Wall clock time and date at job start Tue Mar 31 2020 15:43:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.46715 * 2 1 4 4 C 1.53002 * 109.47168 * 120.00173 * 2 1 3 5 5 C 1.50697 * 109.47319 * 294.99829 * 4 2 1 6 6 O 1.21287 * 119.99819 * 0.02562 * 5 4 2 7 7 N 1.34770 * 120.00039 * 179.97438 * 5 4 2 8 8 C 1.46501 * 120.00185 * 0.02562 * 7 5 4 9 9 C 1.46506 * 119.99921 * 180.02562 * 7 5 4 10 10 H 1.08998 * 109.46747 * 0.02562 * 9 7 5 11 11 C 1.52999 * 109.47141 * 240.00328 * 9 7 5 12 12 C 1.50697 * 109.46807 * 120.00226 * 9 7 5 13 13 H 1.07997 * 120.00315 * 0.02562 * 12 9 7 14 14 C 1.37877 * 119.99804 * 179.97438 * 12 9 7 15 15 N 1.31519 * 120.00109 * 0.02562 * 14 12 9 16 16 Si 1.86804 * 120.00087 * 180.02562 * 14 12 9 17 17 H 1.48494 * 109.47148 * 60.00191 * 16 14 12 18 18 H 1.48493 * 109.47233 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47119 * 300.00090 * 16 14 12 20 20 C 1.53005 * 109.47039 * 240.00218 * 2 1 3 21 21 C 1.50697 * 109.46832 * 64.99779 * 20 2 1 22 22 C 1.38247 * 119.98676 * 90.00295 * 21 20 2 23 23 C 1.38216 * 120.01497 * 179.97438 * 22 21 20 24 24 C 1.38357 * 119.98603 * 0.02562 * 23 22 21 25 25 Cl 1.73599 * 120.01134 * 180.02562 * 24 23 22 26 26 C 1.38347 * 119.97107 * 0.28224 * 24 23 22 27 27 C 1.38219 * 119.98927 * 359.42057 * 26 24 23 28 28 H 1.09009 * 109.47048 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47083 * 299.99186 * 1 2 3 30 30 H 1.08999 * 109.47725 * 59.99881 * 1 2 3 31 31 H 1.09005 * 109.46930 * 55.00359 * 4 2 1 32 32 H 1.09000 * 109.46856 * 174.99923 * 4 2 1 33 33 H 1.09003 * 109.47161 * 89.99328 * 8 7 5 34 34 H 1.09003 * 109.46943 * 209.99826 * 8 7 5 35 35 H 1.09005 * 109.46692 * 329.99773 * 8 7 5 36 36 H 1.08998 * 109.47256 * 180.02562 * 11 9 7 37 37 H 1.09004 * 109.47010 * 300.00035 * 11 9 7 38 38 H 1.09004 * 109.47014 * 59.99902 * 11 9 7 39 39 H 0.97002 * 119.99771 * 179.97438 * 15 14 12 40 40 H 1.08996 * 109.47247 * 304.99487 * 20 2 1 41 41 H 1.09004 * 109.46969 * 184.99724 * 20 2 1 42 42 H 1.08003 * 119.99321 * 359.97223 * 22 21 20 43 43 H 1.08003 * 120.00776 * 179.97438 * 23 22 21 44 44 H 1.08000 * 120.00645 * 179.69150 * 26 24 23 45 45 H 1.07997 * 119.99421 * 180.29781 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 8 1.0110 1.0869 2.3634 7 7 1.9845 -0.3921 3.7001 8 6 2.7455 -1.6364 3.8369 9 6 1.5965 0.3642 4.8934 10 1 1.0407 1.2532 4.5952 11 6 2.8512 0.7811 5.6633 12 6 0.7296 -0.4978 5.7745 13 1 0.4918 -1.5080 5.4758 14 6 0.2409 0.0030 6.9625 15 7 0.5309 1.2331 7.3265 16 14 -0.8331 -1.0657 8.0551 17 1 -0.0760 -2.2770 8.4609 18 1 -1.2265 -0.2992 9.2645 19 1 -2.0512 -1.4704 7.3083 20 6 2.0400 -0.7212 -1.2493 21 6 1.6412 0.0571 -2.4766 22 6 2.4816 1.0331 -2.9790 23 6 2.1167 1.7470 -4.1049 24 6 0.9098 1.4850 -4.7288 25 17 0.4511 2.3808 -6.1433 26 6 0.0664 0.5126 -4.2217 27 6 0.4352 -0.2049 -3.0993 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6054 -1.7199 1.2951 32 1 3.1263 -0.7995 1.2055 33 1 3.8124 -1.4137 3.8195 34 1 2.4899 -2.1166 4.7815 35 1 2.5004 -2.3048 3.0115 36 1 2.5625 1.3434 6.5513 37 1 3.4068 -0.1081 5.9614 38 1 3.4783 1.4046 5.0259 39 1 0.1867 1.5855 8.1622 40 1 1.6055 -1.7198 -1.2952 41 1 3.1263 -0.7994 -1.2057 42 1 3.4234 1.2378 -2.4917 43 1 2.7731 2.5097 -4.4971 44 1 -0.8780 0.3111 -4.7053 45 1 -0.2210 -0.9673 -2.7063 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000092895571.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:43:52 Heat of formation + Delta-G solvation = -53.295690 kcal Electronic energy + Delta-G solvation = -24653.813013 eV Core-core repulsion = 21081.690758 eV Total energy + Delta-G solvation = -3572.122255 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.96046 -40.29969 -37.75692 -37.24532 -36.26809 -34.76697 -32.39590 -32.00365 -31.31170 -28.46918 -27.50069 -27.40144 -27.25701 -23.82302 -23.46077 -22.36095 -20.94605 -19.68947 -18.49553 -18.07348 -17.67808 -17.13252 -16.68144 -16.39866 -16.27644 -15.85689 -15.19066 -15.08683 -14.76272 -14.42126 -14.37776 -14.12074 -13.99399 -13.86486 -13.46571 -13.30077 -13.03862 -12.96067 -12.77339 -12.70459 -12.60033 -12.47880 -12.41742 -12.26893 -12.18280 -12.10202 -11.81511 -11.72874 -11.60264 -11.48786 -11.17342 -10.57342 -10.33345 -9.94333 -9.45315 -9.23268 -8.13186 -6.29818 0.19775 0.37618 1.18425 1.41354 1.43780 1.51104 1.94831 2.36051 2.55313 2.71486 3.14350 3.76488 3.82584 3.84491 3.99974 4.07641 4.26232 4.40705 4.42263 4.44141 4.53430 4.71051 4.74700 4.78096 4.79211 4.81413 4.82718 4.91386 4.98552 5.04193 5.09049 5.10608 5.13162 5.16822 5.30369 5.33495 5.46628 5.49891 5.57356 5.65064 5.69760 5.72490 5.91497 6.08430 6.19357 6.79101 6.95273 7.36407 7.60401 8.90683 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.025640 B = 0.002200 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1091.783879 B =12723.870298 C =12933.612156 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.062 4.062 3 H 0.053 0.947 4 C -0.122 4.122 5 C 0.489 3.511 6 O -0.602 6.602 7 N -0.606 5.606 8 C 0.080 3.920 9 C 0.261 3.739 10 H 0.005 0.995 11 C -0.131 4.131 12 C -0.536 4.536 13 H 0.062 0.938 14 C 0.012 3.988 15 N -0.919 5.919 16 Si 0.964 3.036 17 H -0.261 1.261 18 H -0.285 1.285 19 H -0.277 1.277 20 C -0.069 4.069 21 C -0.076 4.076 22 C -0.112 4.112 23 C -0.118 4.118 24 C -0.055 4.055 25 Cl -0.080 7.080 26 C -0.119 4.119 27 C -0.107 4.107 28 H 0.064 0.936 29 H 0.033 0.967 30 H 0.056 0.944 31 H 0.114 0.886 32 H 0.118 0.882 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.064 0.936 37 H 0.046 0.954 38 H 0.018 0.982 39 H 0.263 0.737 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.146 0.854 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.823 -7.575 -22.789 24.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.081 4.081 3 H 0.071 0.929 4 C -0.162 4.162 5 C 0.279 3.721 6 O -0.484 6.484 7 N -0.337 5.337 8 C -0.063 4.063 9 C 0.158 3.842 10 H 0.023 0.977 11 C -0.189 4.189 12 C -0.574 4.574 13 H 0.080 0.920 14 C -0.187 4.187 15 N -0.558 5.558 16 Si 0.789 3.211 17 H -0.186 1.186 18 H -0.211 1.211 19 H -0.203 1.203 20 C -0.106 4.106 21 C -0.076 4.076 22 C -0.130 4.130 23 C -0.137 4.137 24 C -0.082 4.082 25 Cl -0.051 7.051 26 C -0.137 4.137 27 C -0.125 4.125 28 H 0.083 0.917 29 H 0.052 0.948 30 H 0.075 0.925 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.082 0.918 34 H 0.082 0.918 35 H 0.113 0.887 36 H 0.083 0.917 37 H 0.065 0.935 38 H 0.037 0.963 39 H 0.073 0.927 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.163 0.837 43 H 0.159 0.841 44 H 0.160 0.840 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 5.448 -6.856 -22.800 24.423 hybrid contribution -0.885 0.379 0.864 1.294 sum 4.562 -6.477 -21.935 23.322 Atomic orbital electron populations 1.21947 0.95894 1.01724 1.01232 1.20745 0.95805 0.98925 0.92620 0.92873 1.21803 1.04205 1.00089 0.90066 1.21588 0.78895 0.85745 0.85883 1.90602 1.42925 1.27834 1.87065 1.48293 1.53988 1.25142 1.06283 1.21846 0.95451 0.85259 1.03699 1.18462 0.92693 0.91233 0.81789 0.97696 1.21856 0.96702 0.99657 1.00731 1.21563 1.31186 0.99936 1.04745 0.92018 1.25769 0.97522 0.96304 0.99153 1.70029 1.45869 1.16274 1.23642 0.85520 0.78956 0.78888 0.77714 1.18566 1.21098 1.20272 1.20698 1.02621 0.98468 0.88788 1.20182 0.94376 0.96524 0.96495 1.21304 1.00860 0.95368 0.95490 1.21247 0.95431 1.00739 0.96263 1.21101 0.97198 0.97912 0.91976 1.98360 1.92458 1.74631 1.39664 1.21256 0.99966 0.95370 0.97136 1.21297 0.96492 1.00096 0.94644 0.91701 0.94786 0.92520 0.86760 0.86360 0.91778 0.91792 0.88687 0.91680 0.93526 0.96311 0.92746 0.88672 0.88637 0.83670 0.84053 0.84015 0.83625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 8.50 71.98 0.61 -3.45 16 2 C -0.06 -1.44 2.03 -10.79 -0.02 -1.46 16 3 H 0.05 1.52 7.96 -2.39 -0.02 1.50 16 4 C -0.12 -2.91 3.73 29.85 0.11 -2.80 16 5 C 0.49 19.12 7.39 87.66 0.65 19.76 16 6 O -0.60 -29.75 13.29 -3.05 -0.04 -29.79 16 7 N -0.61 -24.89 2.75 -826.78 -2.28 -27.16 16 8 C 0.08 2.34 9.24 127.77 1.18 3.52 16 9 C 0.26 13.61 2.64 44.24 0.12 13.72 16 10 H 0.01 0.32 6.90 -2.39 -0.02 0.30 16 11 C -0.13 -6.36 8.97 71.98 0.65 -5.72 16 12 C -0.54 -29.08 7.99 25.60 0.20 -28.87 16 13 H 0.06 3.22 7.33 -2.91 -0.02 3.20 16 14 C 0.01 0.65 5.30 84.65 0.45 1.10 16 15 N -0.92 -53.55 11.32 21.45 0.24 -53.31 16 16 Si 0.96 43.04 29.54 68.60 2.03 45.07 16 17 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 18 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 20 C -0.07 -1.02 4.84 29.85 0.14 -0.87 16 21 C -0.08 -1.29 4.71 -19.86 -0.09 -1.39 16 22 C -0.11 -1.91 9.70 22.27 0.22 -1.70 16 23 C -0.12 -2.10 9.83 22.29 0.22 -1.88 16 24 C -0.06 -1.05 6.32 22.32 0.14 -0.90 16 25 Cl -0.08 -1.45 28.96 -2.72 -0.08 -1.53 16 26 C -0.12 -2.08 9.83 22.29 0.22 -1.86 16 27 C -0.11 -1.80 7.96 22.27 0.18 -1.62 16 28 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 29 H 0.03 1.25 5.95 -2.39 -0.01 1.23 16 30 H 0.06 1.42 6.27 -2.39 -0.01 1.40 16 31 H 0.11 2.17 7.40 -2.38 -0.02 2.15 16 32 H 0.12 2.10 8.11 -2.39 -0.02 2.08 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.06 2.09 7.02 -2.39 -0.02 2.07 16 35 H 0.09 1.98 6.44 -2.38 -0.02 1.97 16 36 H 0.06 3.53 6.07 -2.39 -0.01 3.52 16 37 H 0.05 2.04 7.67 -2.38 -0.02 2.02 16 38 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 39 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 40 H 0.09 1.09 8.09 -2.39 -0.02 1.07 16 41 H 0.10 1.07 8.09 -2.38 -0.02 1.05 16 42 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 43 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 44 H 0.14 2.05 8.06 -2.91 -0.02 2.03 16 45 H 0.15 1.96 8.04 -2.91 -0.02 1.93 16 Total: -1.00 -71.46 374.38 5.81 -65.65 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: 0.97 Total: 15.48 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 4.97 Total: -14.42 kcal Atomic # 7 Polarization: -78.44 SS G_CDS: -2.03 Total: -80.47 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.04 Total: -29.79 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 17 Polarization: -1.45 SS G_CDS: -0.08 Total: -1.53 kcal Total: -71.46 5.81 -65.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000092895571.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.353 kcal (2) G-P(sol) polarization free energy of solvation -71.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds