Wall clock time and date at job start Tue Mar 31 2020 14:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86807 * 119.99682 * 2 1 4 4 H 1.48503 * 109.46625 * 269.99430 * 3 2 1 5 5 H 1.48496 * 109.47160 * 29.99886 * 3 2 1 6 6 H 1.48502 * 109.46989 * 150.00239 * 3 2 1 7 7 C 1.38810 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99971 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00065 * 174.07937 * 9 7 2 11 11 C 1.53005 * 109.54166 * 300.69201 * 10 9 7 12 12 N 1.46503 * 109.46855 * 305.06021 * 11 10 9 13 13 C 1.34777 * 120.00037 * 175.90633 * 12 11 10 14 14 O 1.21534 * 119.99562 * 359.97438 * 13 12 11 15 15 C 1.47990 * 120.00294 * 179.97438 * 13 12 11 16 16 C 1.39901 * 120.93971 * 0.02562 * 15 13 12 17 17 C 1.38045 * 119.03435 * 180.02562 * 16 15 13 18 18 N 1.31864 * 120.98062 * 0.02562 * 17 16 15 19 19 C 1.31721 * 122.09630 * 359.97438 * 18 17 16 20 20 C 1.38535 * 120.84511 * 0.02562 * 19 18 17 21 21 F 1.35101 * 120.53640 * 179.97438 * 20 19 18 22 22 C 1.53178 * 109.54208 * 60.86696 * 10 9 7 23 23 C 1.53098 * 109.15687 * 63.06712 * 22 10 9 24 24 O 1.42904 * 109.49012 * 57.47487 * 23 22 10 25 25 C 1.42902 * 114.09407 * 298.89002 * 24 23 22 26 26 C 1.53097 * 109.41978 * 61.15473 * 25 24 23 27 27 H 0.97010 * 119.99947 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99813 * 354.07851 * 9 7 2 29 29 H 1.08996 * 109.46841 * 185.05680 * 11 10 9 30 30 H 1.08997 * 109.47304 * 65.05449 * 11 10 9 31 31 H 0.96999 * 120.00336 * 355.89488 * 12 11 10 32 32 H 1.07995 * 120.48313 * 0.03618 * 16 15 13 33 33 H 1.08003 * 119.50896 * 179.72139 * 17 16 15 34 34 H 1.08000 * 119.57358 * 180.02562 * 19 18 17 35 35 H 1.09005 * 109.52031 * 182.88749 * 22 10 9 36 36 H 1.09004 * 109.52056 * 303.07079 * 22 10 9 37 37 H 1.08999 * 109.40654 * 297.49183 * 23 22 10 38 38 H 1.09001 * 109.48950 * 177.50737 * 23 22 10 39 39 H 1.09002 * 109.47854 * 301.17078 * 25 24 23 40 40 H 1.09004 * 109.49079 * 181.14510 * 25 24 23 41 41 H 1.08991 * 109.52367 * 182.48617 * 26 25 24 42 42 H 1.09004 * 109.56989 * 62.32651 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0523 -3.6534 -0.1298 11 6 2.8315 -3.6628 -1.4465 12 7 1.9149 -3.3981 -2.5582 13 6 2.3939 -3.2766 -3.8122 14 8 3.5862 -3.3861 -4.0204 15 6 1.4679 -3.0097 -4.9354 16 6 0.0921 -2.8795 -4.7179 17 6 -0.7358 -2.6313 -5.7943 18 7 -0.2477 -2.5172 -7.0139 19 6 1.0401 -2.6323 -7.2660 20 6 1.9440 -2.8815 -6.2462 21 9 3.2634 -2.9989 -6.5118 22 6 3.0256 -3.8084 1.0428 23 6 2.2308 -3.8792 2.3495 24 8 1.3042 -4.9652 2.2856 25 6 0.3400 -4.8486 1.2374 26 6 1.0585 -4.8189 -0.1142 27 1 -0.4850 0.8401 -0.0004 28 1 0.3595 -2.3902 0.0868 29 1 3.2989 -4.6377 -1.5850 30 1 3.6012 -2.8915 -1.4187 31 1 0.9633 -3.3105 -2.3920 32 1 -0.3164 -2.9717 -3.7224 33 1 -1.7997 -2.5339 -5.6358 34 1 1.3957 -2.5311 -8.2807 35 1 3.6025 -4.7249 0.9186 36 1 3.7007 -2.9531 1.0713 37 1 1.6872 -2.9456 2.4938 38 1 2.9153 -4.0340 3.1835 39 1 -0.2284 -3.9276 1.3672 40 1 -0.3378 -5.7016 1.2701 41 1 0.3282 -4.6856 -0.9121 42 1 1.5943 -5.7564 -0.2635 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699883887.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:54 Heat of formation + Delta-G solvation = -74.253960 kcal Electronic energy + Delta-G solvation = -28273.105343 eV Core-core repulsion = 24168.197551 eV Total energy + Delta-G solvation = -4104.907792 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.93312 -40.45447 -39.56086 -38.60613 -35.91744 -33.76176 -32.81150 -32.05247 -31.00185 -30.74168 -29.25930 -27.19932 -24.84711 -24.16121 -23.54387 -23.09183 -22.10150 -20.49019 -18.88345 -18.20468 -17.44025 -17.25901 -17.18939 -15.96215 -15.85970 -15.61420 -15.51714 -15.32072 -14.76248 -14.49680 -14.46198 -14.36214 -13.88473 -13.80043 -13.58604 -13.48547 -13.08037 -12.82496 -12.33895 -12.22581 -12.09928 -11.85763 -11.51104 -10.99018 -10.96800 -10.88297 -10.42618 -10.28836 -10.09606 -10.02110 -9.88619 -9.79859 -9.56633 -9.20312 -9.13351 -8.92323 -8.62809 -7.19107 -5.95166 -3.25742 0.49241 0.74999 2.95482 3.28749 3.33705 3.40224 3.41742 3.65849 3.84900 4.23359 4.29156 4.44116 4.49097 4.59097 4.69653 5.08236 5.12902 5.21112 5.24804 5.43907 5.46192 5.49290 5.55689 5.62274 5.65756 5.67835 5.90647 5.98017 6.02202 6.11403 6.20226 6.30642 6.36769 6.44719 6.46300 6.62709 6.68585 6.82279 7.56795 7.57507 7.62832 7.77988 8.21832 8.41488 9.35268 9.83952 10.20800 11.26272 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010798 B = 0.004739 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.358209 B = 5906.471876 C = 7022.133428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.004 4.004 3 Si 0.901 3.099 4 H -0.290 1.290 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.712 5.712 10 C 0.188 3.812 11 C 0.119 3.881 12 N -0.686 5.686 13 C 0.551 3.449 14 O -0.532 6.532 15 C -0.118 4.118 16 C -0.105 4.105 17 C 0.083 3.917 18 N -0.446 5.446 19 C 0.065 3.935 20 C 0.102 3.898 21 F -0.108 7.108 22 C -0.154 4.154 23 C 0.070 3.930 24 O -0.392 6.392 25 C 0.066 3.934 26 C -0.152 4.152 27 H 0.256 0.744 28 H 0.385 0.615 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.402 0.598 32 H 0.152 0.848 33 H 0.170 0.830 34 H 0.172 0.828 35 H 0.056 0.944 36 H 0.077 0.923 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.068 0.932 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.907 -9.317 -6.333 11.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.200 4.200 3 Si 0.732 3.268 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.207 1.207 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.354 5.354 10 C 0.096 3.904 11 C -0.007 4.007 12 N -0.336 5.336 13 C 0.336 3.664 14 O -0.410 6.410 15 C -0.130 4.130 16 C -0.125 4.125 17 C -0.073 4.073 18 N -0.154 5.154 19 C -0.094 4.094 20 C 0.079 3.921 21 F -0.086 7.086 22 C -0.194 4.194 23 C -0.006 4.006 24 O -0.311 6.311 25 C -0.011 4.011 26 C -0.190 4.190 27 H 0.066 0.934 28 H 0.220 0.780 29 H 0.073 0.927 30 H 0.090 0.910 31 H 0.238 0.762 32 H 0.170 0.830 33 H 0.188 0.812 34 H 0.189 0.811 35 H 0.075 0.925 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.462 -9.238 -6.998 11.681 hybrid contribution 0.568 1.297 0.527 1.511 sum -0.894 -7.941 -6.470 10.282 Atomic orbital electron populations 1.69632 1.04966 1.25824 1.57206 1.24675 0.95428 0.97508 1.02421 0.86298 0.78860 0.84082 0.77595 1.21767 1.21768 1.20708 1.19047 0.91004 0.83603 1.43201 0.91199 1.42474 1.06161 0.99429 1.87382 1.19851 0.91633 0.87410 0.91494 1.21884 0.92750 0.99927 0.86138 1.45573 1.12007 1.70257 1.05759 1.17823 0.87420 0.78328 0.82857 1.90807 1.15300 1.50555 1.84357 1.20741 0.95249 1.03372 0.93634 1.22437 0.91741 0.96389 1.01961 1.22811 1.01127 0.96363 0.87038 1.67570 1.13750 1.10315 1.23791 1.22924 0.88170 0.99058 0.99241 1.18904 0.79727 1.00093 0.93393 1.91606 1.30498 1.92365 1.94103 1.22481 0.99027 1.01518 0.96422 1.22447 0.91307 0.90371 0.96520 1.87810 1.44751 1.46259 1.52306 1.22459 0.90654 1.01658 0.86306 1.22368 0.99433 0.98776 0.98437 0.93444 0.78048 0.92675 0.90952 0.76152 0.83044 0.81250 0.81096 0.92495 0.90425 0.91434 0.90263 0.92283 0.89949 0.91370 0.91069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -24.92 13.07 55.49 0.73 -24.19 16 2 C 0.00 -0.10 5.50 -17.43 -0.10 -0.19 16 3 Si 0.90 21.34 29.55 -169.99 -5.02 16.31 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.24 -5.69 8.70 -15.06 -0.13 -5.82 16 8 H 0.07 1.71 6.75 -52.49 -0.35 1.35 16 9 N -0.71 -14.39 3.77 -47.06 -0.18 -14.57 16 10 C 0.19 3.12 0.41 -131.63 -0.05 3.07 16 11 C 0.12 2.04 4.32 -4.04 -0.02 2.02 16 12 N -0.69 -11.34 5.12 -61.20 -0.31 -11.66 16 13 C 0.55 9.83 7.79 -12.26 -0.10 9.73 16 14 O -0.53 -11.22 15.48 5.34 0.08 -11.14 16 15 C -0.12 -1.78 5.91 -104.60 -0.62 -2.40 16 16 C -0.10 -1.28 9.61 -39.03 -0.38 -1.66 16 17 C 0.08 0.92 11.17 -17.61 -0.20 0.72 16 18 N -0.45 -5.46 10.33 -13.24 -0.14 -5.60 16 19 C 0.07 0.78 11.17 -17.49 -0.20 0.59 16 20 C 0.10 1.48 7.33 -38.79 -0.28 1.19 16 21 F -0.11 -1.74 15.72 2.25 0.04 -1.71 16 22 C -0.15 -2.50 4.83 -26.59 -0.13 -2.62 16 23 C 0.07 1.14 6.68 37.21 0.25 1.38 16 24 O -0.39 -6.37 10.77 -35.23 -0.38 -6.75 16 25 C 0.07 0.96 6.67 37.21 0.25 1.20 16 26 C -0.15 -2.12 4.80 -26.59 -0.13 -2.25 16 27 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 28 H 0.38 8.31 6.72 -40.82 -0.27 8.03 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.44 7.54 -51.93 -0.39 1.05 16 31 H 0.40 6.12 5.45 -40.82 -0.22 5.90 16 32 H 0.15 1.63 6.54 -52.49 -0.34 1.29 16 33 H 0.17 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.17 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.36 7.12 -51.93 -0.37 0.99 16 37 H 0.07 1.26 7.75 -51.93 -0.40 0.86 16 38 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.06 0.94 7.09 -51.93 -0.37 0.58 16 40 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.07 0.87 7.20 -51.93 -0.37 0.49 16 42 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 347.33 15.07 5.23 5.23 Total: -1.00 -29.88 347.33 -6.97 -36.85 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -5.19 Total: 12.26 kcal Atomic # 6 Polarization: 6.79 SS G_CDS: -1.82 Total: 4.96 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.10 Total: -56.02 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.30 Total: -17.89 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.88 -6.97 -36.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699883887.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.405 kcal (2) G-P(sol) polarization free energy of solvation -29.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds