Wall clock time and date at job start Tue Mar 31 2020 13:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86801 * 120.00014 * 2 1 4 4 H 1.48496 * 109.46948 * 240.00304 * 3 2 1 5 5 H 1.48503 * 109.47100 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47034 * 120.00261 * 3 2 1 7 7 C 1.37877 * 119.99954 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99924 * 181.96868 * 7 2 1 9 9 C 1.50701 * 119.99805 * 1.97008 * 7 2 1 10 10 C 1.52999 * 115.55255 * 84.65055 * 9 7 2 11 11 N 1.46508 * 109.47046 * 57.83639 * 10 9 7 12 12 C 1.34779 * 119.99634 * 185.20034 * 11 10 9 13 13 O 1.21476 * 120.00210 * 5.58617 * 12 11 10 14 14 C 1.48471 * 119.99184 * 185.59050 * 12 11 10 15 15 C 1.39607 * 120.49625 * 174.36514 * 14 12 11 16 16 C 1.38856 * 118.42802 * 179.97438 * 15 14 12 17 17 N 1.32058 * 119.24258 * 359.97438 * 16 15 14 18 18 C 1.32674 * 120.95599 * 0.02562 * 17 16 15 19 19 C 1.48332 * 119.14000 * 179.72169 * 18 17 16 20 20 C 1.39369 * 120.12311 * 179.72063 * 19 18 17 21 21 C 1.38018 * 119.87012 * 179.74050 * 20 19 18 22 22 C 1.38323 * 120.12518 * 0.53634 * 21 20 19 23 23 C 1.38329 * 120.25119 * 359.73542 * 22 21 20 24 24 C 1.38011 * 120.12303 * 359.97438 * 23 22 21 25 25 N 1.32386 * 121.72084 * 359.97438 * 18 17 16 26 26 C 1.53006 * 117.49742 * 230.31628 * 9 7 2 27 27 C 1.52995 * 117.49948 * 298.97771 * 9 7 2 28 28 H 0.97003 * 119.99573 * 5.01323 * 1 2 3 29 29 H 1.09003 * 109.46783 * 297.83657 * 10 9 7 30 30 H 1.08999 * 109.47200 * 177.83933 * 10 9 7 31 31 H 0.96998 * 119.99847 * 5.19919 * 11 10 9 32 32 H 1.08002 * 120.78636 * 359.95141 * 15 14 12 33 33 H 1.07994 * 120.37449 * 180.02562 * 16 15 14 34 34 H 1.07999 * 120.06368 * 0.02562 * 20 19 18 35 35 H 1.07995 * 119.93655 * 180.27518 * 21 20 19 36 36 H 1.08002 * 119.87731 * 179.76632 * 22 21 20 37 37 H 1.08005 * 119.93999 * 179.97438 * 23 22 21 38 38 H 1.08000 * 120.06179 * 180.02562 * 24 23 22 39 39 H 1.08991 * 117.49934 * 215.00191 * 26 9 7 40 40 H 1.08997 * 117.49811 * 0.02804 * 26 9 7 41 41 H 1.09002 * 117.50088 * 359.97438 * 27 9 7 42 42 H 1.09003 * 117.50285 * 144.97385 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0841 -1.1943 0.0316 9 6 1.2517 -2.4987 -0.0460 10 6 0.8515 -2.9815 -1.4416 11 7 2.0501 -3.1213 -2.2723 12 6 1.9324 -3.4350 -3.5778 13 8 0.8327 -3.5021 -4.0896 14 6 3.1468 -3.6986 -4.3902 15 6 3.0343 -4.1380 -5.7106 16 6 4.1982 -4.3707 -6.4312 17 7 5.3673 -4.1706 -5.8507 18 6 5.4425 -3.7524 -4.5938 19 6 6.7769 -3.5467 -3.9797 20 6 6.8798 -3.1024 -2.6627 21 6 8.1240 -2.9178 -2.0947 22 6 9.2676 -3.1623 -2.8335 23 6 9.1715 -3.5980 -4.1429 24 6 7.9325 -3.7917 -4.7192 25 7 4.3577 -3.5188 -3.8719 26 6 1.6180 -3.5622 0.9913 27 6 0.2942 -2.8024 1.1080 28 1 -0.4850 0.8369 -0.0734 29 1 0.1763 -2.2569 -1.8969 30 1 0.3497 -3.9458 -1.3624 31 1 2.9284 -2.9880 -1.8828 32 1 2.0650 -4.2935 -6.1607 33 1 4.1477 -4.7108 -7.4550 34 1 5.9876 -2.9073 -2.0863 35 1 8.2050 -2.5778 -1.0729 36 1 10.2393 -3.0130 -2.3863 37 1 10.0677 -3.7870 -4.7152 38 1 7.8587 -4.1324 -5.7414 39 1 1.5737 -4.6056 0.6794 40 1 2.4031 -3.3180 1.7068 41 1 0.2091 -2.0587 1.9004 42 1 -0.6211 -3.3457 0.8730 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772087417.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:43:37 Heat of formation + Delta-G solvation = 47.508334 kcal Electronic energy + Delta-G solvation = -26000.507305 eV Core-core repulsion = 22331.648747 eV Total energy + Delta-G solvation = -3668.858558 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.36685 -40.57988 -39.67915 -38.50449 -35.44793 -34.69239 -34.15713 -33.97602 -31.82392 -31.00054 -28.69029 -27.46149 -26.04123 -25.66659 -23.36557 -22.98092 -22.78019 -21.63896 -21.26359 -19.43967 -18.79142 -18.12359 -17.57225 -16.81543 -16.69349 -16.66259 -16.61349 -16.36934 -15.78965 -15.60926 -15.49903 -15.19803 -14.75807 -14.49471 -14.39178 -14.23484 -13.85423 -13.62271 -13.50002 -12.94365 -12.83891 -12.43512 -12.35796 -12.05930 -12.04701 -12.00952 -11.97344 -11.66444 -11.37810 -11.18873 -10.99352 -10.49273 -10.41499 -10.16709 -9.88573 -9.85164 -9.51707 -8.12516 -6.24877 -0.81052 -0.40057 0.51027 0.61007 1.39566 1.41074 1.47014 1.65816 1.96276 2.40150 2.53983 2.60416 2.89696 3.05293 3.16394 3.42574 3.60792 3.66206 3.91721 4.09166 4.14945 4.20760 4.22019 4.38728 4.49424 4.51335 4.58681 4.62588 4.66667 4.72230 4.94932 4.97218 5.00855 5.11928 5.18003 5.27008 5.40847 5.50982 5.53930 5.57283 5.61299 5.66346 5.75016 5.76472 6.05098 6.34260 6.50593 6.81173 6.82940 7.06777 7.44560 8.95046 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.010364 B = 0.004056 C = 0.003376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2700.954280 B = 6901.006486 C = 8291.892383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.029 3.971 3 Si 0.942 3.058 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.267 1.267 7 C -0.501 4.501 8 H 0.059 0.941 9 C 0.000 4.000 10 C 0.174 3.826 11 N -0.673 5.673 12 C 0.555 3.445 13 O -0.568 6.568 14 C 0.123 3.877 15 C -0.174 4.174 16 C 0.169 3.831 17 N -0.505 5.505 18 C 0.346 3.654 19 C -0.072 4.072 20 C -0.089 4.089 21 C -0.136 4.136 22 C -0.095 4.095 23 C -0.130 4.130 24 C -0.076 4.076 25 N -0.505 5.505 26 C -0.180 4.180 27 C -0.149 4.149 28 H 0.259 0.741 29 H 0.037 0.963 30 H 0.050 0.950 31 H 0.415 0.585 32 H 0.175 0.825 33 H 0.229 0.771 34 H 0.121 0.879 35 H 0.142 0.858 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.143 0.857 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.113 -9.643 -10.522 22.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.172 4.172 3 Si 0.768 3.232 4 H -0.204 1.204 5 H -0.214 1.214 6 H -0.192 1.192 7 C -0.539 4.539 8 H 0.077 0.923 9 C -0.001 4.001 10 C 0.050 3.950 11 N -0.320 5.320 12 C 0.339 3.661 13 O -0.447 6.447 14 C -0.025 4.025 15 C -0.197 4.197 16 C 0.001 3.999 17 N -0.219 5.219 18 C 0.082 3.918 19 C -0.074 4.074 20 C -0.109 4.109 21 C -0.154 4.154 22 C -0.113 4.113 23 C -0.147 4.147 24 C -0.096 4.096 25 N -0.222 5.222 26 C -0.217 4.217 27 C -0.187 4.187 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.251 0.749 32 H 0.192 0.808 33 H 0.245 0.755 34 H 0.139 0.861 35 H 0.160 0.840 36 H 0.173 0.827 37 H 0.175 0.825 38 H 0.161 0.839 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 16.962 -9.418 -10.322 21.976 hybrid contribution -0.940 1.205 0.072 1.530 sum 16.022 -8.213 -10.251 20.718 Atomic orbital electron populations 1.70090 1.06974 1.27349 1.49780 1.25616 0.95460 1.01720 0.94427 0.85865 0.78563 0.80010 0.78719 1.20398 1.21429 1.19182 1.20574 0.92421 0.89616 1.51283 0.92309 1.19054 1.00465 0.94121 0.86454 1.20764 0.85549 0.97611 0.91058 1.45781 1.11829 1.65988 1.08451 1.18220 0.87470 0.77954 0.82458 1.90725 1.27255 1.54670 1.72086 1.21547 0.91157 0.95905 0.93852 1.23254 1.03974 0.98830 0.93670 1.24103 0.84980 0.89275 1.01555 1.68343 1.30033 1.13009 1.10500 1.21603 0.92279 0.91022 0.86903 1.18217 0.88665 1.05743 0.94823 1.21434 0.99171 0.96364 0.93942 1.21411 0.91794 1.00808 1.01359 1.21734 0.99429 0.95833 0.94297 1.21488 0.97669 0.99767 0.95795 1.21443 0.91069 0.96685 1.00370 1.68221 0.98421 1.16286 1.39227 1.23040 0.98630 0.96027 1.03977 1.22394 0.92486 1.01595 1.02245 0.93217 0.94444 0.93166 0.74864 0.80761 0.75450 0.86102 0.84022 0.82708 0.82457 0.83929 0.89227 0.89786 0.91678 0.90782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.34 12.72 21.45 0.27 -51.07 16 2 C 0.03 1.54 5.43 84.65 0.46 2.00 16 3 Si 0.94 43.22 29.54 68.60 2.03 45.25 16 4 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 6 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 7 C -0.50 -26.06 8.38 25.60 0.21 -25.84 16 8 H 0.06 3.00 7.81 -2.91 -0.02 2.98 16 9 C 0.00 -0.01 1.51 -52.93 -0.08 -0.09 16 10 C 0.17 7.99 5.57 86.38 0.48 8.47 16 11 N -0.67 -28.02 5.37 -465.35 -2.50 -30.52 16 12 C 0.55 22.18 7.82 86.97 0.68 22.86 16 13 O -0.57 -25.22 16.41 -3.64 -0.06 -25.28 16 14 C 0.12 4.05 6.79 42.04 0.29 4.33 16 15 C -0.17 -4.32 9.72 22.75 0.22 -4.10 16 16 C 0.17 3.24 11.30 84.81 0.96 4.19 16 17 N -0.50 -12.25 9.43 -189.20 -1.78 -14.03 16 18 C 0.35 10.04 7.55 137.58 1.04 11.08 16 19 C -0.07 -1.89 5.88 -20.05 -0.12 -2.01 16 20 C -0.09 -2.32 9.56 22.49 0.22 -2.11 16 21 C -0.14 -2.74 10.03 22.24 0.22 -2.51 16 22 C -0.09 -1.47 10.04 22.31 0.22 -1.24 16 23 C -0.13 -2.00 10.03 22.24 0.22 -1.77 16 24 C -0.08 -1.55 9.56 22.49 0.22 -1.33 16 25 N -0.50 -16.57 8.72 -178.36 -1.56 -18.13 16 26 C -0.18 -7.22 9.94 30.62 0.30 -6.92 16 27 C -0.15 -6.77 9.26 30.62 0.28 -6.48 16 28 H 0.26 14.26 8.32 -92.71 -0.77 13.49 16 29 H 0.04 1.99 8.09 -2.39 -0.02 1.98 16 30 H 0.05 2.17 8.11 -2.39 -0.02 2.15 16 31 H 0.41 16.78 7.64 -92.71 -0.71 16.07 16 32 H 0.17 3.77 7.74 -2.91 -0.02 3.75 16 33 H 0.23 1.88 8.06 -2.91 -0.02 1.85 16 34 H 0.12 3.53 7.51 -2.91 -0.02 3.51 16 35 H 0.14 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 37 H 0.16 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.14 2.59 7.51 -2.91 -0.02 2.57 16 39 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 40 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 41 H 0.06 3.22 8.14 -2.39 -0.02 3.20 16 42 H 0.07 3.17 8.14 -2.39 -0.02 3.15 16 Total: -1.00 -67.22 369.41 2.57 -64.64 By element: Atomic # 1 Polarization: 30.28 SS G_CDS: 0.34 Total: 30.62 kcal Atomic # 6 Polarization: -7.32 SS G_CDS: 5.83 Total: -1.49 kcal Atomic # 7 Polarization: -108.18 SS G_CDS: -5.56 Total: -113.75 kcal Atomic # 8 Polarization: -25.22 SS G_CDS: -0.06 Total: -25.28 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -67.22 2.57 -64.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772087417.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.152 kcal (2) G-P(sol) polarization free energy of solvation -67.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds