Wall clock time and date at job start Tue Mar 31 2020 14:37:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53004 * 109.46665 * 2 1 4 4 H 1.09000 * 109.46709 * 54.27093 * 3 2 1 5 5 C 1.50704 * 109.47191 * 174.26693 * 3 2 1 6 6 H 1.07993 * 119.99899 * 114.30589 * 5 3 2 7 7 C 1.37877 * 119.99804 * 294.31031 * 5 3 2 8 8 N 1.31515 * 120.00092 * 153.95290 * 7 5 3 9 9 Si 1.86797 * 120.00203 * 333.94809 * 7 5 3 10 10 H 1.48495 * 109.47462 * 180.02562 * 9 7 5 11 11 H 1.48508 * 109.47244 * 300.00399 * 9 7 5 12 12 H 1.48497 * 109.47273 * 60.00127 * 9 7 5 13 13 N 1.46493 * 109.47194 * 294.26752 * 3 2 1 14 14 C 1.34780 * 119.99775 * 85.00316 * 13 3 2 15 15 O 1.21273 * 120.00319 * 359.97438 * 14 13 3 16 16 C 1.50707 * 119.99771 * 179.97438 * 14 13 3 17 17 C 1.53003 * 109.47207 * 299.99799 * 16 14 13 18 18 C 1.53003 * 109.46815 * 59.99925 * 16 14 13 19 19 C 1.53001 * 109.47157 * 179.97438 * 16 14 13 20 20 C 1.50698 * 109.47278 * 180.02562 * 19 16 14 21 21 C 1.38259 * 119.99107 * 269.72763 * 20 19 16 22 22 C 1.38224 * 120.02360 * 179.76661 * 21 20 19 23 23 C 1.38240 * 120.01241 * 0.50862 * 22 21 20 24 24 C 1.38330 * 119.98499 * 359.74476 * 23 22 21 25 25 Cl 1.73606 * 120.00916 * 180.02562 * 24 23 22 26 26 C 1.38186 * 119.99292 * 90.00126 * 20 19 16 27 27 H 1.08994 * 109.47343 * 60.00014 * 1 2 3 28 28 H 1.09005 * 109.46581 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47068 * 299.99087 * 1 2 3 30 30 H 1.08993 * 109.47072 * 240.00417 * 2 1 3 31 31 H 1.08994 * 109.47343 * 119.99986 * 2 1 3 32 32 H 0.96998 * 119.99755 * 354.95732 * 8 7 5 33 33 H 0.96995 * 120.00345 * 264.99781 * 13 3 2 34 34 H 1.09001 * 109.46810 * 60.00135 * 17 16 14 35 35 H 1.08998 * 109.46910 * 179.97438 * 17 16 14 36 36 H 1.08993 * 109.47137 * 300.00137 * 17 16 14 37 37 H 1.08998 * 109.47221 * 60.00470 * 18 16 14 38 38 H 1.09007 * 109.46955 * 179.97438 * 18 16 14 39 39 H 1.08996 * 109.47134 * 299.99346 * 18 16 14 40 40 H 1.08999 * 109.47208 * 300.00622 * 19 16 14 41 41 H 1.09003 * 109.46920 * 60.00210 * 19 16 14 42 42 H 1.07998 * 119.99379 * 359.97438 * 21 20 19 43 43 H 1.07999 * 119.99614 * 180.25150 * 22 21 20 44 44 H 1.08001 * 120.00393 * 179.76476 * 23 22 21 45 45 H 1.08006 * 120.00906 * 359.96005 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5952 1.9851 0.8343 5 6 3.5403 1.4451 0.1419 6 1 4.1587 1.8024 -0.6681 7 6 4.1233 0.9912 1.3060 8 7 5.3466 0.5087 1.2840 9 14 3.1759 1.0615 2.9143 10 1 4.0186 0.5180 4.0095 11 1 2.8192 2.4708 3.2176 12 1 1.9366 0.2521 2.7946 13 7 1.6675 2.0922 -1.2591 14 6 0.4516 2.6585 -1.3913 15 8 -0.3343 2.6300 -0.4680 16 6 0.0686 3.3273 -2.6864 17 6 1.0426 4.4708 -2.9774 18 6 0.1264 2.3060 -3.8242 19 6 -1.3522 3.8834 -2.5726 20 6 -1.7354 4.5516 -3.8678 21 6 -1.4775 5.8971 -4.0541 22 6 -1.8243 6.5096 -5.2437 23 6 -2.4388 5.7794 -6.2439 24 6 -2.7017 4.4344 -6.0560 25 17 -3.4727 3.5167 -7.3119 26 6 -2.3495 3.8207 -4.8669 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5137 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 5.8116 0.4042 0.4392 33 1 2.2958 2.1148 -1.9976 34 1 2.0547 4.0742 -3.0586 35 1 0.7659 4.9542 -3.9143 36 1 1.0014 5.1983 -2.1668 37 1 -0.5675 1.4914 -3.6169 38 1 -0.1510 2.7896 -4.7609 39 1 1.1385 1.9096 -3.9055 40 1 -2.0458 3.0685 -2.3654 41 1 -1.3937 4.6108 -1.7619 42 1 -1.0019 6.4691 -3.2711 43 1 -1.6190 7.5597 -5.3902 44 1 -2.7131 6.2590 -7.1719 45 1 -2.5543 2.7705 -4.7198 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000183859543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:37:07 Heat of formation + Delta-G solvation = -62.245051 kcal Electronic energy + Delta-G solvation = -25600.522682 eV Core-core repulsion = 22028.012354 eV Total energy + Delta-G solvation = -3572.510328 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.52128 -40.24466 -37.73239 -37.18744 -36.41007 -34.47581 -33.24633 -31.99500 -31.68493 -29.08737 -28.27474 -27.73690 -24.75701 -23.99494 -23.50774 -22.49080 -21.40098 -20.60094 -19.38853 -17.78840 -17.54947 -17.28742 -16.64963 -16.34561 -16.32809 -15.77477 -15.29117 -14.91523 -14.82985 -14.58830 -14.49329 -14.43433 -14.21423 -13.91349 -13.71974 -13.46906 -13.25235 -13.02086 -12.84344 -12.65615 -12.53073 -12.46889 -12.34489 -12.27395 -12.16643 -11.90443 -11.85919 -11.77174 -11.69863 -11.56052 -11.21730 -10.48309 -10.40237 -9.80713 -9.74151 -9.57864 -8.80432 -6.39643 0.21094 0.32241 1.18107 1.46353 1.48230 1.69312 1.83887 2.42205 2.47161 2.71904 2.93538 3.62243 3.76818 3.81927 3.97650 3.99293 4.20261 4.25658 4.31702 4.36472 4.40833 4.42579 4.56378 4.60823 4.71102 4.75412 4.82025 4.86693 4.90834 4.95343 5.00431 5.09162 5.13283 5.22360 5.24907 5.27459 5.30896 5.32843 5.42265 5.55627 5.62064 5.72192 5.73507 5.88301 6.03847 6.56201 6.91389 7.28527 7.50434 8.55955 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.024700 B = 0.002859 C = 0.002778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.318774 B = 9792.602201 C =10075.498614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.128 4.128 3 C 0.256 3.744 4 H 0.020 0.980 5 C -0.624 4.624 6 H 0.041 0.959 7 C 0.007 3.993 8 N -0.917 5.917 9 Si 1.062 2.938 10 H -0.282 1.282 11 H -0.274 1.274 12 H -0.256 1.256 13 N -0.700 5.700 14 C 0.510 3.490 15 O -0.581 6.581 16 C -0.066 4.066 17 C -0.139 4.139 18 C -0.139 4.139 19 C -0.051 4.051 20 C -0.063 4.063 21 C -0.113 4.113 22 C -0.102 4.102 23 C -0.119 4.119 24 C -0.044 4.044 25 Cl -0.078 7.078 26 C -0.114 4.114 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.038 0.962 30 H 0.052 0.948 31 H 0.048 0.952 32 H 0.262 0.738 33 H 0.399 0.601 34 H 0.058 0.942 35 H 0.088 0.912 36 H 0.056 0.944 37 H 0.056 0.944 38 H 0.083 0.917 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.139 0.861 43 H 0.157 0.843 44 H 0.147 0.853 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.030 10.545 -17.005 25.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.167 4.167 3 C 0.151 3.849 4 H 0.038 0.962 5 C -0.662 4.662 6 H 0.059 0.941 7 C -0.196 4.196 8 N -0.550 5.550 9 Si 0.885 3.115 10 H -0.207 1.207 11 H -0.199 1.199 12 H -0.181 1.181 13 N -0.348 5.348 14 C 0.297 3.703 15 O -0.462 6.462 16 C -0.069 4.069 17 C -0.196 4.196 18 C -0.196 4.196 19 C -0.088 4.088 20 C -0.063 4.063 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.137 4.137 24 C -0.071 4.071 25 Cl -0.049 7.049 26 C -0.132 4.132 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.234 0.766 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.102 0.898 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.157 0.843 43 H 0.175 0.825 44 H 0.165 0.835 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.484 10.131 -14.839 24.384 hybrid contribution 0.663 -0.108 -1.873 1.990 sum -15.821 10.023 -16.712 25.101 Atomic orbital electron populations 1.21761 0.95546 1.00198 1.01441 1.22115 0.95258 0.98552 1.00753 1.18676 0.93380 0.89402 0.83478 0.96246 1.22147 0.91529 1.48623 1.03890 0.94062 1.26627 0.96714 0.91312 1.04930 1.70962 1.15075 1.38916 1.30041 0.83783 0.75795 0.78283 0.73682 1.20712 1.19929 1.18112 1.46099 1.15640 1.56195 1.16911 1.21031 0.81370 0.77950 0.89926 1.90631 1.51452 1.61040 1.43066 1.20671 0.96993 0.97045 0.92231 1.21930 0.97949 0.96726 1.03035 1.21925 1.02658 0.97768 0.97238 1.20329 0.94082 1.00166 0.94271 1.19684 0.97590 0.94258 0.94817 1.21426 0.99256 0.93914 0.98548 1.21405 0.97084 1.01251 0.92230 1.21306 0.99585 0.91740 1.01082 1.21037 1.01745 0.93334 0.90936 1.98371 1.79975 1.74369 1.52198 1.21021 0.99529 1.00696 0.91990 0.93004 0.92772 0.94290 0.92955 0.93351 0.92912 0.76600 0.92251 0.89340 0.92459 0.92496 0.89842 0.91924 0.91109 0.90676 0.84275 0.82493 0.83516 0.85096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 8.53 71.98 0.61 -4.52 16 2 C -0.13 -5.59 5.37 30.60 0.16 -5.43 16 3 C 0.26 11.95 1.84 44.25 0.08 12.03 16 4 H 0.02 1.01 6.12 -2.39 -0.01 0.99 16 5 C -0.62 -33.56 8.92 25.60 0.23 -33.33 16 6 H 0.04 2.34 7.96 -2.91 -0.02 2.32 16 7 C 0.01 0.40 5.15 84.65 0.44 0.83 16 8 N -0.92 -54.60 13.70 21.45 0.29 -54.31 16 9 Si 1.06 50.24 26.56 68.60 1.82 52.06 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.26 -11.35 6.34 99.48 0.63 -10.72 16 13 N -0.70 -26.99 4.81 -446.09 -2.15 -29.14 16 14 C 0.51 17.90 5.08 87.66 0.45 18.35 16 15 O -0.58 -24.13 13.12 -3.01 -0.04 -24.17 16 16 C -0.07 -1.65 0.64 -52.92 -0.03 -1.68 16 17 C -0.14 -3.01 7.79 71.98 0.56 -2.45 16 18 C -0.14 -3.00 7.77 71.98 0.56 -2.44 16 19 C -0.05 -1.17 3.75 29.85 0.11 -1.06 16 20 C -0.06 -1.17 4.00 -19.87 -0.08 -1.25 16 21 C -0.11 -1.74 7.90 22.27 0.18 -1.56 16 22 C -0.10 -1.27 10.05 22.27 0.22 -1.05 16 23 C -0.12 -1.66 9.83 22.29 0.22 -1.44 16 24 C -0.04 -0.75 6.32 22.32 0.14 -0.61 16 25 Cl -0.08 -1.33 28.96 -2.72 -0.08 -1.41 16 26 C -0.11 -2.09 7.66 22.29 0.17 -1.92 16 27 H 0.05 1.97 5.63 -2.39 -0.01 1.95 16 28 H 0.05 1.82 8.14 -2.38 -0.02 1.80 16 29 H 0.04 1.59 7.89 -2.39 -0.02 1.57 16 30 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.05 2.23 5.77 -2.39 -0.01 2.22 16 32 H 0.26 15.56 8.73 -92.71 -0.81 14.75 16 33 H 0.40 14.02 7.36 -92.71 -0.68 13.34 16 34 H 0.06 1.34 7.56 -2.39 -0.02 1.32 16 35 H 0.09 1.53 6.19 -2.39 -0.01 1.52 16 36 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 37 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.08 1.54 6.17 -2.38 -0.01 1.53 16 39 H 0.06 1.36 7.56 -2.39 -0.02 1.34 16 40 H 0.07 1.78 8.04 -2.39 -0.02 1.76 16 41 H 0.07 1.85 8.04 -2.39 -0.02 1.84 16 42 H 0.14 1.84 8.04 -2.91 -0.02 1.82 16 43 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 44 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 45 H 0.13 2.38 8.02 -2.91 -0.02 2.36 16 Total: -1.00 -63.84 366.10 4.06 -59.78 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.19 Total: 24.71 kcal Atomic # 6 Polarization: -31.54 SS G_CDS: 4.02 Total: -27.52 kcal Atomic # 7 Polarization: -81.59 SS G_CDS: -1.85 Total: -83.45 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -0.04 Total: -24.17 kcal Atomic # 14 Polarization: 50.24 SS G_CDS: 1.82 Total: 52.06 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -63.84 4.06 -59.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000183859543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.467 kcal (2) G-P(sol) polarization free energy of solvation -63.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds