 -2.14 10.07 -39.42 -0.40 -2.54 16 18 C 0.32 4.16 8.41 -17.23 -0.14 4.01 16 19 F -0.11 -1.39 17.29 2.25 0.04 -1.35 16 20 N -0.51 -7.45 10.36 -13.22 -0.14 -7.59 16 21 C 0.18 2.45 10.71 -17.13 -0.18 2.27 16 22 C -0.15 -2.46 4.83 -26.58 -0.13 -2.59 16 23 C 0.07 1.13 6.68 37.21 0.25 1.38 16 24 O -0.39 -6.38 10.77 -35.23 -0.38 -6.76 16 25 C 0.07 0.96 6.67 37.20 0.25 1.21 16 26 C -0.15 -2.12 4.80 -26.60 -0.13 -2.25 16 27 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 28 H 0.38 8.38 6.72 -40.82 -0.27 8.10 16 29 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 1.39 7.54 -51.93 -0.39 1.00 16 31 H 0.40 6.00 5.37 -40.82 -0.22 5.78 16 32 H 0.16 1.68 7.73 -52.49 -0.41 1.27 16 33 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 34 H 0.17 2.15 6.42 -52.49 -0.34 1.81 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.33 7.12 -51.93 -0.37 0.96 16 37 H 0.07 1.26 7.75 -51.93 -0.40 0.85 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.06 0.96 7.09 -51.93 -0.37 0.59 16 40 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 0.88 7.21 -51.93 -0.37 0.51 16 42 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 348.90 15.07 5.26 5.26 Total: -1.00 -29.10 348.90 -6.96 -36.06 By element: Atomic # 1 Polarization: 17.83 SS G_CDS: -5.17 Total: 12.66 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -1.87 Total: 6.02 kcal Atomic # 7 Polarization: -57.93 SS G_CDS: 0.10 Total: -57.84 kcal Atomic # 8 Polarization: -16.79 SS G_CDS: -0.29 Total: -17.08 kcal Atomic # 9 Polarization: -1.39 SS G_CDS: 0.04 Total: -1.35 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -29.10 -6.96 -36.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699883679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.604 kcal (2) G-P(sol) polarization free energy of solvation -29.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds