Wall clock time and date at job start Tue Mar 31 2020 14:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50698 * 120.00092 * 2 1 4 4 N 1.46504 * 109.46969 * 125.00528 * 3 2 1 5 5 C 1.46498 * 119.99474 * 269.99954 * 4 3 2 6 6 C 1.50702 * 109.47114 * 269.99842 * 5 4 3 7 7 H 1.08001 * 119.99709 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00483 * 180.02562 * 6 5 4 9 9 N 1.31517 * 119.99826 * 359.97438 * 8 6 5 10 10 Si 1.86792 * 120.00431 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47470 * 59.99943 * 10 8 6 12 12 H 1.48505 * 109.47347 * 179.97438 * 10 8 6 13 13 H 1.48508 * 109.47098 * 299.99605 * 10 8 6 14 14 C 1.34775 * 120.00133 * 89.99717 * 4 3 2 15 15 O 1.21654 * 119.99712 * 179.97438 * 14 4 3 16 16 C 1.46745 * 120.00045 * 0.02562 * 14 4 3 17 17 C 1.34649 * 119.99888 * 180.02562 * 16 14 4 18 18 C 1.47359 * 119.99628 * 179.97438 * 17 16 14 19 19 C 1.40963 * 119.78684 * 179.97438 * 18 17 16 20 20 N 1.31137 * 120.53104 * 180.29777 * 19 18 17 21 21 C 1.33873 * 119.87542 * 359.45285 * 20 19 18 22 22 C 1.40489 * 120.95197 * 180.24630 * 21 20 19 23 23 C 1.36113 * 119.76878 * 180.29219 * 22 21 20 24 24 C 1.39439 * 121.00613 * 0.02562 * 23 22 21 25 25 C 1.36022 * 120.95923 * 359.95402 * 24 23 22 26 26 C 1.40785 * 119.70815 * 0.04462 * 25 24 23 27 27 N 1.32422 * 119.79425 * 0.02562 * 18 17 16 28 28 H 1.08000 * 119.99531 * 359.97438 * 1 2 3 29 29 H 1.07994 * 119.99803 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99531 * 180.02562 * 2 1 3 31 31 H 1.08997 * 109.46891 * 5.00076 * 3 2 1 32 32 H 1.09001 * 109.46830 * 244.99719 * 3 2 1 33 33 H 1.08995 * 109.47534 * 30.00155 * 5 4 3 34 34 H 1.08995 * 109.47225 * 150.00483 * 5 4 3 35 35 H 0.96996 * 120.00139 * 180.02562 * 9 8 6 36 36 H 1.08003 * 119.99808 * 359.97438 * 16 14 4 37 37 H 1.07993 * 119.99771 * 359.97438 * 17 16 14 38 38 H 1.08002 * 119.72982 * 0.02562 * 19 18 17 39 39 H 1.08003 * 120.11585 * 0.27147 * 22 21 20 40 40 H 1.08002 * 119.49871 * 179.97438 * 23 22 21 41 41 H 1.07996 * 119.52053 * 180.02562 * 24 23 22 42 42 H 1.08001 * 120.14669 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1314 5 6 2.5590 1.8648 2.4248 6 6 2.8444 3.3435 2.4804 7 1 3.3035 3.8369 1.6365 8 6 2.5196 4.0664 3.6086 9 7 1.9601 3.4656 4.6361 10 14 2.8728 5.8993 3.6772 11 1 2.1361 6.5867 2.5863 12 1 2.4320 6.4397 4.9884 13 1 4.3306 6.1291 3.5114 14 6 4.2498 0.8660 0.9823 15 8 5.0224 0.8886 1.9217 16 6 4.6855 0.3326 -0.3135 17 6 5.9401 -0.1333 -0.4623 18 6 6.3774 -0.6694 -1.7633 19 6 7.6919 -1.1555 -1.9143 20 7 8.0983 -1.6304 -3.0671 21 6 7.2569 -1.6653 -4.1079 22 6 7.6668 -2.1741 -5.3516 23 6 6.7932 -2.1927 -6.3953 24 6 5.4920 -1.7127 -6.2514 25 6 5.0579 -1.2128 -5.0632 26 6 5.9321 -1.1768 -3.9603 27 7 5.5334 -0.6907 -2.7835 28 1 -0.5399 0.9354 0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 1.8500 -0.9354 -0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6214 1.4025 -0.9314 33 1 1.4889 1.6965 2.5459 34 1 3.0991 1.3602 3.2259 35 1 1.7312 3.9743 5.4296 36 1 3.9996 0.3129 -1.1475 37 1 6.6257 -0.1139 0.3719 38 1 8.3712 -1.1324 -1.0750 39 1 8.6716 -2.5489 -5.4793 40 1 7.1131 -2.5844 -7.3496 41 1 4.8187 -1.7393 -7.0954 42 1 4.0471 -0.8449 -4.9663 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493821420.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:15 Heat of formation + Delta-G solvation = 77.612999 kcal Electronic energy + Delta-G solvation = -25331.640111 eV Core-core repulsion = 21664.086989 eV Total energy + Delta-G solvation = -3667.553122 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 323.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.59203 -39.17439 -37.88518 -35.76803 -35.30025 -33.50893 -33.03670 -32.06616 -30.94604 -30.20981 -27.78983 -26.07253 -25.43643 -24.62229 -23.19358 -22.54140 -21.05404 -19.86674 -18.94591 -18.62689 -17.73644 -17.08943 -16.46509 -16.33313 -15.54077 -15.35837 -15.25342 -14.77006 -14.65492 -14.36013 -14.22027 -14.06605 -13.83867 -13.02545 -12.82876 -12.45583 -12.29181 -12.18886 -12.06768 -12.02656 -11.95219 -11.73520 -11.56693 -11.27846 -11.06912 -10.90518 -10.58400 -10.19672 -10.10942 -9.66414 -9.39561 -9.18126 -9.05740 -9.00921 -8.54836 -8.43076 -7.70907 -6.04266 -4.09269 -0.22253 0.14575 1.40249 1.84820 2.46741 2.66400 3.32338 3.36662 3.39710 3.60575 3.73753 3.84022 3.86995 3.96837 4.04102 4.41280 4.46021 4.50044 4.71873 4.80536 4.90302 5.02040 5.18213 5.26961 5.29558 5.35732 5.43891 5.53116 5.59127 5.68352 5.73455 5.92027 5.99548 6.02613 6.18763 6.23028 6.34320 6.39480 6.81637 6.92729 7.03413 7.08753 7.42992 7.47782 7.51483 7.91677 8.22186 8.34839 8.86624 9.02211 9.55570 11.03792 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.017082 B = 0.002665 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.735407 B =10502.715190 C =11239.420884 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.166 4.166 3 C 0.133 3.867 4 N -0.582 5.582 5 C 0.246 3.754 6 C -0.528 4.528 7 H 0.057 0.943 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.898 3.102 11 H -0.277 1.277 12 H -0.286 1.286 13 H -0.276 1.276 14 C 0.528 3.472 15 O -0.537 6.537 16 C -0.125 4.125 17 C -0.076 4.076 18 C 0.139 3.861 19 C 0.098 3.902 20 N -0.427 5.427 21 C 0.070 3.930 22 C -0.083 4.083 23 C -0.103 4.103 24 C -0.101 4.101 25 C -0.082 4.082 26 C 0.088 3.912 27 N -0.423 5.423 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.034 0.966 34 H 0.045 0.955 35 H 0.264 0.736 36 H 0.139 0.861 37 H 0.152 0.848 38 H 0.181 0.819 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.135 0.865 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.586 -12.202 -21.891 25.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.186 4.186 3 C 0.009 3.991 4 N -0.312 5.312 5 C 0.127 3.873 6 C -0.566 4.566 7 H 0.076 0.924 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.726 3.274 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.201 1.201 14 C 0.316 3.684 15 O -0.416 6.416 16 C -0.149 4.149 17 C -0.097 4.097 18 C -0.013 4.013 19 C -0.078 4.078 20 N -0.139 5.139 21 C -0.054 4.054 22 C -0.102 4.102 23 C -0.123 4.123 24 C -0.121 4.121 25 C -0.101 4.101 26 C -0.038 4.038 27 N -0.138 5.138 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.156 0.844 37 H 0.170 0.830 38 H 0.198 0.802 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.153 0.847 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.873 -12.181 -21.416 25.328 hybrid contribution 0.028 1.009 0.116 1.016 sum 5.901 -11.172 -21.300 24.765 Atomic orbital electron populations 1.23811 0.95823 1.01741 1.00693 1.23427 0.96398 0.98973 0.99765 1.20669 0.93092 0.95473 0.89836 1.48168 1.10249 1.59014 1.13784 1.19321 0.95553 0.93818 0.78567 1.21387 1.40734 0.93216 1.01296 0.92444 1.24926 0.95027 0.98771 0.95311 1.69924 1.41909 1.36287 1.05180 0.86558 0.78857 0.84854 0.77144 1.20256 1.21177 1.20143 1.18254 0.82797 0.79468 0.87920 1.90781 1.52585 1.56553 1.41655 1.23681 0.97072 0.96068 0.98075 1.21995 0.97361 0.97474 0.92869 1.21323 0.91367 0.94863 0.93703 1.24159 0.94605 0.93089 0.95942 1.68656 1.34190 1.11943 0.99134 1.19677 0.91305 0.99773 0.94616 1.20790 1.00640 0.98494 0.90262 1.21027 0.93486 0.98676 0.99088 1.21012 0.96183 0.97321 0.97579 1.20899 0.99718 0.98752 0.90772 1.19615 0.93140 0.97927 0.93101 1.68744 1.34340 1.12168 0.98530 0.88272 0.88795 0.87735 0.89284 0.90402 0.94770 0.93706 0.92642 0.84376 0.83027 0.80232 0.84390 0.84779 0.84686 0.84111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.40 14.32 29.01 0.42 -1.99 16 2 C -0.17 -2.42 9.85 -36.03 -0.35 -2.78 16 3 C 0.13 2.20 5.56 -5.19 -0.03 2.17 16 4 N -0.58 -12.36 2.44 -177.97 -0.43 -12.79 16 5 C 0.25 6.43 5.16 -5.19 -0.03 6.40 16 6 C -0.53 -14.90 9.39 -34.44 -0.32 -15.22 16 7 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 9 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 10 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 14 C 0.53 10.99 7.61 -12.82 -0.10 10.90 16 15 O -0.54 -13.27 15.81 5.23 0.08 -13.18 16 16 C -0.13 -1.99 8.75 -37.42 -0.33 -2.31 16 17 C -0.08 -1.06 9.45 -37.14 -0.35 -1.41 16 18 C 0.14 1.79 6.71 -82.87 -0.56 1.23 16 19 C 0.10 1.11 10.95 -16.82 -0.18 0.92 16 20 N -0.43 -5.19 10.45 -10.46 -0.11 -5.30 16 21 C 0.07 0.82 6.59 -84.70 -0.56 0.26 16 22 C -0.08 -0.72 9.98 -39.50 -0.39 -1.12 16 23 C -0.10 -0.68 9.95 -39.90 -0.40 -1.08 16 24 C -0.10 -0.69 9.95 -39.93 -0.40 -1.08 16 25 C -0.08 -0.76 9.99 -39.42 -0.39 -1.15 16 26 C 0.09 1.07 6.59 -84.79 -0.56 0.51 16 27 N -0.42 -5.66 9.42 -7.50 -0.07 -5.74 16 28 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 29 H 0.09 1.07 8.06 -52.49 -0.42 0.65 16 30 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 31 H 0.09 1.51 7.72 -51.93 -0.40 1.11 16 32 H 0.08 1.11 6.09 -51.93 -0.32 0.79 16 33 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 34 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.14 1.98 5.57 -52.48 -0.29 1.69 16 37 H 0.15 2.02 7.52 -52.49 -0.39 1.63 16 38 H 0.18 1.43 8.06 -52.49 -0.42 1.01 16 39 H 0.14 0.98 8.06 -52.48 -0.42 0.56 16 40 H 0.13 0.48 8.06 -52.49 -0.42 0.06 16 41 H 0.14 0.53 8.06 -52.49 -0.42 0.11 16 42 H 0.14 1.13 8.06 -52.49 -0.42 0.71 16 LS Contribution 371.29 15.07 5.60 5.60 Total: -1.00 -34.49 371.29 -8.98 -43.47 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -5.13 Total: 1.00 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -4.63 Total: -4.09 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.12 Total: -49.61 kcal Atomic # 8 Polarization: -13.27 SS G_CDS: 0.08 Total: -13.18 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.49 -8.98 -43.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493821420.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.083 kcal (2) G-P(sol) polarization free energy of solvation -34.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds