Wall clock time and date at job start Tue Mar 31 2020 14:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.47453 * 2 1 4 4 N 1.46492 * 109.47233 * 180.02562 * 3 2 1 5 5 C 1.36869 * 120.00217 * 269.11273 * 4 3 2 6 6 H 1.07997 * 120.00411 * 136.83480 * 5 4 3 7 7 C 1.39049 * 119.99685 * 316.82662 * 5 4 3 8 8 N 1.31362 * 120.00476 * 343.65704 * 7 5 4 9 9 Si 1.86804 * 119.99855 * 163.65582 * 7 5 4 10 10 H 1.48495 * 109.46948 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46944 * 120.00222 * 9 7 5 12 12 H 1.48496 * 109.47298 * 240.00148 * 9 7 5 13 13 C 1.34775 * 119.99824 * 89.10843 * 4 3 2 14 14 O 1.21588 * 120.00182 * 4.56800 * 13 4 3 15 15 C 1.47733 * 119.99882 * 184.56076 * 13 4 3 16 16 C 1.39671 * 120.14088 * 145.25011 * 15 13 4 17 17 C 1.37920 * 119.87208 * 180.29564 * 16 15 13 18 18 C 1.38378 * 120.16355 * 359.45162 * 17 16 15 19 19 C 1.50704 * 119.85052 * 180.30303 * 18 17 16 20 20 C 1.52995 * 109.47321 * 359.97438 * 19 18 17 21 21 C 1.52995 * 109.47080 * 120.00148 * 19 18 17 22 22 C 1.53007 * 109.46544 * 239.99919 * 19 18 17 23 23 C 1.38463 * 120.29386 * 0.27383 * 18 17 16 24 24 Cl 1.73600 * 119.93818 * 180.02562 * 23 18 17 25 25 C 1.38074 * 120.12463 * 0.02562 * 23 18 17 26 26 H 1.09000 * 109.47364 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.47078 * 299.99616 * 1 2 3 28 28 H 1.08998 * 109.47288 * 59.99521 * 1 2 3 29 29 H 1.09004 * 109.46614 * 240.00540 * 2 1 3 30 30 H 1.08998 * 109.47288 * 120.00479 * 2 1 3 31 31 H 1.09000 * 109.46665 * 60.00131 * 3 2 1 32 32 H 1.08998 * 109.47264 * 300.00493 * 3 2 1 33 33 H 0.97000 * 120.00735 * 179.97438 * 8 7 5 34 34 H 1.08005 * 120.06270 * 0.04233 * 16 15 13 35 35 H 1.07995 * 119.91900 * 179.73063 * 17 16 15 36 36 H 1.09002 * 109.47314 * 60.00222 * 20 19 18 37 37 H 1.09001 * 109.47366 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47060 * 300.00327 * 20 19 18 39 39 H 1.08996 * 109.47740 * 59.99830 * 21 19 18 40 40 H 1.09008 * 109.47083 * 179.97438 * 21 19 18 41 41 H 1.08994 * 109.47040 * 299.99162 * 21 19 18 42 42 H 1.09000 * 109.47495 * 59.99883 * 22 19 18 43 43 H 1.09001 * 109.46744 * 180.02562 * 22 19 18 44 44 H 1.09004 * 109.47149 * 299.99775 * 22 19 18 45 45 H 1.08000 * 120.08660 * 179.97438 * 25 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1899 1.4606 1.1842 6 1 5.0507 0.8228 1.3203 7 6 3.7774 2.3004 2.2128 8 7 2.9545 3.2928 1.9606 9 14 4.3934 2.0175 3.9535 10 1 5.3033 0.8440 3.9719 11 1 5.1284 3.2205 4.4201 12 1 3.2388 1.7633 4.8521 13 6 4.1783 1.4244 -1.1680 14 8 3.5728 1.4921 -2.2202 15 6 5.6521 1.3226 -1.1691 16 6 6.3053 0.6118 -2.1785 17 6 7.6811 0.5152 -2.1707 18 6 8.4156 1.1300 -1.1721 19 6 9.9191 1.0255 -1.1743 20 6 10.3708 0.1934 -2.3761 21 6 10.5274 2.4264 -1.2656 22 6 10.3852 0.3503 0.1172 23 6 7.7756 1.8411 -0.1713 24 17 8.7062 2.6094 1.0767 25 6 6.3984 1.9405 -0.1639 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 1.8932 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9564 -0.8899 33 1 2.6664 3.8785 2.6782 34 1 5.7338 0.1353 -2.9614 35 1 8.1866 -0.0379 -2.9484 36 1 10.0387 0.6741 -3.2963 37 1 11.4581 0.1175 -2.3774 38 1 9.9373 -0.8045 -2.3105 39 1 10.2057 3.0189 -0.4093 40 1 11.6149 2.3508 -1.2668 41 1 10.1954 2.9073 -2.1856 42 1 9.9517 -0.6477 0.1823 43 1 11.4726 0.2751 0.1158 44 1 10.0633 0.9428 0.9736 45 1 5.8998 2.4950 0.6173 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000570868315.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:49:51 Heat of formation + Delta-G solvation = -39.076546 kcal Electronic energy + Delta-G solvation = -26049.199986 eV Core-core repulsion = 22477.694319 eV Total energy + Delta-G solvation = -3571.505666 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 323.139 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.35922 -40.11025 -37.46829 -37.18569 -36.94224 -34.63263 -33.28066 -31.81045 -31.05181 -28.29312 -28.07100 -27.63569 -26.76414 -24.44267 -23.27020 -22.42116 -21.27910 -20.28867 -19.53498 -17.91322 -17.22624 -16.85756 -16.41514 -16.21396 -15.87480 -15.55857 -15.42734 -15.10514 -14.96207 -14.68546 -14.64761 -14.53736 -14.08228 -13.73922 -13.29389 -13.23067 -13.03385 -12.88260 -12.74362 -12.72470 -12.65536 -12.64085 -12.47103 -12.26789 -12.03719 -11.99704 -11.85888 -11.72125 -11.62892 -11.53681 -11.08540 -10.84068 -10.45577 -9.75628 -9.59593 -9.40832 -8.34817 -6.14569 -0.02491 0.32782 1.15647 1.37654 1.43771 1.55115 1.97968 2.26040 2.71897 2.87180 3.09013 3.58493 3.81474 4.06199 4.13187 4.16451 4.20869 4.30113 4.31808 4.38368 4.49221 4.56542 4.72214 4.76870 4.85322 4.85568 4.93030 4.97992 4.98293 5.05836 5.06974 5.08723 5.10532 5.19963 5.27577 5.32569 5.34244 5.40381 5.42703 5.50378 5.51793 5.57176 5.63661 5.84986 5.99787 6.36378 7.03732 7.46866 7.92095 8.67719 Molecular weight = 323.14amu Principal moments of inertia in cm(-1) A = 0.013822 B = 0.004964 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2025.238120 B = 5639.591934 C = 7080.854547 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.124 4.124 3 C 0.117 3.883 4 N -0.437 5.437 5 C -0.347 4.347 6 H 0.092 0.908 7 C 0.015 3.985 8 N -0.887 5.887 9 Si 0.963 3.037 10 H -0.257 1.257 11 H -0.276 1.276 12 H -0.272 1.272 13 C 0.497 3.503 14 O -0.632 6.632 15 C -0.119 4.119 16 C -0.077 4.077 17 C -0.116 4.116 18 C -0.047 4.047 19 C -0.027 4.027 20 C -0.141 4.141 21 C -0.155 4.155 22 C -0.155 4.155 23 C -0.055 4.055 24 Cl -0.058 7.058 25 C -0.068 4.068 26 H 0.073 0.927 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.087 0.913 32 H 0.035 0.965 33 H 0.274 0.726 34 H 0.131 0.869 35 H 0.170 0.830 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.077 0.923 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.960 -5.758 -1.998 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.162 4.162 3 C -0.006 4.006 4 N -0.153 5.153 5 C -0.475 4.475 6 H 0.109 0.891 7 C -0.190 4.190 8 N -0.523 5.523 9 Si 0.787 3.213 10 H -0.181 1.181 11 H -0.202 1.202 12 H -0.198 1.198 13 C 0.287 3.713 14 O -0.521 6.521 15 C -0.122 4.122 16 C -0.096 4.096 17 C -0.134 4.134 18 C -0.048 4.048 19 C -0.027 4.027 20 C -0.198 4.198 21 C -0.212 4.212 22 C -0.212 4.212 23 C -0.081 4.081 24 Cl -0.028 7.028 25 C -0.087 4.087 26 H 0.092 0.908 27 H 0.075 0.925 28 H 0.071 0.929 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.105 0.895 32 H 0.054 0.946 33 H 0.084 0.916 34 H 0.149 0.851 35 H 0.187 0.813 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.095 0.905 44 H 0.080 0.920 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 12.597 -5.487 -2.240 13.921 hybrid contribution -0.393 0.443 1.033 1.191 sum 12.204 -5.043 -1.207 13.260 Atomic orbital electron populations 1.21611 0.93464 1.02460 1.01805 1.21729 0.97375 0.96497 1.00633 1.21397 0.81142 0.96552 1.01541 1.43516 1.05330 1.61740 1.04667 1.19575 1.14499 1.22874 0.90555 0.89078 1.26100 0.96645 0.93046 1.03187 1.69977 1.33546 1.14353 1.34424 0.85309 0.78759 0.79023 0.78258 1.18059 1.20161 1.19755 1.18889 0.87929 0.80403 0.84039 1.90566 1.70767 1.58024 1.32761 1.19861 0.92853 1.02099 0.97352 1.21416 0.95351 0.96459 0.96366 1.21275 0.91998 1.00737 0.99380 1.20166 0.97202 0.94923 0.92499 1.19584 0.87699 0.97443 0.97933 1.21966 1.02255 0.99444 0.96145 1.22162 1.01381 0.95044 1.02616 1.22166 1.01982 1.00382 0.96672 1.20722 0.91088 1.02452 0.93852 1.98275 1.72081 1.79954 1.52526 1.21841 0.91881 0.97429 0.97600 0.90778 0.92473 0.92898 0.94091 0.92353 0.89461 0.94617 0.91565 0.85126 0.81293 0.91771 0.90593 0.91715 0.92010 0.90441 0.92988 0.92928 0.90458 0.92028 0.83879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.36 9.91 71.98 0.71 -3.65 16 2 C -0.12 -5.04 6.26 30.59 0.19 -4.85 16 3 C 0.12 5.72 5.01 86.38 0.43 6.15 16 4 N -0.44 -22.56 2.47 -638.96 -1.58 -24.14 16 5 C -0.35 -17.41 6.07 84.10 0.51 -16.90 16 6 H 0.09 4.51 6.46 -2.91 -0.02 4.49 16 7 C 0.01 0.72 4.96 84.96 0.42 1.14 16 8 N -0.89 -46.49 11.57 21.68 0.25 -46.24 16 9 Si 0.96 39.03 29.58 68.60 2.03 41.06 16 10 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 11 H -0.28 -11.09 7.11 99.48 0.71 -10.39 16 12 H -0.27 -10.78 7.11 99.48 0.71 -10.07 16 13 C 0.50 25.76 7.37 86.75 0.64 26.40 16 14 O -0.63 -35.48 16.39 -3.99 -0.07 -35.55 16 15 C -0.12 -5.23 5.47 -20.09 -0.11 -5.34 16 16 C -0.08 -2.78 9.61 22.54 0.22 -2.56 16 17 C -0.12 -3.30 8.96 22.23 0.20 -3.10 16 18 C -0.05 -1.34 4.77 -19.78 -0.09 -1.44 16 19 C -0.03 -0.57 0.75 -52.93 -0.04 -0.61 16 20 C -0.14 -2.28 7.13 71.98 0.51 -1.77 16 21 C -0.15 -3.23 8.22 71.98 0.59 -2.64 16 22 C -0.15 -3.23 8.22 71.98 0.59 -2.64 16 23 C -0.05 -1.88 6.02 22.28 0.13 -1.75 16 24 Cl -0.06 -1.76 22.46 -2.72 -0.06 -1.83 16 25 C -0.07 -2.86 7.57 22.56 0.17 -2.69 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.09 4.47 5.77 -2.39 -0.01 4.46 16 32 H 0.04 1.85 7.39 -2.39 -0.02 1.83 16 33 H 0.27 13.50 8.31 -92.71 -0.77 12.73 16 34 H 0.13 4.58 8.00 -2.91 -0.02 4.56 16 35 H 0.17 3.49 5.87 -2.91 -0.02 3.47 16 36 H 0.06 0.99 7.50 -2.39 -0.02 0.98 16 37 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 0.99 7.51 -2.39 -0.02 0.98 16 39 H 0.06 1.46 4.92 -2.39 -0.01 1.44 16 40 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 41 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.06 1.46 4.92 -2.38 -0.01 1.45 16 45 H 0.14 6.77 5.61 -2.91 -0.02 6.75 16 Total: -1.00 -61.23 363.76 6.65 -54.58 By element: Atomic # 1 Polarization: 27.37 SS G_CDS: 0.99 Total: 28.36 kcal Atomic # 6 Polarization: -21.33 SS G_CDS: 5.08 Total: -16.25 kcal Atomic # 7 Polarization: -69.05 SS G_CDS: -1.33 Total: -70.38 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -0.07 Total: -35.55 kcal Atomic # 14 Polarization: 39.03 SS G_CDS: 2.03 Total: 41.06 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.06 Total: -1.83 kcal Total: -61.23 6.65 -54.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000570868315.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.503 kcal (2) G-P(sol) polarization free energy of solvation -61.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds