Wall clock time and date at job start Tue Mar 31 2020 15:43:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46715 * 2 1 4 4 C 1.53002 * 109.47168 * 120.00173 * 2 1 3 5 5 C 1.50697 * 109.47319 * 294.99829 * 4 2 1 6 6 O 1.21287 * 119.99819 * 0.02562 * 5 4 2 7 7 N 1.34770 * 120.00039 * 179.97438 * 5 4 2 8 8 C 1.46501 * 120.00185 * 0.02562 * 7 5 4 9 9 C 1.46506 * 119.99921 * 180.02562 * 7 5 4 10 10 H 1.08998 * 109.46747 * 0.02562 * 9 7 5 11 11 C 1.52999 * 109.47141 * 240.00328 * 9 7 5 12 12 C 1.50697 * 109.46807 * 120.00226 * 9 7 5 13 13 H 1.07997 * 120.00315 * 0.02562 * 12 9 7 14 14 C 1.37877 * 119.99804 * 179.97438 * 12 9 7 15 15 N 1.31519 * 120.00109 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 120.00087 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47148 * 60.00191 * 16 14 12 18 18 H 1.48493 * 109.47233 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47119 * 300.00090 * 16 14 12 20 20 C 1.53005 * 109.47039 * 240.00218 * 2 1 3 21 21 C 1.50697 * 109.46832 * 64.99779 * 20 2 1 22 22 C 1.38247 * 119.98676 * 90.00295 * 21 20 2 23 23 C 1.38216 * 120.01497 * 179.97438 * 22 21 20 24 24 C 1.38357 * 119.98603 * 0.02562 * 23 22 21 25 25 Cl 1.73599 * 120.01134 * 180.02562 * 24 23 22 26 26 C 1.38347 * 119.97107 * 0.28224 * 24 23 22 27 27 C 1.38219 * 119.98927 * 359.42057 * 26 24 23 28 28 H 1.09009 * 109.47048 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47083 * 299.99186 * 1 2 3 30 30 H 1.08999 * 109.47725 * 59.99881 * 1 2 3 31 31 H 1.09005 * 109.46930 * 55.00359 * 4 2 1 32 32 H 1.09000 * 109.46856 * 174.99923 * 4 2 1 33 33 H 1.09003 * 109.47161 * 89.99328 * 8 7 5 34 34 H 1.09003 * 109.46943 * 209.99826 * 8 7 5 35 35 H 1.09005 * 109.46692 * 329.99773 * 8 7 5 36 36 H 1.08998 * 109.47256 * 180.02562 * 11 9 7 37 37 H 1.09004 * 109.47010 * 300.00035 * 11 9 7 38 38 H 1.09004 * 109.47014 * 59.99902 * 11 9 7 39 39 H 0.97002 * 119.99771 * 179.97438 * 15 14 12 40 40 H 1.08996 * 109.47247 * 304.99487 * 20 2 1 41 41 H 1.09004 * 109.46969 * 184.99724 * 20 2 1 42 42 H 1.08003 * 119.99321 * 359.97223 * 22 21 20 43 43 H 1.08003 * 120.00776 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.00645 * 179.69150 * 26 24 23 45 45 H 1.07997 * 119.99421 * 180.29781 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 8 1.0110 1.0869 2.3634 7 7 1.9845 -0.3921 3.7001 8 6 2.7455 -1.6364 3.8369 9 6 1.5965 0.3642 4.8934 10 1 1.0407 1.2532 4.5952 11 6 2.8512 0.7811 5.6633 12 6 0.7296 -0.4978 5.7745 13 1 0.4918 -1.5080 5.4758 14 6 0.2409 0.0030 6.9625 15 7 0.5309 1.2331 7.3265 16 14 -0.8331 -1.0657 8.0551 17 1 -0.0760 -2.2770 8.4609 18 1 -1.2265 -0.2992 9.2645 19 1 -2.0512 -1.4704 7.3083 20 6 2.0400 -0.7212 -1.2493 21 6 1.6412 0.0571 -2.4766 22 6 2.4816 1.0331 -2.9790 23 6 2.1167 1.7470 -4.1049 24 6 0.9098 1.4850 -4.7288 25 17 0.4511 2.3808 -6.1433 26 6 0.0664 0.5126 -4.2217 27 6 0.4352 -0.2049 -3.0993 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6054 -1.7199 1.2951 32 1 3.1263 -0.7995 1.2055 33 1 3.8124 -1.4137 3.8195 34 1 2.4899 -2.1166 4.7815 35 1 2.5004 -2.3048 3.0115 36 1 2.5625 1.3434 6.5513 37 1 3.4068 -0.1081 5.9614 38 1 3.4783 1.4046 5.0259 39 1 0.1867 1.5855 8.1622 40 1 1.6055 -1.7198 -1.2952 41 1 3.1263 -0.7994 -1.2057 42 1 3.4234 1.2378 -2.4917 43 1 2.7731 2.5097 -4.4971 44 1 -0.8780 0.3111 -4.7053 45 1 -0.2210 -0.9673 -2.7063 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000092895571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:54 Heat of formation + Delta-G solvation = -38.034324 kcal Electronic energy + Delta-G solvation = -24653.151230 eV Core-core repulsion = 21081.690758 eV Total energy + Delta-G solvation = -3571.460472 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.91039 -39.12497 -36.90532 -35.92711 -34.95173 -32.86773 -31.42315 -31.29893 -29.60542 -27.24328 -26.65386 -25.97994 -25.20644 -23.08332 -22.28363 -21.07915 -19.85289 -18.18589 -17.32119 -16.60846 -16.14562 -15.89968 -15.63184 -15.21798 -15.03225 -14.36403 -14.14057 -13.93301 -13.72233 -13.67207 -13.26435 -12.86683 -12.56143 -12.46977 -12.23355 -11.96081 -11.69026 -11.65140 -11.55971 -11.50052 -11.44459 -11.05286 -11.03416 -10.89300 -10.80938 -10.69826 -10.61740 -10.51959 -10.22809 -10.16163 -9.25097 -9.18689 -8.85007 -8.68872 -8.41560 -7.55499 -6.07159 -4.15276 0.91849 1.06662 1.90403 3.26952 3.32437 3.33231 3.38445 3.44596 3.99375 4.39242 4.51360 4.57531 4.65904 4.92697 5.00171 5.10647 5.16324 5.20611 5.23740 5.42670 5.50122 5.55047 5.64706 5.72054 5.73012 5.83254 5.88176 5.99024 5.99966 6.01526 6.07396 6.23100 6.35646 6.37167 6.51243 6.59066 6.73247 6.76890 6.84330 7.07823 7.45027 7.55267 7.72623 8.02631 8.21185 8.56885 8.84035 9.10892 9.51288 10.98005 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025640 B = 0.002200 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.783879 B =12723.870298 C =12933.612156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.067 4.067 3 H 0.079 0.921 4 C -0.136 4.136 5 C 0.502 3.498 6 O -0.551 6.551 7 N -0.595 5.595 8 C 0.084 3.916 9 C 0.257 3.743 10 H 0.063 0.937 11 C -0.146 4.146 12 C -0.526 4.526 13 H 0.058 0.942 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.898 3.102 17 H -0.277 1.277 18 H -0.286 1.286 19 H -0.277 1.277 20 C -0.081 4.081 21 C -0.065 4.065 22 C -0.105 4.105 23 C -0.109 4.109 24 C -0.042 4.042 25 Cl -0.079 7.079 26 C -0.110 4.110 27 C -0.102 4.102 28 H 0.045 0.955 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.041 0.959 34 H 0.079 0.921 35 H 0.053 0.947 36 H 0.092 0.908 37 H 0.028 0.972 38 H 0.010 0.990 39 H 0.264 0.736 40 H 0.075 0.925 41 H 0.074 0.926 42 H 0.132 0.868 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.791 -4.687 -21.698 22.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.086 4.086 3 H 0.097 0.903 4 C -0.176 4.176 5 C 0.290 3.710 6 O -0.430 6.430 7 N -0.327 5.327 8 C -0.060 4.060 9 C 0.157 3.843 10 H 0.081 0.919 11 C -0.204 4.204 12 C -0.564 4.564 13 H 0.076 0.924 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.726 3.274 17 H -0.203 1.203 18 H -0.212 1.212 19 H -0.203 1.203 20 C -0.118 4.118 21 C -0.065 4.065 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.069 4.069 25 Cl -0.050 7.050 26 C -0.129 4.129 27 C -0.120 4.120 28 H 0.064 0.936 29 H 0.100 0.900 30 H 0.069 0.931 31 H 0.105 0.895 32 H 0.103 0.897 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.111 0.889 37 H 0.048 0.952 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.150 0.850 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 4.387 -3.929 -21.689 22.474 hybrid contribution -0.545 -0.588 0.577 0.988 sum 3.842 -4.517 -21.112 21.929 Atomic orbital electron populations 1.22022 0.94573 1.01226 1.03386 1.20821 0.96954 0.99733 0.91076 0.90296 1.21770 1.02038 1.00220 0.93596 1.20395 0.80110 0.85922 0.84617 1.90614 1.40834 1.25261 1.86280 1.48261 1.53329 1.23868 1.07196 1.21586 0.94827 0.86855 1.02743 1.18908 0.92742 0.92628 0.80012 0.91947 1.22077 0.97069 0.99298 1.01973 1.21279 1.30935 0.99749 1.04461 0.92374 1.24900 0.96204 0.95115 0.97605 1.69874 1.44810 1.14626 1.23263 0.86562 0.80838 0.80224 0.79787 1.20258 1.21175 1.20269 1.20784 1.01325 0.98360 0.91316 1.20025 0.94144 0.96216 0.96113 1.21057 1.00194 0.95552 0.95533 1.21037 0.95286 1.00360 0.96077 1.20911 0.96728 0.97529 0.91727 1.98364 1.92436 1.74579 1.39610 1.21043 0.99489 0.95440 0.96886 1.21074 0.96326 0.99862 0.94754 0.93608 0.90005 0.93060 0.89491 0.89717 0.94027 0.90234 0.92820 0.88910 0.95249 0.97103 0.92645 0.90647 0.90711 0.85039 0.85106 0.85115 0.84998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.15 8.50 37.16 0.32 -1.83 16 2 C -0.07 -0.85 2.03 -90.62 -0.18 -1.03 16 3 H 0.08 1.15 7.96 -51.93 -0.41 0.73 16 4 C -0.14 -1.84 3.73 -27.88 -0.10 -1.94 16 5 C 0.50 9.90 7.39 -10.99 -0.08 9.82 16 6 O -0.55 -12.98 13.29 5.55 0.07 -12.91 16 7 N -0.60 -12.39 2.75 -175.26 -0.48 -12.88 16 8 C 0.08 1.36 9.24 59.85 0.55 1.91 16 9 C 0.26 6.53 2.64 -69.08 -0.18 6.35 16 10 H 0.06 1.85 6.90 -51.93 -0.36 1.49 16 11 C -0.15 -3.48 8.97 37.16 0.33 -3.15 16 12 C -0.53 -14.08 7.99 -34.44 -0.28 -14.36 16 13 H 0.06 1.53 7.33 -52.49 -0.38 1.14 16 14 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 15 N -0.89 -25.09 11.32 55.43 0.63 -24.47 16 16 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 17 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 20 C -0.08 -0.75 4.84 -27.88 -0.13 -0.88 16 21 C -0.06 -0.63 4.71 -104.62 -0.49 -1.12 16 22 C -0.11 -0.99 9.70 -39.59 -0.38 -1.38 16 23 C -0.11 -1.03 9.83 -39.55 -0.39 -1.42 16 24 C -0.04 -0.42 6.32 -39.50 -0.25 -0.67 16 25 Cl -0.08 -0.74 28.96 -51.86 -1.50 -2.24 16 26 C -0.11 -1.04 9.83 -39.55 -0.39 -1.42 16 27 C -0.10 -0.96 7.96 -39.59 -0.32 -1.27 16 28 H 0.04 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.08 1.46 5.95 -51.93 -0.31 1.15 16 30 H 0.05 0.65 6.27 -51.93 -0.33 0.33 16 31 H 0.09 1.04 7.40 -51.93 -0.38 0.66 16 32 H 0.08 0.96 8.11 -51.93 -0.42 0.54 16 33 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.39 7.02 -51.93 -0.36 1.03 16 35 H 0.05 0.69 6.44 -51.93 -0.33 0.36 16 36 H 0.09 2.44 6.07 -51.93 -0.32 2.12 16 37 H 0.03 0.64 7.67 -51.93 -0.40 0.25 16 38 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 39 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 40 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 41 H 0.07 0.60 8.09 -51.93 -0.42 0.18 16 42 H 0.13 1.04 8.06 -52.48 -0.42 0.61 16 43 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 44 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 45 H 0.13 1.06 8.04 -52.49 -0.42 0.64 16 LS Contribution 374.38 15.07 5.64 5.64 Total: -1.00 -30.69 374.38 -9.68 -40.36 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -6.94 Total: 1.33 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -2.07 Total: -10.75 kcal Atomic # 7 Polarization: -37.49 SS G_CDS: 0.14 Total: -37.34 kcal Atomic # 8 Polarization: -12.98 SS G_CDS: 0.07 Total: -12.91 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -1.50 Total: -2.24 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.69 -9.68 -40.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092895571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.328 kcal (2) G-P(sol) polarization free energy of solvation -30.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds