Wall clock time and date at job start Tue Mar 31 2020 14:38:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86807 * 119.99682 * 2 1 4 4 H 1.48503 * 109.46625 * 269.99430 * 3 2 1 5 5 H 1.48496 * 109.47160 * 29.99886 * 3 2 1 6 6 H 1.48502 * 109.46989 * 150.00239 * 3 2 1 7 7 C 1.38810 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99971 * 180.02562 * 7 2 1 9 9 N 1.36935 * 119.99835 * 0.02562 * 7 2 1 10 10 C 1.46501 * 120.00065 * 174.07937 * 9 7 2 11 11 C 1.53005 * 109.54166 * 300.69201 * 10 9 7 12 12 N 1.46503 * 109.46855 * 305.06021 * 11 10 9 13 13 C 1.34777 * 120.00037 * 175.90633 * 12 11 10 14 14 O 1.21534 * 119.99562 * 359.97438 * 13 12 11 15 15 C 1.47990 * 120.00294 * 179.97438 * 13 12 11 16 16 C 1.39901 * 120.93971 * 0.02562 * 15 13 12 17 17 C 1.38045 * 119.03435 * 180.02562 * 16 15 13 18 18 N 1.31864 * 120.98062 * 0.02562 * 17 16 15 19 19 C 1.31721 * 122.09630 * 359.97438 * 18 17 16 20 20 C 1.38535 * 120.84511 * 0.02562 * 19 18 17 21 21 F 1.35101 * 120.53640 * 179.97438 * 20 19 18 22 22 C 1.53178 * 109.54208 * 60.86696 * 10 9 7 23 23 C 1.53098 * 109.15687 * 63.06712 * 22 10 9 24 24 O 1.42904 * 109.49012 * 57.47487 * 23 22 10 25 25 C 1.42902 * 114.09407 * 298.89002 * 24 23 22 26 26 C 1.53097 * 109.41978 * 61.15473 * 25 24 23 27 27 H 0.97010 * 119.99947 * 0.02562 * 1 2 3 28 28 H 0.96999 * 119.99813 * 354.07851 * 9 7 2 29 29 H 1.08996 * 109.46841 * 185.05680 * 11 10 9 30 30 H 1.08997 * 109.47304 * 65.05449 * 11 10 9 31 31 H 0.96999 * 120.00336 * 355.89488 * 12 11 10 32 32 H 1.07995 * 120.48313 * 0.03618 * 16 15 13 33 33 H 1.08003 * 119.50896 * 179.72139 * 17 16 15 34 34 H 1.08000 * 119.57358 * 180.02562 * 19 18 17 35 35 H 1.09005 * 109.52031 * 182.88749 * 22 10 9 36 36 H 1.09004 * 109.52056 * 303.07079 * 22 10 9 37 37 H 1.08999 * 109.40654 * 297.49183 * 23 22 10 38 38 H 1.09001 * 109.48950 * 177.50737 * 23 22 10 39 39 H 1.09002 * 109.47854 * 301.17078 * 25 24 23 40 40 H 1.09004 * 109.49079 * 181.14510 * 25 24 23 41 41 H 1.08991 * 109.52367 * 182.48617 * 26 25 24 42 42 H 1.09004 * 109.56989 * 62.32651 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0523 -3.6534 -0.1298 11 6 2.8315 -3.6628 -1.4465 12 7 1.9149 -3.3981 -2.5582 13 6 2.3939 -3.2766 -3.8122 14 8 3.5862 -3.3861 -4.0204 15 6 1.4679 -3.0097 -4.9354 16 6 0.0921 -2.8795 -4.7179 17 6 -0.7358 -2.6313 -5.7943 18 7 -0.2477 -2.5172 -7.0139 19 6 1.0401 -2.6323 -7.2660 20 6 1.9440 -2.8815 -6.2462 21 9 3.2634 -2.9989 -6.5118 22 6 3.0256 -3.8084 1.0428 23 6 2.2308 -3.8792 2.3495 24 8 1.3042 -4.9652 2.2856 25 6 0.3400 -4.8486 1.2374 26 6 1.0585 -4.8189 -0.1142 27 1 -0.4850 0.8401 -0.0004 28 1 0.3595 -2.3902 0.0868 29 1 3.2989 -4.6377 -1.5850 30 1 3.6012 -2.8915 -1.4187 31 1 0.9633 -3.3105 -2.3920 32 1 -0.3164 -2.9717 -3.7224 33 1 -1.7997 -2.5339 -5.6358 34 1 1.3957 -2.5311 -8.2807 35 1 3.6025 -4.7249 0.9186 36 1 3.7007 -2.9531 1.0713 37 1 1.6872 -2.9456 2.4938 38 1 2.9153 -4.0340 3.1835 39 1 -0.2284 -3.9276 1.3672 40 1 -0.3378 -5.7016 1.2701 41 1 0.3282 -4.6856 -0.9121 42 1 1.5943 -5.7564 -0.2635 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699883887.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:53 Heat of formation + Delta-G solvation = -95.047101 kcal Electronic energy + Delta-G solvation = -28274.007001 eV Core-core repulsion = 24168.197551 eV Total energy + Delta-G solvation = -4105.809450 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 323.143 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.07887 -41.61295 -40.80964 -39.91478 -37.34125 -35.30161 -34.24705 -33.39370 -31.98685 -31.96994 -30.95398 -28.53398 -26.09612 -25.81346 -24.59470 -24.37654 -23.37629 -21.81090 -20.25365 -19.49216 -19.05504 -18.42430 -18.36078 -17.24146 -17.08146 -16.89482 -16.79679 -16.64157 -16.16605 -16.03917 -15.77456 -15.41194 -15.34710 -15.28711 -14.81775 -14.51591 -14.40505 -14.21678 -13.74196 -13.65000 -13.24256 -13.13523 -12.94779 -12.88082 -12.70198 -12.24791 -12.10284 -11.73511 -11.61136 -11.44436 -11.13788 -11.11854 -10.95423 -10.71100 -10.33147 -10.14143 -10.03179 -8.98860 -7.93101 -5.18335 -0.60692 -0.20323 1.41320 1.46409 1.49366 1.69880 2.01507 2.53785 2.58422 2.83018 3.08443 3.34332 3.38424 3.43929 3.55882 3.66311 3.73364 3.83913 3.97237 4.13175 4.23258 4.27921 4.47611 4.49644 4.59810 4.65446 4.73519 4.74500 4.76028 4.82523 4.89322 5.01789 5.08599 5.20284 5.26463 5.33856 5.40504 5.43782 5.61260 6.29165 6.37764 6.42641 6.62584 7.05665 7.39736 8.06799 8.34903 9.28309 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010798 B = 0.004739 C = 0.003986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2592.358209 B = 5906.471876 C = 7022.133428 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.951 5.951 2 C -0.054 4.054 3 Si 0.940 3.060 4 H -0.301 1.301 5 H -0.297 1.297 6 H -0.278 1.278 7 C -0.214 4.214 8 H 0.062 0.938 9 N -0.710 5.710 10 C 0.187 3.813 11 C 0.124 3.876 12 N -0.679 5.679 13 C 0.546 3.454 14 O -0.574 6.574 15 C -0.139 4.139 16 C -0.101 4.101 17 C 0.094 3.906 18 N -0.452 5.452 19 C 0.078 3.922 20 C 0.078 3.922 21 F -0.125 7.125 22 C -0.152 4.152 23 C 0.076 3.924 24 O -0.397 6.397 25 C 0.064 3.936 26 C -0.144 4.144 27 H 0.248 0.752 28 H 0.380 0.620 29 H 0.070 0.930 30 H 0.039 0.961 31 H 0.409 0.591 32 H 0.166 0.834 33 H 0.207 0.793 34 H 0.201 0.799 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.037 0.963 38 H 0.099 0.901 39 H 0.040 0.960 40 H 0.113 0.887 41 H 0.083 0.917 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 -10.801 -6.832 13.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.248 4.248 3 Si 0.773 3.227 4 H -0.230 1.230 5 H -0.224 1.224 6 H -0.204 1.204 7 C -0.346 4.346 8 H 0.080 0.920 9 N -0.351 5.351 10 C 0.096 3.904 11 C -0.002 4.002 12 N -0.329 5.329 13 C 0.332 3.668 14 O -0.455 6.455 15 C -0.151 4.151 16 C -0.122 4.122 17 C -0.062 4.062 18 N -0.161 5.161 19 C -0.081 4.081 20 C 0.055 3.945 21 F -0.103 7.103 22 C -0.192 4.192 23 C -0.001 4.001 24 O -0.316 6.316 25 C -0.012 4.012 26 C -0.182 4.182 27 H 0.057 0.943 28 H 0.214 0.786 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.247 0.753 32 H 0.184 0.816 33 H 0.223 0.777 34 H 0.218 0.782 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.056 0.944 38 H 0.117 0.883 39 H 0.058 0.942 40 H 0.131 0.869 41 H 0.102 0.898 42 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -2.689 -10.750 -7.486 13.373 hybrid contribution 0.950 1.681 0.683 2.048 sum -1.739 -9.070 -6.803 11.470 Atomic orbital electron populations 1.69708 1.05480 1.25415 1.59598 1.25083 0.95989 0.99285 1.04394 0.85647 0.78156 0.82283 0.76662 1.22974 1.22386 1.20394 1.19146 0.90745 0.84809 1.39894 0.91967 1.42463 1.05891 0.99776 1.87002 1.20041 0.92266 0.86912 0.91198 1.21787 0.92290 0.99576 0.86530 1.45527 1.12240 1.69726 1.05385 1.18287 0.87382 0.77430 0.83671 1.90775 1.17149 1.52501 1.85029 1.20694 0.96079 1.05337 0.92966 1.22623 0.90490 0.95846 1.03207 1.23410 1.02583 0.94071 0.86122 1.67707 1.13591 1.10451 1.24331 1.23331 0.87667 0.97243 0.99829 1.19218 0.79507 1.01739 0.93999 1.91557 1.31776 1.92757 1.94208 1.22446 0.98741 1.01824 0.96199 1.22362 0.91305 0.89283 0.97153 1.87813 1.44925 1.45798 1.53088 1.22598 0.90557 1.02140 0.85947 1.22337 0.99100 0.97950 0.98833 0.94271 0.78610 0.91150 0.94204 0.75262 0.81622 0.77660 0.78248 0.90321 0.92221 0.94441 0.88338 0.94190 0.86874 0.89811 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -51.37 13.07 21.65 0.28 -51.08 16 2 C -0.05 -2.80 5.50 84.86 0.47 -2.33 16 3 Si 0.94 44.41 29.55 68.60 2.03 46.44 16 4 H -0.30 -14.65 7.11 99.48 0.71 -13.94 16 5 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 6 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 7 C -0.21 -10.28 8.70 84.03 0.73 -9.55 16 8 H 0.06 3.08 6.75 -2.91 -0.02 3.06 16 9 N -0.71 -28.41 3.77 -302.81 -1.14 -29.55 16 10 C 0.19 5.96 0.41 3.72 0.00 5.96 16 11 C 0.12 4.19 4.32 86.38 0.37 4.56 16 12 N -0.68 -22.01 5.12 -465.83 -2.39 -24.39 16 13 C 0.55 19.54 7.79 86.83 0.68 20.22 16 14 O -0.57 -24.79 15.48 -3.82 -0.06 -24.85 16 15 C -0.14 -4.12 5.91 -19.85 -0.12 -4.24 16 16 C -0.10 -2.28 9.61 22.63 0.22 -2.06 16 17 C 0.09 1.79 11.17 84.64 0.95 2.74 16 18 N -0.45 -9.84 10.33 -195.81 -2.02 -11.86 16 19 C 0.08 1.72 11.17 84.78 0.95 2.67 16 20 C 0.08 2.23 7.33 22.78 0.17 2.40 16 21 F -0.12 -4.12 15.72 44.97 0.71 -3.41 16 22 C -0.15 -4.74 4.83 30.69 0.15 -4.59 16 23 C 0.08 2.36 6.68 72.01 0.48 2.84 16 24 O -0.40 -11.98 10.77 -148.98 -1.60 -13.59 16 25 C 0.06 1.69 6.67 72.01 0.48 2.17 16 26 C -0.14 -3.62 4.80 30.68 0.15 -3.47 16 27 H 0.25 13.42 8.31 -92.70 -0.77 12.65 16 28 H 0.38 16.19 6.72 -92.71 -0.62 15.57 16 29 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.04 1.61 7.54 -2.39 -0.02 1.59 16 31 H 0.41 11.90 5.45 -92.71 -0.50 11.40 16 32 H 0.17 3.17 6.54 -2.91 -0.02 3.15 16 33 H 0.21 2.36 8.06 -2.91 -0.02 2.34 16 34 H 0.20 3.08 8.06 -2.91 -0.02 3.05 16 35 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.06 2.07 7.12 -2.38 -0.02 2.05 16 37 H 0.04 1.39 7.75 -2.39 -0.02 1.37 16 38 H 0.10 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.04 1.22 7.09 -2.39 -0.02 1.20 16 40 H 0.11 2.32 8.14 -2.38 -0.02 2.30 16 41 H 0.08 1.87 7.20 -2.39 -0.02 1.85 16 42 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -65.49 347.33 1.42 -64.07 By element: Atomic # 1 Polarization: 30.97 SS G_CDS: -0.05 Total: 30.92 kcal Atomic # 6 Polarization: 11.64 SS G_CDS: 5.67 Total: 17.31 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -5.27 Total: -116.89 kcal Atomic # 8 Polarization: -36.77 SS G_CDS: -1.66 Total: -38.44 kcal Atomic # 9 Polarization: -4.12 SS G_CDS: 0.71 Total: -3.41 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.44 kcal Total: -65.49 1.42 -64.07 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699883887.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.978 kcal (2) G-P(sol) polarization free energy of solvation -65.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds